Wall clock time and date at job start Mon Mar 30 2020 04:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34629 * 116.99663 * 2 1 4 4 O 1.21514 * 120.00506 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99848 * 180.02562 * 3 2 1 6 6 C 1.47070 * 136.05457 * 359.62914 * 5 3 2 7 7 C 1.53232 * 88.07961 * 207.20410 * 6 5 3 8 8 C 1.53002 * 114.32404 * 220.46895 * 7 6 5 9 9 H 1.08996 * 109.47366 * 33.75900 * 8 7 6 10 10 C 1.50708 * 109.47136 * 153.76113 * 8 7 6 11 11 H 1.07994 * 120.00099 * 5.62368 * 10 8 7 12 12 C 1.37879 * 119.99727 * 185.62616 * 10 8 7 13 13 N 1.31512 * 120.00102 * 355.18723 * 12 10 8 14 14 Si 1.86796 * 119.99368 * 175.18906 * 12 10 8 15 15 H 1.48499 * 109.47509 * 60.00471 * 14 12 10 16 16 H 1.48504 * 109.46691 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47561 * 299.99678 * 14 12 10 18 18 C 1.52995 * 109.47378 * 273.75905 * 8 7 6 19 19 C 1.53005 * 109.47236 * 300.35833 * 18 8 7 20 20 C 1.53000 * 109.47261 * 60.35412 * 18 8 7 21 21 C 1.47064 * 136.05883 * 179.97438 * 5 3 2 22 22 H 1.08998 * 109.47273 * 300.00353 * 1 2 3 23 23 H 1.09003 * 109.46813 * 60.00267 * 1 2 3 24 24 H 1.09005 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.09001 * 113.46486 * 321.93482 * 6 5 3 26 26 H 1.08998 * 113.46737 * 92.37464 * 6 5 3 27 27 H 1.09002 * 114.20325 * 87.72808 * 7 6 5 28 28 H 0.97001 * 119.99939 * 179.97438 * 13 12 10 29 29 H 1.08996 * 109.47558 * 180.35764 * 18 8 7 30 30 H 1.08996 * 109.46903 * 59.99530 * 19 18 8 31 31 H 1.09000 * 109.47419 * 179.97438 * 19 18 8 32 32 H 1.09003 * 109.46538 * 299.99455 * 19 18 8 33 33 H 1.09011 * 109.47092 * 64.49751 * 20 18 8 34 34 H 1.08992 * 109.47588 * 184.49929 * 20 18 8 35 35 H 1.09003 * 109.47362 * 304.50010 * 20 18 8 36 36 H 1.08996 * 113.46973 * 267.62131 * 21 5 3 37 37 H 1.09004 * 113.46707 * 38.00866 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.5201 0.3064 0.0054 7 6 5.3739 1.3733 0.6989 8 6 6.8175 1.4488 0.1977 9 1 6.8454 1.2150 -0.8665 10 6 7.3547 2.8391 0.4208 11 1 6.7631 3.5672 0.9558 12 6 8.6015 3.1815 -0.0581 13 7 9.3609 2.2702 -0.6258 14 14 9.2118 4.9399 0.0996 15 1 9.2619 5.3198 1.5343 16 1 10.5716 5.0463 -0.4878 17 1 8.2877 5.8513 -0.6218 18 6 7.6768 0.4411 0.9638 19 6 7.6306 0.7639 2.4587 20 6 7.1369 -0.9713 0.7303 21 6 4.4132 2.3447 -0.0012 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.3321 -0.5687 0.6274 26 1 4.8750 0.0470 -0.9919 27 1 5.2948 1.3718 1.7860 28 1 10.2379 2.5112 -0.9630 29 1 8.7065 0.4994 0.6113 30 1 6.6009 0.7057 2.8113 31 1 8.2424 0.0457 3.0047 32 1 8.0154 1.7701 2.6251 33 1 7.2436 -1.2315 -0.3229 34 1 7.6986 -1.6802 1.3384 35 1 6.0837 -1.0083 1.0087 36 1 4.7395 2.6333 -1.0003 37 1 4.1342 3.1999 0.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:03 Heat of formation + Delta-G solvation = -68.966454 kcal Electronic energy + Delta-G solvation = -18097.039719 eV Core-core repulsion = 15261.109189 eV Total energy + Delta-G solvation = -2835.930530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77836 -40.29503 -37.45122 -36.83916 -33.94899 -31.51312 -29.17313 -28.17456 -27.40775 -26.62291 -25.06071 -22.77475 -21.01052 -19.92496 -18.92137 -18.16322 -18.00607 -17.52145 -16.56460 -16.18998 -15.44824 -15.39127 -14.72525 -14.51338 -14.21517 -14.07168 -13.60293 -13.49739 -13.04653 -12.96254 -12.82715 -12.74719 -12.48494 -12.30535 -11.88227 -11.82808 -11.81244 -11.70542 -11.29274 -11.16506 -10.73680 -10.41181 -10.23245 -9.81292 -7.97533 -6.04987 1.02077 1.47268 1.50069 1.54559 1.68667 2.51660 2.94441 3.32492 3.67012 4.13256 4.25783 4.34319 4.35382 4.39917 4.57152 4.64900 4.66272 4.72964 4.74996 4.76027 4.80599 5.00997 5.10573 5.21469 5.27376 5.29342 5.44091 5.49461 5.74545 5.84134 5.90221 6.11300 6.31160 6.52168 6.68222 7.04855 7.13729 7.60676 9.06971 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.006577 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.669938 B = 4256.382713 C = 4913.389301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.373 6.373 3 C 0.667 3.333 4 O -0.616 6.616 5 N -0.638 5.638 6 C 0.115 3.885 7 C -0.096 4.096 8 C 0.072 3.928 9 H 0.010 0.990 10 C -0.509 4.509 11 H 0.052 0.948 12 C 0.023 3.977 13 N -0.912 5.912 14 Si 0.932 3.068 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.277 1.277 18 C -0.091 4.091 19 C -0.122 4.122 20 C -0.142 4.142 21 C 0.138 3.862 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.140 0.860 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.256 0.744 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 -7.352 2.382 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.287 6.287 3 C 0.423 3.577 4 O -0.509 6.509 5 N -0.379 5.379 6 C -0.006 4.006 7 C -0.115 4.115 8 C 0.052 3.948 9 H 0.028 0.972 10 C -0.548 4.548 11 H 0.071 0.929 12 C -0.176 4.176 13 N -0.552 5.552 14 Si 0.760 3.240 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.202 1.202 18 C -0.110 4.110 19 C -0.179 4.179 20 C -0.199 4.199 21 C 0.017 3.983 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.158 0.842 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.440 -7.122 2.291 12.844 hybrid contribution 0.502 1.329 -0.236 1.440 sum -9.937 -5.793 2.055 11.685 Atomic orbital electron populations 1.23524 0.72746 1.05716 1.02498 1.86265 1.25790 1.29718 1.86890 1.17609 0.81718 0.82251 0.76072 1.90931 1.64558 1.36451 1.58953 1.48617 1.00326 1.14812 1.74137 1.23406 0.81418 0.94183 1.01626 1.22943 0.94937 0.93752 0.99878 1.18542 0.88107 0.93845 0.94260 0.97217 1.21322 1.01125 0.97659 1.34662 0.92941 1.25460 0.97321 0.99180 0.95665 1.69995 1.10355 1.33751 1.41128 0.86016 0.77125 0.82689 0.78169 1.20137 1.21842 1.20238 1.21025 1.01097 0.93777 0.95099 1.21639 1.00207 0.99893 0.96197 1.21962 1.01110 0.96516 1.00338 1.23090 0.82093 0.91677 1.01416 0.92089 0.92208 0.84207 0.88646 0.89191 0.88117 0.93453 0.92390 0.92857 0.94248 0.94628 0.94053 0.93422 0.91733 0.89751 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 10.56 113.37 1.20 2.18 16 2 O -0.37 -10.89 10.59 -55.39 -0.59 -11.48 16 3 C 0.67 23.90 8.96 129.79 1.16 25.07 16 4 O -0.62 -25.55 16.91 19.80 0.33 -25.22 16 5 N -0.64 -22.00 3.69 -989.34 -3.65 -25.65 16 6 C 0.11 3.48 6.48 83.09 0.54 4.02 16 7 C -0.10 -3.35 2.73 -10.54 -0.03 -3.38 16 8 C 0.07 3.03 1.44 -11.54 -0.02 3.02 16 9 H 0.01 0.46 7.90 -2.39 -0.02 0.44 16 10 C -0.51 -24.75 6.78 25.60 0.17 -24.58 16 11 H 0.05 2.54 7.66 -2.91 -0.02 2.52 16 12 C 0.02 1.16 5.36 84.66 0.45 1.61 16 13 N -0.91 -49.23 11.56 21.45 0.25 -48.98 16 14 Si 0.93 41.75 29.54 68.60 2.03 43.78 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 C -0.09 -3.66 2.59 -10.79 -0.03 -3.69 16 19 C -0.12 -4.52 8.66 71.98 0.62 -3.89 16 20 C -0.14 -4.56 8.62 71.98 0.62 -3.94 16 21 C 0.14 4.98 7.62 83.19 0.63 5.61 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.14 1.62 8.14 -2.38 -0.02 1.61 16 25 H 0.10 2.48 7.03 -2.39 -0.02 2.46 16 26 H 0.09 2.67 7.94 -2.39 -0.02 2.65 16 27 H 0.10 3.43 6.13 -2.39 -0.01 3.42 16 28 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.06 2.82 6.34 -2.39 -0.02 2.80 16 30 H 0.05 1.74 6.22 -2.39 -0.01 1.73 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.03 1.47 7.23 -2.39 -0.02 1.46 16 33 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.79 4.94 -2.39 -0.01 1.78 16 36 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -60.18 298.19 4.74 -55.44 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.04 Total: 10.10 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.33 Total: 2.01 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -3.41 Total: -74.63 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.25 Total: -36.70 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.18 4.74 -55.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.530 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds