Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.31180 * 54.30294 * 10 9 7 12 12 C 1.54175 * 110.34214 * 176.48371 * 10 9 7 13 13 O 1.44294 * 104.94187 * 118.87040 * 12 10 9 14 14 C 1.44409 * 104.60936 * 23.63604 * 13 12 10 15 15 H 1.09000 * 110.39888 * 79.57181 * 14 13 12 16 16 C 1.53000 * 110.40034 * 201.87511 * 14 13 12 17 17 C 1.53113 * 109.52478 * 58.23266 * 16 14 13 18 18 C 1.53034 * 109.28123 * 182.43601 * 17 16 14 19 19 N 1.46854 * 109.51829 * 59.17845 * 18 17 16 20 20 C 1.46840 * 111.19931 * 298.25647 * 19 18 17 21 21 C 1.53041 * 109.52220 * 61.74315 * 20 19 18 22 22 O 1.44293 * 110.35077 * 292.11387 * 10 9 7 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.09004 * 110.34694 * 237.72945 * 12 10 9 27 27 H 1.08996 * 110.35003 * 359.89322 * 12 10 9 28 28 H 1.09007 * 109.51405 * 178.42278 * 16 14 13 29 29 H 1.09002 * 109.50453 * 302.37960 * 17 16 14 30 30 H 1.09009 * 109.50539 * 62.49393 * 17 16 14 31 31 H 1.08997 * 109.46419 * 299.16778 * 18 17 16 32 32 H 1.08994 * 109.45777 * 179.18885 * 18 17 16 33 33 H 1.00894 * 111.00122 * 62.36124 * 19 18 17 34 34 H 1.08998 * 109.46740 * 301.73111 * 20 19 18 35 35 H 1.09001 * 109.45645 * 181.75131 * 20 19 18 36 36 H 1.09002 * 109.50542 * 180.87536 * 21 20 19 37 37 H 1.09000 * 109.53420 * 60.78122 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 1 2.9445 -3.5627 0.8275 12 6 1.4969 -5.0071 0.0847 13 8 1.8471 -5.7072 -1.1274 14 6 3.1025 -5.1222 -1.5363 15 1 3.9243 -5.5429 -0.9569 16 6 3.3346 -5.3486 -3.0315 17 6 2.1773 -4.7386 -3.8271 18 6 2.3841 -5.0210 -5.3169 19 7 2.4427 -6.4716 -5.5378 20 6 3.5749 -7.0725 -4.8214 21 6 3.4037 -6.8513 -3.3168 22 8 2.9585 -3.7113 -1.2561 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6247 -2.5562 -0.8920 26 1 1.8297 -5.5699 0.9569 27 1 0.4209 -4.8399 0.1304 28 1 4.2713 -4.8776 -3.3300 29 1 1.2370 -5.1821 -3.4997 30 1 2.1495 -3.6615 -3.6613 31 1 3.3178 -4.5655 -5.6467 32 1 1.5543 -4.6004 -5.8847 33 1 1.5738 -6.9127 -5.2758 34 1 4.5030 -6.6074 -5.1535 35 1 3.6099 -8.1419 -5.0295 36 1 4.2521 -7.2838 -2.7865 37 1 2.4830 -7.3282 -2.9808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = -109.585264 kcal Electronic energy + Delta-G solvation = -18176.216227 eV Core-core repulsion = 15338.524333 eV Total energy + Delta-G solvation = -2837.691894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09049 -38.26595 -34.51285 -33.36867 -32.40656 -30.77405 -30.27022 -26.79349 -25.19965 -23.17972 -22.82230 -21.87631 -20.66965 -19.75806 -16.92906 -16.18968 -15.89873 -15.76416 -15.29106 -14.64664 -14.59395 -14.37986 -14.04463 -13.54675 -12.96137 -12.63136 -12.29320 -12.17293 -12.05982 -11.70228 -11.42024 -11.28831 -11.15125 -11.07310 -10.63628 -10.55607 -10.45467 -10.27571 -9.94176 -9.49385 -9.10556 -8.99283 -8.39534 -8.35328 -6.02201 -4.03496 3.33782 3.37719 3.41164 4.07649 4.20852 4.39840 4.45427 4.80088 4.94155 5.08705 5.20453 5.28251 5.33016 5.37740 5.46490 5.51100 5.51561 5.60155 5.78256 5.86199 5.88275 6.00952 6.05589 6.13183 6.20214 6.40949 6.51023 6.58427 6.73753 7.03100 7.29634 7.36082 7.54703 7.77441 7.94439 8.35526 9.00221 9.59652 11.09331 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.006016 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.809664 B = 4652.858470 C = 5082.815323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.056 3.944 11 H 0.068 0.932 12 C 0.018 3.982 13 O -0.383 6.383 14 C 0.224 3.776 15 H 0.060 0.940 16 C -0.077 4.077 17 C -0.146 4.146 18 C 0.056 3.944 19 N -0.689 5.689 20 C 0.059 3.941 21 C -0.149 4.149 22 O -0.355 6.355 23 H 0.261 0.739 24 H 0.031 0.969 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.340 0.660 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -13.182 -5.695 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.001 4.001 11 H 0.086 0.914 12 C -0.058 4.058 13 O -0.304 6.304 14 C 0.129 3.871 15 H 0.077 0.923 16 C -0.095 4.095 17 C -0.185 4.185 18 C -0.074 4.074 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.188 4.188 22 O -0.276 6.276 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.517 -12.991 -6.550 15.560 hybrid contribution 0.215 1.000 1.411 1.742 sum 5.732 -11.991 -5.140 14.250 Atomic orbital electron populations 1.69941 1.06035 1.26818 1.50905 1.24990 0.94850 0.99265 0.95307 0.86615 0.79543 0.82953 0.78652 1.20193 1.21293 1.20280 1.21068 0.93077 0.90497 1.50417 0.92501 1.19296 0.92987 0.90737 0.98163 1.23861 0.94479 0.96107 0.85686 0.91373 1.24192 1.02201 0.92527 0.86921 1.89132 1.39562 1.60072 1.41632 1.24399 0.86965 0.80665 0.95114 0.92292 1.21204 1.00124 0.96034 0.92165 1.22142 0.98136 1.03007 0.95185 1.22058 1.02339 0.88174 0.94807 1.60714 1.06975 1.04363 1.59637 1.21988 0.94935 0.99524 0.90629 1.22227 1.02787 0.95563 0.98266 1.89417 1.76361 1.21507 1.40281 0.92895 0.95044 0.95368 0.92138 0.88651 0.89819 0.91273 0.89940 0.91121 0.90676 0.84282 0.91082 0.90880 0.91697 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.59 8.97 -34.44 -0.31 -14.90 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.64 4.51 -27.88 -0.13 0.52 16 10 C 0.06 1.18 3.48 -26.12 -0.09 1.09 16 11 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 12 C 0.02 0.32 7.55 37.77 0.29 0.61 16 13 O -0.38 -6.77 10.16 -59.40 -0.60 -7.38 16 14 C 0.22 3.81 3.48 37.16 0.13 3.94 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.08 -1.11 2.43 -90.50 -0.22 -1.32 16 17 C -0.15 -2.21 5.04 -26.66 -0.13 -2.34 16 18 C 0.06 0.70 6.55 -3.83 -0.03 0.67 16 19 N -0.69 -7.91 6.87 -113.82 -0.78 -8.70 16 20 C 0.06 0.62 6.55 -3.84 -0.03 0.59 16 21 C -0.15 -1.74 5.27 -26.65 -0.14 -1.89 16 22 O -0.36 -7.58 10.35 -59.40 -0.61 -8.20 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.67 7.71 -51.93 -0.40 1.27 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.13 7.61 -51.93 -0.40 0.73 16 30 H 0.08 1.48 7.74 -51.92 -0.40 1.08 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.34 3.69 8.86 -39.29 -0.35 3.34 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -30.50 296.06 -8.71 -39.21 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.14 Total: 1.34 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.75 Total: -11.49 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.05 Total: -34.83 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.22 Total: -15.57 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.50 -8.71 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.373 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds