Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47103 * 300.00720 * 3 2 1 6 6 H 1.48500 * 109.46859 * 60.00269 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99594 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47345 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.36007 * 55.72286 * 10 9 7 12 12 C 1.54459 * 110.32055 * 177.88968 * 10 9 7 13 13 O 1.44837 * 102.89690 * 140.70014 * 12 10 9 14 14 C 1.44392 * 103.22987 * 323.38620 * 13 12 10 15 15 H 1.08996 * 110.16974 * 280.01853 * 14 13 12 16 16 C 1.53006 * 110.11069 * 158.39803 * 14 13 12 17 17 C 1.53116 * 109.52051 * 182.94015 * 16 14 13 18 18 C 1.53038 * 109.27341 * 182.44329 * 17 16 14 19 19 N 1.46846 * 109.52736 * 59.18067 * 18 17 16 20 20 C 1.46845 * 111.19622 * 298.25754 * 19 18 17 21 21 C 1.53033 * 109.52418 * 61.73803 * 20 19 18 22 22 O 1.43785 * 106.17177 * 39.22907 * 14 13 12 23 23 H 0.97006 * 120.00391 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46802 * 60.00269 * 9 7 2 25 25 H 1.09003 * 109.47326 * 300.01401 * 9 7 2 26 26 H 1.08996 * 110.72623 * 259.05660 * 12 10 9 27 27 H 1.09000 * 110.72762 * 22.16985 * 12 10 9 28 28 H 1.08997 * 109.52083 * 303.13126 * 16 14 13 29 29 H 1.08998 * 109.50614 * 302.38238 * 17 16 14 30 30 H 1.08995 * 109.50666 * 62.50605 * 17 16 14 31 31 H 1.08998 * 109.46716 * 299.16000 * 18 17 16 32 32 H 1.09005 * 109.46140 * 179.19682 * 18 17 16 33 33 H 1.00899 * 110.99821 * 62.34885 * 19 18 17 34 34 H 1.09002 * 109.46378 * 301.72104 * 20 19 18 35 35 H 1.09001 * 109.45167 * 181.74823 * 20 19 18 36 36 H 1.08997 * 109.50447 * 180.87690 * 21 20 19 37 37 H 1.09006 * 109.50292 * 60.76232 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9291 -3.5764 0.8438 12 6 1.4936 -5.0104 0.0528 13 8 2.2652 -5.8464 -0.8436 14 6 2.6603 -4.9326 -1.8895 15 1 1.8392 -4.7869 -2.5913 16 6 3.8894 -5.4729 -2.6234 17 6 4.3406 -4.4604 -3.6797 18 6 5.5321 -5.0324 -4.4512 19 7 5.1416 -6.2945 -5.0923 20 6 4.7494 -7.2978 -4.0944 21 6 3.5346 -6.7935 -3.3122 22 8 2.9798 -3.6916 -1.2375 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8896 26 1 1.5028 -5.4175 1.0638 27 1 0.4707 -4.8963 -0.3062 28 1 4.6959 -5.6396 -1.9094 29 1 3.5201 -4.2647 -4.3701 30 1 4.6353 -3.5317 -3.1912 31 1 6.3570 -5.2149 -3.7625 32 1 5.8468 -4.3199 -5.2138 33 1 4.4039 -6.1455 -5.7645 34 1 5.5779 -7.4698 -3.4073 35 1 4.4955 -8.2306 -4.5979 36 1 3.2533 -7.5317 -2.5612 37 1 2.7014 -6.6345 -3.9968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = -110.785518 kcal Electronic energy + Delta-G solvation = -18018.861331 eV Core-core repulsion = 15181.117391 eV Total energy + Delta-G solvation = -2837.743941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07548 -38.40783 -34.57169 -33.38090 -32.45566 -30.83460 -30.28772 -26.84930 -25.09224 -23.30608 -22.73026 -21.89772 -20.57012 -20.14112 -16.85559 -16.45151 -16.10068 -15.78596 -15.13474 -14.70718 -14.63169 -14.19709 -13.89410 -13.38061 -13.18487 -12.85506 -12.28306 -12.19646 -12.05830 -11.86305 -11.55158 -11.40230 -11.24675 -11.12198 -10.61063 -10.56634 -10.45854 -10.34471 -9.87176 -9.70390 -9.13857 -8.82789 -8.41866 -8.40155 -6.03809 -4.04596 3.30384 3.37844 3.43486 3.98584 4.15931 4.36608 4.44774 4.80005 4.96630 5.05229 5.14152 5.26807 5.31798 5.34111 5.37238 5.43749 5.54738 5.65379 5.74374 5.82065 5.88330 5.89004 5.96541 6.08940 6.16627 6.28157 6.40201 6.43309 6.77989 6.93909 7.27556 7.31939 7.55683 7.76818 7.94083 8.35263 9.00222 9.58835 11.07957 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.005930 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.318725 B = 4721.012857 C = 5433.681510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.060 3.940 11 H 0.079 0.921 12 C 0.016 3.984 13 O -0.388 6.388 14 C 0.232 3.768 15 H 0.063 0.937 16 C -0.081 4.081 17 C -0.148 4.148 18 C 0.058 3.942 19 N -0.689 5.689 20 C 0.059 3.941 21 C -0.149 4.149 22 O -0.364 6.364 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.031 0.969 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.339 0.661 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -12.570 -6.403 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.003 3.997 11 H 0.097 0.903 12 C -0.061 4.061 13 O -0.308 6.308 14 C 0.137 3.863 15 H 0.080 0.920 16 C -0.100 4.100 17 C -0.188 4.188 18 C -0.072 4.072 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.188 4.188 22 O -0.285 6.285 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.139 -12.762 -6.523 16.012 hybrid contribution -0.887 1.426 0.458 1.741 sum 6.253 -11.335 -6.065 14.296 Atomic orbital electron populations 1.69962 1.06065 1.26589 1.51247 1.25008 0.94854 0.99339 0.95363 0.86495 0.80198 0.83577 0.77524 1.19663 1.21022 1.21044 1.21131 0.93224 0.90344 1.49904 0.92267 1.19459 0.93315 0.91589 0.97954 1.23836 0.94270 0.95307 0.86265 0.90264 1.24435 0.96072 0.90613 0.94960 1.89307 1.71094 1.33530 1.36915 1.24223 0.94746 0.78268 0.89100 0.92007 1.21262 0.96949 0.94920 0.96876 1.22179 0.99076 0.99596 0.97921 1.22027 0.96903 0.90518 0.97716 1.60702 1.44406 1.09902 1.16714 1.22006 0.96215 0.94981 0.93917 1.22213 0.99043 0.97267 1.00262 1.88970 1.68612 1.36295 1.34634 0.93034 0.95917 0.95128 0.88428 0.90996 0.90078 0.91891 0.89847 0.90914 0.90579 0.84359 0.90936 0.90778 0.90685 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.43 8.94 -34.44 -0.31 -14.74 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.01 0.35 4.60 -27.89 -0.13 0.22 16 10 C 0.06 1.28 3.68 -25.97 -0.10 1.18 16 11 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 12 C 0.02 0.28 7.36 37.92 0.28 0.55 16 13 O -0.39 -6.86 11.08 -59.28 -0.66 -7.52 16 14 C 0.23 4.09 3.35 37.16 0.12 4.22 16 15 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.08 -1.17 2.29 -90.50 -0.21 -1.37 16 17 C -0.15 -2.00 5.19 -26.65 -0.14 -2.13 16 18 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 19 N -0.69 -7.28 6.87 -113.82 -0.78 -8.06 16 20 C 0.06 0.60 6.55 -3.84 -0.03 0.57 16 21 C -0.15 -1.76 5.22 -26.65 -0.14 -1.89 16 22 O -0.36 -7.81 10.20 -59.28 -0.60 -8.41 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.28 7.80 -51.93 -0.41 0.88 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.34 3.24 8.86 -39.29 -0.35 2.89 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -30.58 297.65 -8.79 -39.37 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.18 Total: 0.68 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.76 Total: -11.28 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.05 Total: -34.16 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.26 Total: -15.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.58 -8.79 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.418 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds