Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47111 * 239.99673 * 3 2 1 5 5 H 1.48500 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47288 * 119.99651 * 3 2 1 7 7 C 1.38809 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00530 * 197.35789 * 7 2 1 9 9 N 1.36941 * 119.99902 * 17.35283 * 7 2 1 10 10 C 1.46917 * 120.59066 * 207.61051 * 9 7 2 11 11 C 1.53258 * 108.75334 * 233.35362 * 10 9 7 12 12 H 1.09002 * 109.62685 * 184.94891 * 11 10 9 13 13 C 1.53075 * 109.72924 * 64.50256 * 11 10 9 14 14 O 1.42911 * 109.41101 * 298.18539 * 13 11 10 15 15 C 1.42910 * 114.60082 * 299.73677 * 14 13 11 16 16 C 1.53073 * 109.90745 * 59.92142 * 15 14 13 17 17 H 1.09000 * 109.62867 * 183.20378 * 16 15 14 18 18 C 1.46920 * 120.58483 * 27.63881 * 9 7 2 19 19 C 1.53238 * 109.04367 * 304.96862 * 11 10 9 20 20 C 1.52996 * 109.62276 * 302.45509 * 19 11 10 21 21 C 1.53009 * 109.46985 * 294.58188 * 20 19 11 22 22 O 1.42903 * 109.47034 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99963 * 0.02562 * 1 2 3 24 24 H 1.09010 * 109.58713 * 113.57259 * 10 9 7 25 25 H 1.09001 * 109.71297 * 353.21314 * 10 9 7 26 26 H 1.09004 * 109.48091 * 58.16150 * 13 11 10 27 27 H 1.08995 * 109.48016 * 178.19165 * 13 11 10 28 28 H 1.08997 * 108.50030 * 300.24442 * 15 14 13 29 29 H 1.08994 * 109.97309 * 180.51267 * 15 14 13 30 30 H 1.08998 * 109.59628 * 6.86220 * 18 9 7 31 31 H 1.08997 * 109.59596 * 246.40715 * 18 9 7 32 32 H 1.09001 * 109.54772 * 182.22336 * 19 11 10 33 33 H 1.08997 * 109.47585 * 54.58445 * 20 19 11 34 34 H 1.08998 * 109.47578 * 174.58570 * 20 19 11 35 35 H 1.08992 * 109.47294 * 300.00069 * 21 20 19 36 36 H 1.08995 * 109.46736 * 60.00329 * 21 20 19 37 37 H 0.96702 * 113.99821 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3724 -2.3612 -0.3527 10 6 1.8212 -3.6542 0.1814 11 6 2.0697 -4.6114 -0.9895 12 1 2.3186 -5.6012 -0.6067 13 6 3.2228 -4.0876 -1.8492 14 8 2.8703 -2.8132 -2.3914 15 6 1.7088 -2.8216 -3.2240 16 6 0.4978 -3.3086 -2.4244 17 1 -0.3727 -3.3674 -3.0777 18 6 0.2274 -2.3339 -1.2729 19 6 0.8013 -4.6945 -1.8452 20 6 -0.3730 -5.1560 -0.9799 21 6 -0.1240 -6.5888 -0.5043 22 8 -1.2205 -7.0196 0.3045 23 1 -0.4850 0.8401 -0.0004 24 1 1.0517 -4.0670 0.8339 25 1 2.7442 -3.5188 0.7451 26 1 4.1175 -3.9863 -1.2348 27 1 3.4172 -4.7874 -2.6619 28 1 1.8877 -3.4972 -4.0603 29 1 1.5148 -1.8180 -3.6023 30 1 0.1008 -1.3263 -1.6691 31 1 -0.6754 -2.6365 -0.7423 32 1 0.9558 -5.4037 -2.6584 33 1 -0.4686 -4.4979 -0.1162 34 1 -1.2915 -5.1222 -1.5658 35 1 -0.0284 -7.2468 -1.3679 36 1 0.7944 -6.6226 0.0817 37 1 -1.1300 -7.9213 0.6419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260883825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = -71.083475 kcal Electronic energy + Delta-G solvation = -19233.436766 eV Core-core repulsion = 16397.414435 eV Total energy + Delta-G solvation = -2836.022331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95167 -36.83335 -35.25731 -33.60272 -32.00751 -30.77096 -28.98018 -25.74972 -25.17018 -24.40576 -21.71523 -21.52837 -20.89864 -17.59268 -17.30365 -16.37312 -15.50134 -15.26177 -14.94155 -14.55641 -14.16657 -14.06385 -13.61620 -13.18686 -12.93871 -12.75460 -12.31350 -11.57832 -11.49282 -11.24911 -11.12949 -10.79648 -10.59653 -10.50196 -10.24971 -10.08124 -9.97518 -9.83944 -9.77019 -9.33382 -9.24644 -8.72061 -8.19813 -6.44149 -5.62315 -3.00176 3.48876 3.53975 3.57441 4.35470 4.61677 4.67500 5.09952 5.23790 5.38270 5.43534 5.50858 5.58403 5.66919 5.69576 5.71131 5.77773 5.94426 5.98288 6.18953 6.25424 6.29199 6.36427 6.42080 6.53213 6.54684 6.69714 6.88832 6.95932 6.98591 7.38948 7.71539 7.76071 7.95953 8.08083 8.60628 9.37532 10.01205 10.58254 11.46858 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.008922 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.741731 B = 3137.570894 C = 3510.505188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.005 4.005 3 Si 0.898 3.102 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.060 0.940 9 N -0.573 5.573 10 C 0.156 3.844 11 C -0.143 4.143 12 H 0.064 0.936 13 C 0.080 3.920 14 O -0.347 6.347 15 C 0.085 3.915 16 C -0.149 4.149 17 H 0.065 0.935 18 C 0.182 3.818 19 C -0.065 4.065 20 C -0.116 4.116 21 C 0.077 3.923 22 O -0.575 6.575 23 H 0.251 0.749 24 H 0.020 0.980 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.027 0.973 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -12.291 -4.378 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.202 4.202 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.078 0.922 9 N -0.294 5.294 10 C 0.029 3.971 11 C -0.163 4.163 12 H 0.082 0.918 13 C 0.003 3.997 14 O -0.264 6.264 15 C 0.008 3.992 16 C -0.169 4.169 17 H 0.083 0.917 18 C 0.055 3.945 19 C -0.083 4.083 20 C -0.154 4.154 21 C 0.000 4.000 22 O -0.379 6.379 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.615 -11.339 -4.458 12.291 hybrid contribution 0.466 -0.075 -0.057 0.476 sum 2.082 -11.414 -4.515 12.450 Atomic orbital electron populations 1.70019 1.05088 1.25162 1.55372 1.24914 0.95197 0.98061 1.01993 0.86419 0.78865 0.83802 0.77993 1.21228 1.21976 1.21228 1.19011 0.92270 0.84767 1.39060 0.92216 1.43710 1.35195 1.01009 1.49521 1.20845 0.97426 0.86954 0.91833 1.22382 0.95511 0.99420 0.99014 0.91812 1.22298 0.96524 0.85889 0.95005 1.88028 1.43791 1.28541 1.66022 1.22291 0.85837 1.00439 0.90617 1.22522 0.97828 0.96455 1.00143 0.91681 1.20755 0.88782 0.97598 0.87325 1.20934 0.94302 0.96584 0.96521 1.21626 0.98193 0.94311 1.01239 1.22294 0.88582 0.96288 0.92868 1.86530 1.45722 1.35113 1.70576 0.93934 0.96244 0.93074 0.90041 0.95443 0.95948 0.89642 0.89440 0.96160 0.93063 0.89430 0.91976 0.94539 0.93550 0.78193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.83 11.19 55.49 0.62 -26.21 16 2 C 0.00 -0.14 4.91 -17.43 -0.09 -0.22 16 3 Si 0.90 22.47 29.59 -169.99 -5.03 17.44 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.13 9.07 -15.06 -0.14 -6.27 16 8 H 0.06 1.67 7.89 -52.48 -0.41 1.25 16 9 N -0.57 -14.21 1.77 -172.24 -0.31 -14.52 16 10 C 0.16 3.27 5.45 -3.68 -0.02 3.25 16 11 C -0.14 -2.42 2.51 -90.32 -0.23 -2.65 16 12 H 0.06 0.93 6.73 -51.93 -0.35 0.58 16 13 C 0.08 1.38 6.30 37.20 0.23 1.62 16 14 O -0.35 -7.23 8.91 -35.23 -0.31 -7.55 16 15 C 0.09 1.60 6.24 37.20 0.23 1.83 16 16 C -0.15 -2.81 2.85 -90.32 -0.26 -3.07 16 17 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 18 C 0.18 4.31 4.23 -3.67 -0.02 4.29 16 19 C -0.06 -1.07 2.01 -90.37 -0.18 -1.25 16 20 C -0.12 -1.93 4.24 -26.73 -0.11 -2.04 16 21 C 0.08 1.05 6.82 37.16 0.25 1.31 16 22 O -0.57 -8.01 13.66 -35.23 -0.48 -8.49 16 23 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.42 6.53 -51.92 -0.34 0.09 16 25 H 0.05 1.07 7.94 -51.93 -0.41 0.66 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 31 H 0.02 0.52 6.75 -51.93 -0.35 0.16 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.74 4.91 -51.93 -0.26 1.48 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.60 6.65 -51.93 -0.35 0.26 16 37 H 0.37 3.19 9.12 45.56 0.42 3.60 16 LS Contribution 277.07 15.07 4.18 4.18 Total: -1.00 -31.49 277.07 -6.53 -38.02 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.88 Total: 0.33 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.32 Total: -3.21 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.32 Total: -40.72 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.80 Total: -16.04 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.49 -6.53 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260883825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.064 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds