Wall clock time and date at job start Mon Mar 30 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 C 1.52996 * 109.47161 * 239.99470 * 2 1 3 5 5 C 1.53004 * 109.46908 * 119.99748 * 2 1 3 6 6 N 1.46500 * 109.47118 * 59.99638 * 5 2 1 7 7 C 1.46093 * 118.73309 * 270.00061 * 6 5 2 8 8 C 1.53018 * 109.91864 * 161.60077 * 7 6 5 9 9 H 1.08997 * 109.74065 * 289.34630 * 8 7 6 10 10 C 1.50702 * 109.60246 * 168.93546 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.82436 * 10 8 7 12 12 C 1.37884 * 119.99942 * 180.53995 * 10 8 7 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 8 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 8 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 O 1.43244 * 108.66992 * 49.18292 * 8 7 6 19 19 C 1.42969 * 112.98840 * 291.63428 * 18 8 7 20 20 C 1.33867 * 118.72896 * 90.00072 * 6 5 2 21 21 O 1.21290 * 118.83529 * 1.90708 * 20 6 5 22 22 H 1.09001 * 109.47269 * 300.00666 * 1 2 3 23 23 H 1.09000 * 109.46483 * 60.00158 * 1 2 3 24 24 H 1.08993 * 109.46987 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46983 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47304 * 299.99339 * 3 2 1 27 27 H 1.08992 * 109.47371 * 60.00086 * 3 2 1 28 28 H 1.09001 * 109.47136 * 300.00160 * 4 2 1 29 29 H 1.08997 * 109.47101 * 60.00223 * 4 2 1 30 30 H 1.09001 * 109.47191 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46942 * 300.00400 * 5 2 1 32 32 H 1.08994 * 109.47314 * 179.97438 * 5 2 1 33 33 H 1.09004 * 109.38190 * 41.47563 * 7 6 5 34 34 H 1.08999 * 109.41341 * 281.74783 * 7 6 5 35 35 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 36 36 H 1.08990 * 109.41347 * 169.70047 * 19 18 8 37 37 H 1.08997 * 109.41096 * 289.49501 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2494 7 6 0.2715 -2.3946 1.8899 8 6 -0.2626 -3.7412 1.3972 9 1 -0.5809 -3.6532 0.3585 10 6 -1.4309 -4.1644 2.2499 11 1 -1.7697 -3.5295 3.0553 12 6 -2.0711 -5.3594 1.9982 13 7 -3.0941 -5.7261 2.7390 14 14 -1.4853 -6.4575 0.6052 15 1 -0.4587 -7.4007 1.1167 16 1 -2.6353 -7.2243 0.0623 17 1 -0.8963 -5.6204 -0.4707 18 8 0.7837 -4.7143 1.4985 19 6 1.8529 -4.4824 0.5781 20 6 2.2955 -3.0480 0.6625 21 8 3.3645 -2.7366 0.1815 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2076 -2.1391 30 1 3.1301 -0.7217 -1.2489 31 1 1.6766 -0.2074 2.1393 32 1 3.1299 -0.7217 1.2492 33 1 -0.4437 -1.6096 1.6439 34 1 0.4075 -2.4327 2.9707 35 1 -3.5441 -6.5669 2.5621 36 1 2.6904 -5.1351 0.8239 37 1 1.5122 -4.6975 -0.4346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260710497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:04 Heat of formation + Delta-G solvation = -83.624927 kcal Electronic energy + Delta-G solvation = -18832.038074 eV Core-core repulsion = 15995.471905 eV Total energy + Delta-G solvation = -2836.566169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41196 -37.34163 -36.87862 -33.91367 -32.80427 -29.98871 -27.87293 -27.20711 -27.16217 -25.51582 -24.64755 -21.67590 -19.05608 -18.34658 -17.44356 -16.70587 -16.24514 -15.64629 -14.74691 -14.59207 -14.43131 -14.07277 -13.80385 -13.28643 -13.15638 -12.81822 -12.62148 -12.18625 -12.10917 -11.88360 -11.48129 -11.29611 -11.18503 -11.01177 -10.91872 -10.65799 -10.55187 -10.40022 -9.88690 -9.82338 -9.44080 -8.77873 -8.58310 -8.23544 -6.29161 -4.41137 2.93903 3.31033 3.32959 3.37009 3.42596 4.32811 4.57231 4.81517 4.86227 5.00431 5.04145 5.34296 5.49494 5.58098 5.62194 5.68957 5.70517 5.78619 5.83943 5.87972 5.94447 5.97368 6.00582 6.07277 6.14348 6.19512 6.28013 6.47402 6.53663 6.71712 6.80910 7.28122 7.75242 8.05075 8.21026 8.50585 8.69238 9.31012 10.80004 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032373 B = 0.008146 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.723744 B = 3436.392786 C = 3815.674613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.090 3.910 8 C 0.169 3.831 9 H 0.029 0.971 10 C -0.519 4.519 11 H 0.087 0.913 12 C 0.088 3.912 13 N -0.881 5.881 14 Si 0.906 3.094 15 H -0.272 1.272 16 H -0.298 1.298 17 H -0.272 1.272 18 O -0.373 6.373 19 C 0.037 3.963 20 C 0.493 3.507 21 O -0.561 6.561 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.270 0.730 36 H 0.113 0.887 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 9.738 -5.268 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.187 4.187 5 C -0.005 4.005 6 N -0.330 5.330 7 C -0.032 4.032 8 C 0.113 3.887 9 H 0.046 0.954 10 C -0.555 4.555 11 H 0.105 0.895 12 C -0.118 4.118 13 N -0.517 5.517 14 Si 0.735 3.265 15 H -0.197 1.197 16 H -0.225 1.225 17 H -0.197 1.197 18 O -0.293 6.293 19 C -0.044 4.044 20 C 0.282 3.718 21 O -0.441 6.441 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.591 9.600 -5.316 13.343 hybrid contribution 0.151 -0.436 -0.763 0.892 sum 7.742 9.163 -6.078 13.448 Atomic orbital electron populations 1.22054 0.94342 1.02741 1.01366 1.20954 0.96162 0.95322 0.96197 1.21786 1.00916 0.95047 1.01645 1.21812 1.01338 0.99870 0.95729 1.21543 1.00277 0.81638 0.96999 1.47660 1.22057 1.07561 1.55693 1.22449 0.82913 1.00050 0.97789 1.20694 0.86217 0.84261 0.97506 0.95395 1.20711 1.09021 1.07275 1.18540 0.89507 1.25012 0.93473 0.97168 0.96185 1.69898 1.20403 1.22661 1.38738 0.86381 0.77582 0.80654 0.81903 1.19709 1.22537 1.19684 1.88527 1.30000 1.53262 1.57475 1.22614 0.93462 0.91796 0.96480 1.21122 0.84258 0.89103 0.77367 1.90640 1.22803 1.82629 1.48073 0.92613 0.92958 0.91439 0.92668 0.92591 0.92676 0.93058 0.93628 0.92122 0.90809 0.89987 0.89796 0.91168 0.92060 0.86888 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 7.21 37.16 0.27 -1.66 16 2 C -0.09 -1.12 0.84 -154.51 -0.13 -1.25 16 3 C -0.14 -1.44 8.47 37.15 0.31 -1.12 16 4 C -0.13 -1.88 7.13 37.16 0.26 -1.62 16 5 C 0.12 1.72 4.56 -4.04 -0.02 1.71 16 6 N -0.60 -10.43 2.39 -174.41 -0.42 -10.85 16 7 C 0.09 1.68 5.12 -4.25 -0.02 1.66 16 8 C 0.17 3.79 1.99 -27.87 -0.06 3.73 16 9 H 0.03 0.64 7.17 -51.93 -0.37 0.27 16 10 C -0.52 -13.71 9.36 -34.44 -0.32 -14.03 16 11 H 0.09 2.41 7.99 -52.49 -0.42 1.99 16 12 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 13 N -0.88 -25.54 13.96 55.43 0.77 -24.76 16 14 Si 0.91 21.88 26.19 -169.99 -4.45 17.42 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.28 6.55 56.52 0.37 -5.91 16 18 O -0.37 -8.45 8.21 -35.23 -0.29 -8.74 16 19 C 0.04 0.70 6.99 35.84 0.25 0.95 16 20 C 0.49 9.34 5.92 -11.56 -0.07 9.27 16 21 O -0.56 -11.24 14.52 5.55 0.08 -11.16 16 22 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.02 5.79 -51.93 -0.30 0.72 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.85 6.17 -51.93 -0.32 0.53 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 31 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 32 H 0.08 1.26 7.23 -51.93 -0.38 0.88 16 33 H 0.08 1.43 5.48 -51.93 -0.28 1.14 16 34 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 286.11 15.07 4.31 4.31 Total: -1.00 -29.29 286.11 -5.46 -34.75 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.85 Total: -0.93 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.38 Total: -0.04 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.36 Total: -35.61 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.21 Total: -19.90 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.45 Total: 17.42 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.29 -5.46 -34.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.875 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds