Wall clock time and date at job start Mon Mar 30 2020 03:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47111 * 239.99673 * 3 2 1 5 5 H 1.48500 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47288 * 119.99651 * 3 2 1 7 7 C 1.38809 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00530 * 197.35789 * 7 2 1 9 9 N 1.36941 * 119.99902 * 17.35283 * 7 2 1 10 10 C 1.46917 * 120.59066 * 207.61051 * 9 7 2 11 11 C 1.53258 * 108.75334 * 233.35362 * 10 9 7 12 12 H 1.09002 * 109.62685 * 184.94891 * 11 10 9 13 13 C 1.53075 * 109.72924 * 64.50256 * 11 10 9 14 14 O 1.42911 * 109.41101 * 298.18539 * 13 11 10 15 15 C 1.42910 * 114.60082 * 299.73677 * 14 13 11 16 16 C 1.53073 * 109.90745 * 59.92142 * 15 14 13 17 17 H 1.09000 * 109.62867 * 183.20378 * 16 15 14 18 18 C 1.46920 * 120.58483 * 27.63881 * 9 7 2 19 19 C 1.53238 * 109.04367 * 304.96862 * 11 10 9 20 20 C 1.52996 * 109.62276 * 302.45509 * 19 11 10 21 21 C 1.53009 * 109.46985 * 294.58188 * 20 19 11 22 22 O 1.42903 * 109.47034 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99963 * 0.02562 * 1 2 3 24 24 H 1.09010 * 109.58713 * 113.57259 * 10 9 7 25 25 H 1.09001 * 109.71297 * 353.21314 * 10 9 7 26 26 H 1.09004 * 109.48091 * 58.16150 * 13 11 10 27 27 H 1.08995 * 109.48016 * 178.19165 * 13 11 10 28 28 H 1.08997 * 108.50030 * 300.24442 * 15 14 13 29 29 H 1.08994 * 109.97309 * 180.51267 * 15 14 13 30 30 H 1.08998 * 109.59628 * 6.86220 * 18 9 7 31 31 H 1.08997 * 109.59596 * 246.40715 * 18 9 7 32 32 H 1.09001 * 109.54772 * 182.22336 * 19 11 10 33 33 H 1.08997 * 109.47585 * 54.58445 * 20 19 11 34 34 H 1.08998 * 109.47578 * 174.58570 * 20 19 11 35 35 H 1.08992 * 109.47294 * 300.00069 * 21 20 19 36 36 H 1.08995 * 109.46736 * 60.00329 * 21 20 19 37 37 H 0.96702 * 113.99821 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3724 -2.3612 -0.3527 10 6 1.8212 -3.6542 0.1814 11 6 2.0697 -4.6114 -0.9895 12 1 2.3186 -5.6012 -0.6067 13 6 3.2228 -4.0876 -1.8492 14 8 2.8703 -2.8132 -2.3914 15 6 1.7088 -2.8216 -3.2240 16 6 0.4978 -3.3086 -2.4244 17 1 -0.3727 -3.3674 -3.0777 18 6 0.2274 -2.3339 -1.2729 19 6 0.8013 -4.6945 -1.8452 20 6 -0.3730 -5.1560 -0.9799 21 6 -0.1240 -6.5888 -0.5043 22 8 -1.2205 -7.0196 0.3045 23 1 -0.4850 0.8401 -0.0004 24 1 1.0517 -4.0670 0.8339 25 1 2.7442 -3.5188 0.7451 26 1 4.1175 -3.9863 -1.2348 27 1 3.4172 -4.7874 -2.6619 28 1 1.8877 -3.4972 -4.0603 29 1 1.5148 -1.8180 -3.6023 30 1 0.1008 -1.3263 -1.6691 31 1 -0.6754 -2.6365 -0.7423 32 1 0.9558 -5.4037 -2.6584 33 1 -0.4686 -4.4979 -0.1162 34 1 -1.2915 -5.1222 -1.5658 35 1 -0.0284 -7.2468 -1.3679 36 1 0.7944 -6.6226 0.0817 37 1 -1.1300 -7.9213 0.6419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260883825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:42 Heat of formation + Delta-G solvation = -94.078453 kcal Electronic energy + Delta-G solvation = -19234.433903 eV Core-core repulsion = 16397.414435 eV Total energy + Delta-G solvation = -2837.019468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43640 -37.93809 -36.87326 -35.30393 -33.53973 -32.65394 -30.42785 -27.33645 -27.15846 -25.65164 -23.45761 -23.09938 -22.25490 -19.23156 -18.68699 -17.84798 -16.97501 -16.83604 -16.37433 -16.34614 -15.64442 -15.52343 -15.05544 -14.92130 -14.47382 -14.31855 -13.85558 -13.12756 -12.99173 -12.97842 -12.66480 -12.54305 -12.38670 -12.08436 -12.02633 -11.74569 -11.64471 -11.46922 -10.99877 -10.85425 -10.68239 -10.51907 -9.98259 -8.45795 -7.75899 -5.15749 1.46084 1.49367 1.55833 2.57803 3.21681 3.33848 3.42200 3.77796 3.87042 3.96812 4.10805 4.22863 4.27924 4.33528 4.44908 4.57596 4.60274 4.69829 4.84251 4.87600 4.87728 4.91734 4.99055 5.01715 5.12227 5.21284 5.28181 5.44916 5.51876 5.59197 5.71078 5.81739 6.49284 6.70401 6.98131 7.26345 7.99602 8.50810 9.29854 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.008922 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.741731 B = 3137.570894 C = 3510.505188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.059 4.059 3 Si 0.958 3.042 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.221 4.221 8 H 0.055 0.945 9 N -0.587 5.587 10 C 0.151 3.849 11 C -0.132 4.132 12 H 0.102 0.898 13 C 0.075 3.925 14 O -0.383 6.383 15 C 0.085 3.915 16 C -0.144 4.144 17 H 0.081 0.919 18 C 0.192 3.808 19 C -0.058 4.058 20 C -0.113 4.113 21 C 0.082 3.918 22 O -0.600 6.600 23 H 0.244 0.756 24 H 0.010 0.990 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.047 0.953 31 H -0.009 1.009 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -14.826 -5.594 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.253 4.253 3 Si 0.787 3.213 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.073 0.927 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.152 4.152 12 H 0.120 0.880 13 C -0.002 4.002 14 O -0.302 6.302 15 C 0.008 3.992 16 C -0.164 4.164 17 H 0.099 0.901 18 C 0.066 3.934 19 C -0.076 4.076 20 C -0.151 4.151 21 C 0.005 3.995 22 O -0.408 6.408 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.938 -13.926 -5.667 15.320 hybrid contribution 0.044 0.654 0.384 0.760 sum 2.982 -13.272 -5.284 14.593 Atomic orbital electron populations 1.70180 1.06356 1.25179 1.57257 1.25578 0.95896 1.00886 1.02929 0.85472 0.77564 0.80241 0.77987 1.21093 1.22359 1.20502 1.19235 0.92131 0.86137 1.37717 0.92750 1.43879 1.35102 1.01669 1.50182 1.20990 0.96539 0.86246 0.93659 1.22291 0.95910 0.99783 0.97218 0.88044 1.22514 0.96343 0.85240 0.96104 1.87975 1.44367 1.31104 1.66731 1.22300 0.85088 1.00444 0.91340 1.22399 0.98919 0.96698 0.98405 0.90107 1.20464 0.87585 0.96815 0.88566 1.20918 0.93834 0.95500 0.97347 1.21525 0.98222 0.95831 0.99532 1.22218 0.88602 0.94567 0.94084 1.86471 1.46122 1.37292 1.70933 0.94663 0.97254 0.93617 0.89826 0.91794 0.92083 0.91563 0.93462 0.99146 0.89182 0.93814 0.92431 0.91508 0.92721 0.75467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 11.19 21.65 0.24 -57.74 16 2 C -0.06 -3.46 4.91 84.86 0.42 -3.04 16 3 Si 0.96 47.49 29.59 68.60 2.03 49.52 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.22 -12.57 9.07 84.03 0.76 -11.81 16 8 H 0.05 3.09 7.89 -2.91 -0.02 3.07 16 9 N -0.59 -29.70 1.77 -698.85 -1.24 -30.94 16 10 C 0.15 6.28 5.45 86.39 0.47 6.75 16 11 C -0.13 -4.05 2.51 -10.60 -0.03 -4.08 16 12 H 0.10 2.42 6.73 -2.39 -0.02 2.40 16 13 C 0.07 2.30 6.30 72.01 0.45 2.75 16 14 O -0.38 -15.31 8.91 -148.98 -1.33 -16.64 16 15 C 0.09 3.03 6.24 72.01 0.45 3.48 16 16 C -0.14 -5.26 2.85 -10.60 -0.03 -5.29 16 17 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 18 C 0.19 9.41 4.23 86.39 0.37 9.78 16 19 C -0.06 -1.72 2.01 -10.63 -0.02 -1.74 16 20 C -0.11 -3.56 4.24 30.60 0.13 -3.43 16 21 C 0.08 1.95 6.82 71.99 0.49 2.44 16 22 O -0.60 -15.24 13.66 -148.98 -2.04 -17.28 16 23 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 24 H 0.01 0.42 6.53 -2.38 -0.02 0.40 16 25 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 26 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 2.68 6.04 -2.39 -0.01 2.66 16 31 H -0.01 -0.51 6.75 -2.39 -0.02 -0.52 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.04 1.75 4.91 -2.39 -0.01 1.74 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.20 6.65 -2.39 -0.02 1.18 16 37 H 0.40 5.59 9.12 -74.06 -0.68 4.91 16 Total: -1.00 -71.02 277.07 1.52 -69.50 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.39 Total: 7.76 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 3.46 Total: -4.18 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -1.00 Total: -88.68 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -3.36 Total: -33.92 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -71.02 1.52 -69.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260883825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.575 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds