Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47103 * 300.00720 * 3 2 1 6 6 H 1.48500 * 109.46859 * 60.00269 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99594 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47345 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.36007 * 55.72286 * 10 9 7 12 12 C 1.54459 * 110.32055 * 177.88968 * 10 9 7 13 13 O 1.44837 * 102.89690 * 140.70014 * 12 10 9 14 14 C 1.44392 * 103.22987 * 323.38620 * 13 12 10 15 15 H 1.08996 * 110.16974 * 280.01853 * 14 13 12 16 16 C 1.53006 * 110.11069 * 158.39803 * 14 13 12 17 17 C 1.53116 * 109.52051 * 182.94015 * 16 14 13 18 18 C 1.53038 * 109.27341 * 182.44329 * 17 16 14 19 19 N 1.46846 * 109.52736 * 59.18067 * 18 17 16 20 20 C 1.46845 * 111.19622 * 298.25754 * 19 18 17 21 21 C 1.53033 * 109.52418 * 61.73803 * 20 19 18 22 22 O 1.43785 * 106.17177 * 39.22907 * 14 13 12 23 23 H 0.97006 * 120.00391 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46802 * 60.00269 * 9 7 2 25 25 H 1.09003 * 109.47326 * 300.01401 * 9 7 2 26 26 H 1.08996 * 110.72623 * 259.05660 * 12 10 9 27 27 H 1.09000 * 110.72762 * 22.16985 * 12 10 9 28 28 H 1.08997 * 109.52083 * 303.13126 * 16 14 13 29 29 H 1.08998 * 109.50614 * 302.38238 * 17 16 14 30 30 H 1.08995 * 109.50666 * 62.50605 * 17 16 14 31 31 H 1.08998 * 109.46716 * 299.16000 * 18 17 16 32 32 H 1.09005 * 109.46140 * 179.19682 * 18 17 16 33 33 H 1.00899 * 110.99821 * 62.34885 * 19 18 17 34 34 H 1.09002 * 109.46378 * 301.72104 * 20 19 18 35 35 H 1.09001 * 109.45167 * 181.74823 * 20 19 18 36 36 H 1.08997 * 109.50447 * 180.87690 * 21 20 19 37 37 H 1.09006 * 109.50292 * 60.76232 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9291 -3.5764 0.8438 12 6 1.4936 -5.0104 0.0528 13 8 2.2652 -5.8464 -0.8436 14 6 2.6603 -4.9326 -1.8895 15 1 1.8392 -4.7869 -2.5913 16 6 3.8894 -5.4729 -2.6234 17 6 4.3406 -4.4604 -3.6797 18 6 5.5321 -5.0324 -4.4512 19 7 5.1416 -6.2945 -5.0923 20 6 4.7494 -7.2978 -4.0944 21 6 3.5346 -6.7935 -3.3122 22 8 2.9798 -3.6916 -1.2375 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8896 26 1 1.5028 -5.4175 1.0638 27 1 0.4707 -4.8963 -0.3062 28 1 4.6959 -5.6396 -1.9094 29 1 3.5201 -4.2647 -4.3701 30 1 4.6353 -3.5317 -3.1912 31 1 6.3570 -5.2149 -3.7625 32 1 5.8468 -4.3199 -5.2138 33 1 4.4039 -6.1455 -5.7645 34 1 5.5779 -7.4698 -3.4073 35 1 4.4955 -8.2306 -4.5979 36 1 3.2533 -7.5317 -2.5612 37 1 2.7014 -6.6345 -3.9968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = -132.031450 kcal Electronic energy + Delta-G solvation = -18019.782624 eV Core-core repulsion = 15181.117391 eV Total energy + Delta-G solvation = -2838.665233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.51967 -39.47434 -36.20944 -35.23935 -33.87500 -32.02720 -31.75939 -28.64796 -26.38448 -25.09307 -23.82479 -23.05697 -22.22481 -21.29110 -18.55945 -18.23217 -17.62034 -17.06289 -16.63687 -16.36437 -15.60736 -15.40816 -15.21224 -15.02516 -14.46486 -14.17055 -13.91840 -13.68661 -13.42043 -13.25511 -13.12313 -12.96561 -12.67372 -12.44899 -12.34549 -12.19211 -11.86137 -11.58359 -11.34801 -11.19898 -11.18186 -10.62839 -10.49771 -9.33422 -8.24215 -6.33013 1.37152 1.38010 1.51532 2.38446 2.57314 2.86858 3.11060 3.43171 3.67319 3.71877 3.86260 3.92308 3.96747 4.11696 4.18095 4.28020 4.41078 4.49138 4.53952 4.61435 4.70432 4.74742 4.87105 4.95230 5.03968 5.06711 5.12704 5.20530 5.28557 5.36464 5.50027 5.71700 6.05928 6.08308 6.22448 6.49019 6.79021 7.34867 8.87884 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.005930 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.318725 B = 4721.012857 C = 5433.681510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.020 3.980 10 C 0.061 3.939 11 H 0.082 0.918 12 C 0.024 3.976 13 O -0.384 6.384 14 C 0.226 3.774 15 H 0.058 0.942 16 C -0.077 4.077 17 C -0.144 4.144 18 C 0.066 3.934 19 N -0.688 5.688 20 C 0.063 3.937 21 C -0.140 4.140 22 O -0.389 6.389 23 H 0.264 0.736 24 H -0.005 1.005 25 H 0.019 0.981 26 H 0.129 0.871 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.347 0.653 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -13.327 -6.973 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.071 0.929 9 C -0.017 4.017 10 C 0.004 3.996 11 H 0.100 0.900 12 C -0.053 4.053 13 O -0.305 6.305 14 C 0.131 3.869 15 H 0.075 0.925 16 C -0.096 4.096 17 C -0.184 4.184 18 C -0.064 4.064 19 N -0.316 5.316 20 C -0.067 4.067 21 C -0.179 4.179 22 O -0.310 6.310 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.038 0.962 26 H 0.147 0.853 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.149 -13.537 -7.100 17.322 hybrid contribution -1.240 1.649 0.624 2.155 sum 6.909 -11.888 -6.476 15.199 Atomic orbital electron populations 1.70068 1.07550 1.27771 1.51866 1.25885 0.95766 1.03089 0.94784 0.85428 0.78915 0.78967 0.77934 1.19143 1.20402 1.19931 1.21457 0.93155 0.91967 1.50100 0.92944 1.19303 0.93651 0.92763 0.95975 1.23643 0.93732 0.95659 0.86562 0.90035 1.24414 0.95448 0.88694 0.96695 1.89308 1.71080 1.33240 1.36824 1.24489 0.96234 0.77307 0.88856 0.92502 1.21278 0.95080 0.96412 0.96791 1.22154 1.00110 0.98430 0.97679 1.21967 0.95637 0.91064 0.97723 1.60716 1.44795 1.09388 1.16712 1.22029 0.95284 0.95550 0.93787 1.22176 1.00045 0.95497 1.00206 1.88942 1.68612 1.38540 1.34907 0.92673 0.98650 0.96235 0.85262 0.90867 0.90837 0.91985 0.92387 0.90974 0.89417 0.83500 0.90990 0.88698 0.90856 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -30.63 8.94 25.60 0.23 -30.40 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.02 1.06 4.60 29.85 0.14 1.20 16 10 C 0.06 2.62 3.68 31.09 0.11 2.74 16 11 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 12 C 0.02 0.81 7.36 72.48 0.53 1.35 16 13 O -0.38 -13.16 11.08 -125.98 -1.40 -14.55 16 14 C 0.23 7.95 3.35 71.98 0.24 8.19 16 15 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.08 -2.15 2.29 -10.71 -0.02 -2.17 16 17 C -0.14 -3.82 5.19 30.65 0.16 -3.66 16 18 C 0.07 1.37 6.55 86.33 0.57 1.94 16 19 N -0.69 -12.86 6.87 -514.01 -3.53 -16.39 16 20 C 0.06 1.13 6.55 86.32 0.57 1.70 16 21 C -0.14 -3.05 5.22 30.64 0.16 -2.89 16 22 O -0.39 -16.94 10.20 -125.98 -1.29 -18.22 16 23 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 24 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.13 3.60 8.14 -2.39 -0.02 3.59 16 27 H 0.07 2.49 7.86 -2.39 -0.02 2.47 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.82 7.80 -2.39 -0.02 1.80 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.35 5.74 8.86 -89.69 -0.79 4.95 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.65 7.88 -2.39 -0.02 1.63 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -65.40 297.65 -0.51 -65.91 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.24 Total: 13.72 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.14 Total: -21.41 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -3.24 Total: -72.47 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -2.68 Total: -32.77 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.40 -0.51 -65.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.118 kcal (2) G-P(sol) polarization free energy of solvation -65.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds