Wall clock time and date at job start Mon Mar 30 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 C 1.52996 * 109.47161 * 239.99470 * 2 1 3 5 5 C 1.53004 * 109.46908 * 119.99748 * 2 1 3 6 6 N 1.46500 * 109.47118 * 59.99638 * 5 2 1 7 7 C 1.46093 * 118.73309 * 270.00061 * 6 5 2 8 8 C 1.53018 * 109.91864 * 161.60077 * 7 6 5 9 9 H 1.08997 * 109.74065 * 289.34630 * 8 7 6 10 10 C 1.50702 * 109.60246 * 168.93546 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.82436 * 10 8 7 12 12 C 1.37884 * 119.99942 * 180.53995 * 10 8 7 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 8 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 8 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 O 1.43244 * 108.66992 * 49.18292 * 8 7 6 19 19 C 1.42969 * 112.98840 * 291.63428 * 18 8 7 20 20 C 1.33867 * 118.72896 * 90.00072 * 6 5 2 21 21 O 1.21290 * 118.83529 * 1.90708 * 20 6 5 22 22 H 1.09001 * 109.47269 * 300.00666 * 1 2 3 23 23 H 1.09000 * 109.46483 * 60.00158 * 1 2 3 24 24 H 1.08993 * 109.46987 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46983 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47304 * 299.99339 * 3 2 1 27 27 H 1.08992 * 109.47371 * 60.00086 * 3 2 1 28 28 H 1.09001 * 109.47136 * 300.00160 * 4 2 1 29 29 H 1.08997 * 109.47101 * 60.00223 * 4 2 1 30 30 H 1.09001 * 109.47191 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46942 * 300.00400 * 5 2 1 32 32 H 1.08994 * 109.47314 * 179.97438 * 5 2 1 33 33 H 1.09004 * 109.38190 * 41.47563 * 7 6 5 34 34 H 1.08999 * 109.41341 * 281.74783 * 7 6 5 35 35 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 36 36 H 1.08990 * 109.41347 * 169.70047 * 19 18 8 37 37 H 1.08997 * 109.41096 * 289.49501 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2494 7 6 0.2715 -2.3946 1.8899 8 6 -0.2626 -3.7412 1.3972 9 1 -0.5809 -3.6532 0.3585 10 6 -1.4309 -4.1644 2.2499 11 1 -1.7697 -3.5295 3.0553 12 6 -2.0711 -5.3594 1.9982 13 7 -3.0941 -5.7261 2.7390 14 14 -1.4853 -6.4575 0.6052 15 1 -0.4587 -7.4007 1.1167 16 1 -2.6353 -7.2243 0.0623 17 1 -0.8963 -5.6204 -0.4707 18 8 0.7837 -4.7143 1.4985 19 6 1.8529 -4.4824 0.5781 20 6 2.2955 -3.0480 0.6625 21 8 3.3645 -2.7366 0.1815 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2076 -2.1391 30 1 3.1301 -0.7217 -1.2489 31 1 1.6766 -0.2074 2.1393 32 1 3.1299 -0.7217 1.2492 33 1 -0.4437 -1.6096 1.6439 34 1 0.4075 -2.4327 2.9707 35 1 -3.5441 -6.5669 2.5621 36 1 2.6904 -5.1351 0.8239 37 1 1.5122 -4.6975 -0.4346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260710497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:03 Heat of formation + Delta-G solvation = -102.348934 kcal Electronic energy + Delta-G solvation = -18832.850008 eV Core-core repulsion = 15995.471905 eV Total energy + Delta-G solvation = -2837.378103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86271 -38.84719 -38.24927 -35.30663 -34.83266 -31.73452 -29.27295 -28.34462 -28.13397 -27.20478 -26.04498 -23.41700 -20.35540 -19.80866 -19.22437 -18.30903 -17.70194 -17.15424 -16.36057 -16.27958 -15.81515 -15.36764 -15.22423 -14.68552 -14.60057 -14.37815 -14.14601 -13.56873 -13.28996 -13.04258 -12.93355 -12.82198 -12.56193 -12.39572 -12.29126 -12.02919 -11.75862 -11.67541 -11.62399 -11.56174 -11.21551 -10.86231 -10.18049 -9.64137 -8.39415 -6.54281 1.36329 1.42423 1.46789 1.50656 1.94050 2.33706 2.73240 3.41666 3.45782 3.81430 3.86987 3.97965 4.07817 4.20415 4.29916 4.36989 4.49901 4.55156 4.59367 4.73678 4.76940 4.84698 4.90838 4.98523 5.04773 5.08752 5.17972 5.26121 5.30943 5.42196 5.46830 5.54509 6.06811 6.22184 6.42863 6.60133 7.03313 7.21629 8.73200 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032373 B = 0.008146 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.723744 B = 3436.392786 C = 3815.674613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.126 4.126 5 C 0.114 3.886 6 N -0.594 5.594 7 C 0.102 3.898 8 C 0.171 3.829 9 H 0.028 0.972 10 C -0.523 4.523 11 H 0.062 0.938 12 C 0.038 3.962 13 N -0.925 5.925 14 Si 0.956 3.044 15 H -0.274 1.274 16 H -0.294 1.294 17 H -0.256 1.256 18 O -0.393 6.393 19 C 0.031 3.969 20 C 0.490 3.510 21 O -0.574 6.574 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.134 0.866 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.205 11.054 -6.309 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.188 4.188 4 C -0.183 4.183 5 C -0.007 4.007 6 N -0.325 5.325 7 C -0.020 4.020 8 C 0.116 3.884 9 H 0.046 0.954 10 C -0.560 4.560 11 H 0.080 0.920 12 C -0.164 4.164 13 N -0.563 5.563 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.221 1.221 17 H -0.180 1.180 18 O -0.313 6.313 19 C -0.048 4.048 20 C 0.279 3.721 21 O -0.456 6.456 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.596 10.944 -6.360 15.300 hybrid contribution -0.118 -0.794 -0.416 0.904 sum 8.478 10.149 -6.776 14.859 Atomic orbital electron populations 1.22024 0.94138 1.01482 1.02666 1.20955 0.96223 0.96612 0.94588 1.21738 1.01031 0.93106 1.02925 1.21762 1.00537 0.98721 0.97285 1.21782 0.99956 0.80171 0.98839 1.47635 1.21276 1.08703 1.54921 1.22201 0.83817 0.98641 0.97342 1.20481 0.85482 0.85866 0.96618 0.95427 1.20945 1.10490 1.06661 1.17942 0.92014 1.25763 0.93616 0.98679 0.98329 1.70001 1.22051 1.23532 1.40764 0.85572 0.77147 0.79156 0.79836 1.19919 1.22131 1.18000 1.88415 1.30773 1.53440 1.58674 1.22851 0.92963 0.92668 0.96323 1.21054 0.84235 0.89263 0.77538 1.90638 1.23280 1.82800 1.48857 0.91365 0.91708 0.93859 0.92503 0.91513 0.91248 0.95631 0.92116 0.93217 0.88756 0.90635 0.87982 0.91635 0.91907 0.84828 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 7.21 71.98 0.52 -2.90 16 2 C -0.08 -1.95 0.84 -52.18 -0.04 -1.99 16 3 C -0.13 -2.30 8.47 71.98 0.61 -1.69 16 4 C -0.13 -3.40 7.13 71.98 0.51 -2.89 16 5 C 0.11 3.06 4.56 86.38 0.39 3.46 16 6 N -0.59 -19.73 2.39 -824.60 -1.97 -21.70 16 7 C 0.10 3.69 5.12 86.46 0.44 4.13 16 8 C 0.17 7.55 1.99 29.85 0.06 7.61 16 9 H 0.03 1.24 7.17 -2.39 -0.02 1.22 16 10 C -0.52 -27.88 9.36 25.60 0.24 -27.64 16 11 H 0.06 3.51 7.99 -2.91 -0.02 3.49 16 12 C 0.04 2.11 5.47 84.66 0.46 2.58 16 13 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 14 Si 0.96 44.66 26.19 68.60 1.80 46.46 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.26 -11.13 6.55 99.48 0.65 -10.47 16 18 O -0.39 -17.30 8.21 -148.98 -1.22 -18.53 16 19 C 0.03 1.14 6.99 71.13 0.50 1.63 16 20 C 0.49 17.82 5.92 87.69 0.52 18.33 16 21 O -0.57 -22.16 14.52 -3.06 -0.04 -22.20 16 22 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.22 5.79 -2.39 -0.01 1.21 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.02 0.80 6.17 -2.39 -0.01 0.79 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.43 7.65 -2.39 -0.02 1.41 16 31 H 0.09 2.14 8.04 -2.39 -0.02 2.12 16 32 H 0.08 2.16 7.23 -2.39 -0.02 2.14 16 33 H 0.10 3.31 5.48 -2.38 -0.01 3.30 16 34 H 0.07 2.44 8.10 -2.39 -0.02 2.42 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.13 4.27 8.14 -2.39 -0.02 4.25 16 37 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -62.39 286.11 4.05 -58.34 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.98 Total: 11.35 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.21 Total: 0.64 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.67 Total: -76.05 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.27 Total: -40.73 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.80 Total: 46.46 kcal Total: -62.39 4.05 -58.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.012 kcal (2) G-P(sol) polarization free energy of solvation -62.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds