Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 C 1.53001 * 109.46963 * 240.00325 * 2 1 3 5 5 N 1.46495 * 109.47142 * 120.00664 * 2 1 3 6 6 C 1.46094 * 118.72896 * 238.80922 * 5 2 1 7 7 C 1.53022 * 109.92874 * 198.31964 * 6 5 2 8 8 C 1.52995 * 109.73954 * 70.68871 * 7 6 5 9 9 C 1.50706 * 109.59998 * 191.09698 * 7 6 5 10 10 H 1.07994 * 120.00232 * 353.53894 * 9 7 6 11 11 C 1.37881 * 119.99832 * 173.53437 * 9 7 6 12 12 N 1.31506 * 119.99945 * 159.02687 * 11 9 7 13 13 Si 1.86796 * 119.99916 * 339.03022 * 11 9 7 14 14 H 1.48506 * 109.46999 * 179.97438 * 13 11 9 15 15 H 1.48505 * 109.47394 * 59.99612 * 13 11 9 16 16 H 1.48507 * 109.47325 * 299.99602 * 13 11 9 17 17 O 1.43245 * 108.67127 * 310.84915 * 7 6 5 18 18 C 1.42969 * 112.98382 * 68.36391 * 17 7 6 19 19 C 1.33875 * 118.73274 * 58.80920 * 5 2 1 20 20 O 1.21286 * 118.83143 * 358.13777 * 19 5 2 21 21 H 1.08998 * 109.46911 * 303.44684 * 1 2 3 22 22 H 1.09003 * 109.47030 * 63.44548 * 1 2 3 23 23 H 1.09000 * 109.47316 * 183.44867 * 1 2 3 24 24 H 1.09003 * 109.47584 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47709 * 300.00225 * 3 2 1 26 26 H 1.09001 * 109.46964 * 60.00251 * 3 2 1 27 27 H 1.08999 * 109.47120 * 300.00113 * 4 2 1 28 28 H 1.08999 * 109.47245 * 60.00015 * 4 2 1 29 29 H 1.08998 * 109.47140 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.38041 * 78.18295 * 6 5 2 31 31 H 1.09006 * 109.40497 * 318.46600 * 6 5 2 32 32 H 1.09008 * 109.46956 * 176.59421 * 8 7 6 33 33 H 1.08991 * 109.47269 * 296.59860 * 8 7 6 34 34 H 1.09003 * 109.47117 * 56.60254 * 8 7 6 35 35 H 0.97007 * 120.00034 * 354.93556 * 12 11 9 36 36 H 1.09005 * 109.41345 * 70.50711 * 18 17 7 37 37 H 1.08996 * 109.41549 * 190.36283 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1960 6 6 2.8779 0.0378 2.1259 7 6 3.6282 -0.9480 3.0242 8 6 4.6841 -1.6929 2.2050 9 6 4.2961 -0.1996 4.1489 10 1 4.2847 0.8802 4.1607 11 6 4.9216 -0.8936 5.1629 12 7 5.8343 -0.2997 5.9004 13 14 4.4728 -2.6772 5.4891 14 1 5.2820 -3.1919 6.6230 15 1 4.7500 -3.4873 4.2758 16 1 3.0298 -2.7706 5.8276 17 8 2.6879 -1.8852 3.5622 18 6 2.1462 -2.7632 2.5724 19 6 1.6597 -1.9651 1.3948 20 8 0.9155 -2.4945 0.5967 21 1 -0.3633 0.5664 0.8575 22 1 -0.3633 0.4594 -0.9193 23 1 -0.3634 -1.0258 0.0618 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9564 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 1.6766 -1.7488 -1.2494 28 1 1.6767 -0.2073 -2.1393 29 1 3.1300 -0.7216 -1.2491 30 1 2.2669 0.6968 2.7427 31 1 3.5965 0.6341 1.5635 32 1 5.2561 -2.3495 2.8608 33 1 4.1934 -2.2870 1.4342 34 1 5.3552 -0.9729 1.7367 35 1 6.1205 0.6018 5.6852 36 1 2.9180 -3.4594 2.2442 37 1 1.3131 -3.3210 2.9999 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -73.865333 kcal Electronic energy + Delta-G solvation = -19268.576052 eV Core-core repulsion = 16432.433090 eV Total energy + Delta-G solvation = -2836.142961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65597 -37.62249 -36.49362 -33.16494 -32.45784 -30.48541 -27.83684 -27.51133 -27.10200 -25.22344 -24.50421 -21.73607 -19.68365 -17.99735 -17.49134 -16.47943 -16.19113 -15.44728 -14.90987 -14.55149 -14.12147 -13.77921 -13.54914 -13.35111 -12.89155 -12.58346 -12.43599 -12.09167 -11.88785 -11.80204 -11.58396 -11.47306 -11.24393 -10.96618 -10.93111 -10.83056 -10.47235 -10.25317 -9.77267 -9.49422 -9.01349 -8.45091 -8.41351 -8.19593 -6.65129 -4.38077 2.95106 3.27886 3.46973 3.56026 3.81189 4.49184 4.68785 4.77980 5.05617 5.15954 5.20635 5.26666 5.53779 5.60864 5.69475 5.72420 5.78904 5.83496 5.89217 5.93376 5.96516 6.06364 6.11331 6.16373 6.25936 6.34920 6.45402 6.52945 6.61966 6.93744 7.04668 7.58250 7.90534 8.06860 8.16093 8.52675 8.68491 9.34958 10.72113 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.009276 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.951896 B = 3017.865253 C = 3432.195336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 C -0.154 4.154 4 C -0.160 4.160 5 N -0.591 5.591 6 C 0.102 3.898 7 C 0.198 3.802 8 C -0.170 4.170 9 C -0.597 4.597 10 H 0.071 0.929 11 C 0.051 3.949 12 N -0.883 5.883 13 Si 1.075 2.925 14 H -0.307 1.307 15 H -0.286 1.286 16 H -0.277 1.277 17 O -0.366 6.366 18 C 0.034 3.966 19 C 0.497 3.503 20 O -0.561 6.561 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.271 0.729 36 H 0.079 0.921 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 0.250 -10.516 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.211 4.211 4 C -0.218 4.218 5 N -0.324 5.324 6 C -0.020 4.020 7 C 0.160 3.840 8 C -0.228 4.228 9 C -0.633 4.633 10 H 0.089 0.911 11 C -0.159 4.159 12 N -0.514 5.514 13 Si 0.907 3.093 14 H -0.236 1.236 15 H -0.213 1.213 16 H -0.204 1.204 17 O -0.287 6.287 18 C -0.046 4.046 19 C 0.285 3.715 20 O -0.442 6.442 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.032 -1.230 -9.700 11.489 hybrid contribution -0.194 1.521 -1.304 2.013 sum -6.226 0.291 -11.005 12.647 Atomic orbital electron populations 1.22240 0.94453 1.04286 1.01084 1.20413 0.94394 0.91995 0.85380 1.22148 1.01805 0.94674 1.02498 1.22183 1.00824 1.02644 0.96108 1.47859 1.49300 1.11890 1.23357 1.22323 0.92913 0.96235 0.90531 1.20086 0.84729 0.85636 0.93560 1.22640 1.00283 1.00618 0.99267 1.21604 1.37186 0.93905 1.10595 0.91084 1.25954 0.91376 1.06403 0.92130 1.70916 1.24357 1.15672 1.40480 0.83591 0.76397 0.74220 0.75116 1.23587 1.21301 1.20375 1.88411 1.60119 1.47639 1.32487 1.22652 0.99575 0.93652 0.88702 1.21067 0.80353 0.82185 0.87849 1.90555 1.37147 1.69622 1.46846 0.93021 0.92454 0.89779 0.91684 0.91523 0.91781 0.90461 0.92277 0.92896 0.91558 0.90600 0.91678 0.95331 0.92313 0.91911 0.90293 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.40 37.16 0.31 -2.05 16 2 C 0.16 2.45 1.03 -131.82 -0.14 2.31 16 3 C -0.15 -1.96 7.35 37.15 0.27 -1.69 16 4 C -0.16 -2.27 8.39 37.16 0.31 -1.96 16 5 N -0.59 -10.58 2.72 -159.54 -0.43 -11.02 16 6 C 0.10 1.96 4.15 -4.25 -0.02 1.94 16 7 C 0.20 4.41 0.65 -91.76 -0.06 4.35 16 8 C -0.17 -3.54 7.76 37.16 0.29 -3.25 16 9 C -0.60 -15.59 8.61 -34.44 -0.30 -15.89 16 10 H 0.07 1.94 8.00 -52.49 -0.42 1.52 16 11 C 0.05 1.39 5.27 -17.82 -0.09 1.30 16 12 N -0.88 -25.67 13.69 55.43 0.76 -24.91 16 13 Si 1.08 26.12 24.75 -169.99 -4.21 21.92 16 14 H -0.31 -7.57 7.11 56.52 0.40 -7.17 16 15 H -0.29 -6.44 5.94 56.52 0.34 -6.10 16 16 H -0.28 -6.65 6.96 56.52 0.39 -6.26 16 17 O -0.37 -8.26 6.56 -35.23 -0.23 -8.49 16 18 C 0.03 0.65 6.32 35.83 0.23 0.87 16 19 C 0.50 9.50 6.24 -11.56 -0.07 9.43 16 20 O -0.56 -11.18 12.75 5.55 0.07 -11.11 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.41 5.77 -51.93 -0.30 1.11 16 24 H 0.06 0.84 6.77 -51.93 -0.35 0.49 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.83 7.69 -51.93 -0.40 0.43 16 27 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 31 H 0.08 1.35 6.15 -51.93 -0.32 1.04 16 32 H 0.06 1.43 5.26 -51.92 -0.27 1.16 16 33 H 0.03 0.54 5.80 -51.93 -0.30 0.24 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.27 7.72 8.73 -40.82 -0.36 7.36 16 36 H 0.08 1.43 6.82 -51.93 -0.35 1.08 16 37 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 276.80 15.07 4.17 4.17 Total: -1.00 -28.88 276.80 -4.77 -33.65 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.64 Total: 0.44 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 0.74 Total: -4.65 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.33 Total: -35.93 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.16 Total: -19.60 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -4.21 Total: 21.92 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.88 -4.77 -33.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.216 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds