Wall clock time and date at job start Mon Mar 30 2020 04:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34629 * 116.99663 * 2 1 4 4 O 1.21514 * 120.00506 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99848 * 180.02562 * 3 2 1 6 6 C 1.47070 * 136.05457 * 359.62914 * 5 3 2 7 7 C 1.53232 * 88.07961 * 207.20410 * 6 5 3 8 8 C 1.53002 * 114.32404 * 220.46895 * 7 6 5 9 9 H 1.08996 * 109.47366 * 33.75900 * 8 7 6 10 10 C 1.50708 * 109.47136 * 153.76113 * 8 7 6 11 11 H 1.07994 * 120.00099 * 5.62368 * 10 8 7 12 12 C 1.37879 * 119.99727 * 185.62616 * 10 8 7 13 13 N 1.31512 * 120.00102 * 355.18723 * 12 10 8 14 14 Si 1.86796 * 119.99368 * 175.18906 * 12 10 8 15 15 H 1.48499 * 109.47509 * 60.00471 * 14 12 10 16 16 H 1.48504 * 109.46691 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47561 * 299.99678 * 14 12 10 18 18 C 1.52995 * 109.47378 * 273.75905 * 8 7 6 19 19 C 1.53005 * 109.47236 * 300.35833 * 18 8 7 20 20 C 1.53000 * 109.47261 * 60.35412 * 18 8 7 21 21 C 1.47064 * 136.05883 * 179.97438 * 5 3 2 22 22 H 1.08998 * 109.47273 * 300.00353 * 1 2 3 23 23 H 1.09003 * 109.46813 * 60.00267 * 1 2 3 24 24 H 1.09005 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.09001 * 113.46486 * 321.93482 * 6 5 3 26 26 H 1.08998 * 113.46737 * 92.37464 * 6 5 3 27 27 H 1.09002 * 114.20325 * 87.72808 * 7 6 5 28 28 H 0.97001 * 119.99939 * 179.97438 * 13 12 10 29 29 H 1.08996 * 109.47558 * 180.35764 * 18 8 7 30 30 H 1.08996 * 109.46903 * 59.99530 * 19 18 8 31 31 H 1.09000 * 109.47419 * 179.97438 * 19 18 8 32 32 H 1.09003 * 109.46538 * 299.99455 * 19 18 8 33 33 H 1.09011 * 109.47092 * 64.49751 * 20 18 8 34 34 H 1.08992 * 109.47588 * 184.49929 * 20 18 8 35 35 H 1.09003 * 109.47362 * 304.50010 * 20 18 8 36 36 H 1.08996 * 113.46973 * 267.62131 * 21 5 3 37 37 H 1.09004 * 113.46707 * 38.00866 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.5201 0.3064 0.0054 7 6 5.3739 1.3733 0.6989 8 6 6.8175 1.4488 0.1977 9 1 6.8454 1.2150 -0.8665 10 6 7.3547 2.8391 0.4208 11 1 6.7631 3.5672 0.9558 12 6 8.6015 3.1815 -0.0581 13 7 9.3609 2.2702 -0.6258 14 14 9.2118 4.9399 0.0996 15 1 9.2619 5.3198 1.5343 16 1 10.5716 5.0463 -0.4878 17 1 8.2877 5.8513 -0.6218 18 6 7.6768 0.4411 0.9638 19 6 7.6306 0.7639 2.4587 20 6 7.1369 -0.9713 0.7303 21 6 4.4132 2.3447 -0.0012 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.3321 -0.5687 0.6274 26 1 4.8750 0.0470 -0.9919 27 1 5.2948 1.3718 1.7860 28 1 10.2379 2.5112 -0.9630 29 1 8.7065 0.4994 0.6113 30 1 6.6009 0.7057 2.8113 31 1 8.2424 0.0457 3.0047 32 1 8.0154 1.7701 2.6251 33 1 7.2436 -1.2315 -0.3229 34 1 7.6986 -1.6802 1.3384 35 1 6.0837 -1.0083 1.0087 36 1 4.7395 2.6333 -1.0003 37 1 4.1342 3.1999 0.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:03 Heat of formation + Delta-G solvation = -52.512125 kcal Electronic energy + Delta-G solvation = -18096.326206 eV Core-core repulsion = 15261.109189 eV Total energy + Delta-G solvation = -2835.217017 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36756 -38.89167 -36.03871 -35.26124 -32.08676 -30.05544 -27.73118 -26.86093 -25.93164 -25.21749 -23.31653 -21.31106 -19.62231 -18.32939 -17.46836 -16.72107 -16.42988 -16.05884 -14.86393 -14.66704 -14.07663 -13.90531 -13.32171 -13.11182 -12.66166 -12.60167 -12.16749 -11.91854 -11.80888 -11.58552 -11.22638 -10.92541 -10.86735 -10.67441 -10.62645 -10.34500 -10.26217 -10.10450 -9.65426 -9.50153 -9.05968 -8.70682 -8.37148 -8.34219 -6.03434 -4.07899 2.31959 3.11627 3.30837 3.36184 3.39405 4.19896 4.40800 5.11072 5.16831 5.22841 5.28602 5.44034 5.56959 5.74196 5.78917 5.88737 6.10818 6.17198 6.17436 6.24760 6.29762 6.50087 6.54552 6.59040 6.72368 6.82098 6.94682 6.98715 7.42194 7.49433 7.71061 7.85489 8.05789 8.08338 8.37682 8.54154 8.94256 9.56337 11.02818 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.006577 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.669938 B = 4256.382713 C = 4913.389301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.373 6.373 3 C 0.669 3.331 4 O -0.585 6.585 5 N -0.636 5.636 6 C 0.104 3.896 7 C -0.104 4.104 8 C 0.069 3.931 9 H 0.034 0.966 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C -0.090 4.090 19 C -0.129 4.129 20 C -0.151 4.151 21 C 0.141 3.859 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.261 0.739 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 -6.091 1.662 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.287 6.287 3 C 0.425 3.575 4 O -0.475 6.475 5 N -0.377 5.377 6 C -0.018 4.018 7 C -0.123 4.123 8 C 0.050 3.950 9 H 0.053 0.947 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.714 3.286 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.109 4.109 19 C -0.186 4.186 20 C -0.208 4.208 21 C 0.021 3.979 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.125 -5.844 1.565 10.949 hybrid contribution 0.164 0.951 -0.011 0.965 sum -8.962 -4.893 1.555 10.328 Atomic orbital electron populations 1.23109 0.75210 1.02954 1.02441 1.86255 1.23457 1.31601 1.87428 1.17483 0.81722 0.81801 0.76529 1.90956 1.63848 1.35141 1.57565 1.48642 1.00085 1.14628 1.74364 1.23438 0.82902 0.94311 1.01152 1.23157 0.96919 0.92528 0.99657 1.18669 0.85949 0.94984 0.95432 0.94747 1.20996 1.01544 0.96256 1.35975 0.92582 1.24898 0.96729 0.96730 0.95217 1.69871 1.10272 1.32640 1.39765 0.86758 0.77865 0.85629 0.78355 1.20359 1.21472 1.20305 1.21156 1.03355 0.91807 0.94592 1.21728 0.98880 1.01069 0.96921 1.22079 0.99902 0.98744 1.00085 1.23146 0.81546 0.91384 1.01784 0.92141 0.92164 0.88343 0.91028 0.89723 0.88701 0.92949 0.88531 0.94770 0.95777 0.91998 0.93814 0.94794 0.93765 0.89063 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 10.56 101.05 1.07 1.72 16 2 O -0.37 -5.94 10.59 -40.29 -0.43 -6.36 16 3 C 0.67 12.54 8.96 54.06 0.48 13.02 16 4 O -0.58 -12.39 16.91 -19.28 -0.33 -12.71 16 5 N -0.64 -11.51 3.69 -191.23 -0.71 -12.22 16 6 C 0.10 1.71 6.48 -8.64 -0.06 1.65 16 7 C -0.10 -1.89 2.73 -90.23 -0.25 -2.13 16 8 C 0.07 1.47 1.44 -91.77 -0.13 1.33 16 9 H 0.03 0.81 7.90 -51.93 -0.41 0.40 16 10 C -0.51 -12.31 6.78 -34.44 -0.23 -12.55 16 11 H 0.06 1.35 7.66 -52.49 -0.40 0.95 16 12 C 0.07 1.68 5.36 -17.82 -0.10 1.58 16 13 N -0.89 -23.44 11.56 55.43 0.64 -22.80 16 14 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C -0.09 -1.85 2.59 -90.62 -0.23 -2.09 16 19 C -0.13 -2.48 8.66 37.16 0.32 -2.16 16 20 C -0.15 -2.60 8.62 37.16 0.32 -2.28 16 21 C 0.14 2.60 7.62 -8.49 -0.06 2.54 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.08 7.03 -51.93 -0.36 0.71 16 26 H 0.08 1.35 7.94 -51.93 -0.41 0.94 16 27 H 0.09 1.73 6.13 -51.93 -0.32 1.41 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.10 2.32 6.34 -51.93 -0.33 1.99 16 30 H 0.03 0.60 6.22 -51.93 -0.32 0.28 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.31 7.23 -51.93 -0.38 0.93 16 33 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.69 4.94 -51.93 -0.26 0.44 16 36 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 298.19 15.07 4.49 4.49 Total: -1.00 -28.07 298.19 -5.92 -33.99 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.71 Total: -0.17 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 1.13 Total: 0.65 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.07 Total: -35.02 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.75 Total: -19.07 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.07 -5.92 -33.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.520 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds