Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.31180 * 54.30294 * 10 9 7 12 12 C 1.54175 * 110.34214 * 176.48371 * 10 9 7 13 13 O 1.44294 * 104.94187 * 118.87040 * 12 10 9 14 14 C 1.44409 * 104.60936 * 23.63604 * 13 12 10 15 15 H 1.09000 * 110.39888 * 79.57181 * 14 13 12 16 16 C 1.53000 * 110.40034 * 201.87511 * 14 13 12 17 17 C 1.53113 * 109.52478 * 58.23266 * 16 14 13 18 18 C 1.53034 * 109.28123 * 182.43601 * 17 16 14 19 19 N 1.46854 * 109.51829 * 59.17845 * 18 17 16 20 20 C 1.46840 * 111.19931 * 298.25647 * 19 18 17 21 21 C 1.53041 * 109.52220 * 61.74315 * 20 19 18 22 22 O 1.44293 * 110.35077 * 292.11387 * 10 9 7 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.09004 * 110.34694 * 237.72945 * 12 10 9 27 27 H 1.08996 * 110.35003 * 359.89322 * 12 10 9 28 28 H 1.09007 * 109.51405 * 178.42278 * 16 14 13 29 29 H 1.09002 * 109.50453 * 302.37960 * 17 16 14 30 30 H 1.09009 * 109.50539 * 62.49393 * 17 16 14 31 31 H 1.08997 * 109.46419 * 299.16778 * 18 17 16 32 32 H 1.08994 * 109.45777 * 179.18885 * 18 17 16 33 33 H 1.00894 * 111.00122 * 62.36124 * 19 18 17 34 34 H 1.08998 * 109.46740 * 301.73111 * 20 19 18 35 35 H 1.09001 * 109.45645 * 181.75131 * 20 19 18 36 36 H 1.09002 * 109.50542 * 180.87536 * 21 20 19 37 37 H 1.09000 * 109.53420 * 60.78122 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 1 2.9445 -3.5627 0.8275 12 6 1.4969 -5.0071 0.0847 13 8 1.8471 -5.7072 -1.1274 14 6 3.1025 -5.1222 -1.5363 15 1 3.9243 -5.5429 -0.9569 16 6 3.3346 -5.3486 -3.0315 17 6 2.1773 -4.7386 -3.8271 18 6 2.3841 -5.0210 -5.3169 19 7 2.4427 -6.4716 -5.5378 20 6 3.5749 -7.0725 -4.8214 21 6 3.4037 -6.8513 -3.3168 22 8 2.9585 -3.7113 -1.2561 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6247 -2.5562 -0.8920 26 1 1.8297 -5.5699 0.9569 27 1 0.4209 -4.8399 0.1304 28 1 4.2713 -4.8776 -3.3300 29 1 1.2370 -5.1821 -3.4997 30 1 2.1495 -3.6615 -3.6613 31 1 3.3178 -4.5655 -5.6467 32 1 1.5543 -4.6004 -5.8847 33 1 1.5738 -6.9127 -5.2758 34 1 4.5030 -6.6074 -5.1535 35 1 3.6099 -8.1419 -5.0295 36 1 4.2521 -7.2838 -2.7865 37 1 2.4830 -7.3282 -2.9808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = -130.959474 kcal Electronic energy + Delta-G solvation = -18177.143082 eV Core-core repulsion = 15338.524333 eV Total energy + Delta-G solvation = -2838.618749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50125 -39.37909 -36.12624 -35.24143 -33.83365 -32.03953 -31.73647 -28.60219 -26.46135 -25.08912 -23.87523 -22.97784 -22.34695 -20.95235 -18.78313 -17.70602 -17.46342 -17.08052 -16.77994 -16.50346 -15.75158 -15.57082 -15.16274 -14.86975 -14.34614 -14.18093 -14.06724 -13.62047 -13.30686 -13.13021 -13.09249 -12.86920 -12.59383 -12.51317 -12.37418 -12.13991 -11.84859 -11.57784 -11.38245 -11.24756 -10.88480 -10.62788 -10.59882 -9.32740 -8.23185 -6.32789 1.37555 1.40802 1.48748 2.38746 2.66084 2.91847 3.11967 3.42221 3.65855 3.74156 3.83851 3.90822 3.97636 4.15258 4.21907 4.39989 4.46656 4.48359 4.52476 4.60736 4.79433 4.84695 4.88295 4.95006 5.02930 5.09456 5.18402 5.26774 5.31237 5.40993 5.46749 5.72657 6.05222 6.07869 6.21733 6.46754 6.78854 7.34976 8.88528 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.006016 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.809664 B = 4652.858470 C = 5082.815323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.031 3.969 10 C 0.058 3.942 11 H 0.078 0.922 12 C 0.026 3.974 13 O -0.387 6.387 14 C 0.218 3.782 15 H 0.083 0.917 16 C -0.077 4.077 17 C -0.140 4.140 18 C 0.064 3.936 19 N -0.688 5.688 20 C 0.061 3.939 21 C -0.138 4.138 22 O -0.386 6.386 23 H 0.265 0.735 24 H 0.019 0.981 25 H -0.008 1.008 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.344 0.656 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -14.275 -5.946 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.072 0.928 9 C -0.006 4.006 10 C 0.001 3.999 11 H 0.096 0.904 12 C -0.051 4.051 13 O -0.308 6.308 14 C 0.123 3.877 15 H 0.100 0.900 16 C -0.096 4.096 17 C -0.179 4.179 18 C -0.065 4.065 19 N -0.316 5.316 20 C -0.069 4.069 21 C -0.177 4.177 22 O -0.307 6.307 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.011 0.989 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.144 -14.108 -6.801 17.214 hybrid contribution -0.309 1.310 1.473 1.996 sum 6.836 -12.798 -5.327 15.456 Atomic orbital electron populations 1.70064 1.07628 1.27906 1.51630 1.25904 0.95765 1.03158 0.94720 0.85525 0.78334 0.78272 0.79074 1.19820 1.20540 1.18885 1.21434 0.93193 0.92002 1.50461 0.92760 1.19120 0.93432 0.92323 0.95770 1.23650 0.93984 0.96062 0.86199 0.90403 1.24149 1.01599 0.91092 0.88266 1.89122 1.40153 1.59756 1.41803 1.24809 0.87162 0.78602 0.97120 0.89977 1.21301 0.99683 0.98274 0.90344 1.22049 0.97956 1.00368 0.97529 1.21957 1.02640 0.89289 0.92657 1.60736 1.07713 1.03432 1.59727 1.22077 0.94574 1.00822 0.89399 1.22169 1.03145 0.92944 0.99488 1.89378 1.76412 1.24614 1.40261 0.92672 0.96251 0.98928 0.88414 0.89248 0.89311 0.92948 0.93761 0.90710 0.90461 0.83822 0.90543 0.88657 0.89805 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.53 -31.02 8.97 25.60 0.23 -30.79 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.03 1.63 4.51 29.85 0.13 1.77 16 10 C 0.06 2.48 3.48 30.99 0.11 2.58 16 11 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 12 C 0.03 0.88 7.55 72.38 0.55 1.42 16 13 O -0.39 -13.32 10.16 -125.87 -1.28 -14.60 16 14 C 0.22 7.17 3.48 71.98 0.25 7.42 16 15 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.08 -2.15 2.43 -10.72 -0.03 -2.17 16 17 C -0.14 -4.30 5.04 30.64 0.15 -4.15 16 18 C 0.06 1.57 6.55 86.32 0.57 2.14 16 19 N -0.69 -14.46 6.87 -514.02 -3.53 -17.99 16 20 C 0.06 1.09 6.55 86.33 0.57 1.66 16 21 C -0.14 -2.88 5.27 30.65 0.16 -2.72 16 22 O -0.39 -16.62 10.35 -125.87 -1.30 -17.92 16 23 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.09 3.15 7.71 -2.39 -0.02 3.14 16 28 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.05 1.75 7.61 -2.39 -0.02 1.73 16 30 H 0.04 1.67 7.74 -2.38 -0.02 1.66 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.34 6.87 8.86 -89.70 -0.79 6.07 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.45 7.70 -2.39 -0.02 1.43 16 Total: -1.00 -66.60 296.06 -0.40 -67.00 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.25 Total: 15.33 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.15 Total: -22.24 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -3.24 Total: -74.75 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -2.58 Total: -32.52 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.60 -0.40 -67.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.959 kcal (2) G-P(sol) polarization free energy of solvation -66.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds