Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 C 1.53001 * 109.46963 * 240.00325 * 2 1 3 5 5 N 1.46495 * 109.47142 * 120.00664 * 2 1 3 6 6 C 1.46094 * 118.72896 * 238.80922 * 5 2 1 7 7 C 1.53022 * 109.92874 * 198.31964 * 6 5 2 8 8 C 1.52995 * 109.73954 * 70.68871 * 7 6 5 9 9 C 1.50706 * 109.59998 * 191.09698 * 7 6 5 10 10 H 1.07994 * 120.00232 * 353.53894 * 9 7 6 11 11 C 1.37881 * 119.99832 * 173.53437 * 9 7 6 12 12 N 1.31506 * 119.99945 * 159.02687 * 11 9 7 13 13 Si 1.86796 * 119.99916 * 339.03022 * 11 9 7 14 14 H 1.48506 * 109.46999 * 179.97438 * 13 11 9 15 15 H 1.48505 * 109.47394 * 59.99612 * 13 11 9 16 16 H 1.48507 * 109.47325 * 299.99602 * 13 11 9 17 17 O 1.43245 * 108.67127 * 310.84915 * 7 6 5 18 18 C 1.42969 * 112.98382 * 68.36391 * 17 7 6 19 19 C 1.33875 * 118.73274 * 58.80920 * 5 2 1 20 20 O 1.21286 * 118.83143 * 358.13777 * 19 5 2 21 21 H 1.08998 * 109.46911 * 303.44684 * 1 2 3 22 22 H 1.09003 * 109.47030 * 63.44548 * 1 2 3 23 23 H 1.09000 * 109.47316 * 183.44867 * 1 2 3 24 24 H 1.09003 * 109.47584 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47709 * 300.00225 * 3 2 1 26 26 H 1.09001 * 109.46964 * 60.00251 * 3 2 1 27 27 H 1.08999 * 109.47120 * 300.00113 * 4 2 1 28 28 H 1.08999 * 109.47245 * 60.00015 * 4 2 1 29 29 H 1.08998 * 109.47140 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.38041 * 78.18295 * 6 5 2 31 31 H 1.09006 * 109.40497 * 318.46600 * 6 5 2 32 32 H 1.09008 * 109.46956 * 176.59421 * 8 7 6 33 33 H 1.08991 * 109.47269 * 296.59860 * 8 7 6 34 34 H 1.09003 * 109.47117 * 56.60254 * 8 7 6 35 35 H 0.97007 * 120.00034 * 354.93556 * 12 11 9 36 36 H 1.09005 * 109.41345 * 70.50711 * 18 17 7 37 37 H 1.08996 * 109.41549 * 190.36283 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1960 6 6 2.8779 0.0378 2.1259 7 6 3.6282 -0.9480 3.0242 8 6 4.6841 -1.6929 2.2050 9 6 4.2961 -0.1996 4.1489 10 1 4.2847 0.8802 4.1607 11 6 4.9216 -0.8936 5.1629 12 7 5.8343 -0.2997 5.9004 13 14 4.4728 -2.6772 5.4891 14 1 5.2820 -3.1919 6.6230 15 1 4.7500 -3.4873 4.2758 16 1 3.0298 -2.7706 5.8276 17 8 2.6879 -1.8852 3.5622 18 6 2.1462 -2.7632 2.5724 19 6 1.6597 -1.9651 1.3948 20 8 0.9155 -2.4945 0.5967 21 1 -0.3633 0.5664 0.8575 22 1 -0.3633 0.4594 -0.9193 23 1 -0.3634 -1.0258 0.0618 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9564 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 1.6766 -1.7488 -1.2494 28 1 1.6767 -0.2073 -2.1393 29 1 3.1300 -0.7216 -1.2491 30 1 2.2669 0.6968 2.7427 31 1 3.5965 0.6341 1.5635 32 1 5.2561 -2.3495 2.8608 33 1 4.1934 -2.2870 1.4342 34 1 5.3552 -0.9729 1.7367 35 1 6.1205 0.6018 5.6852 36 1 2.9180 -3.4594 2.2442 37 1 1.3131 -3.3210 2.9999 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -92.902261 kcal Electronic energy + Delta-G solvation = -19269.401555 eV Core-core repulsion = 16432.433090 eV Total energy + Delta-G solvation = -2836.968465 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12804 -39.23613 -37.84328 -35.12425 -33.94992 -32.20328 -29.24633 -28.83338 -28.22795 -26.78286 -26.32435 -23.23729 -21.21895 -19.88116 -19.01847 -18.09508 -17.61866 -16.93678 -16.41182 -16.11057 -15.64647 -15.25780 -15.16019 -14.73337 -14.49461 -14.23671 -14.03863 -13.30988 -13.17345 -13.05902 -13.03175 -12.82460 -12.71069 -12.50571 -12.33016 -12.17337 -12.07478 -11.96367 -11.53548 -11.16474 -10.86557 -10.52565 -10.00142 -9.64334 -8.78527 -6.50763 1.47054 1.53335 1.61031 1.88162 1.92175 2.52037 2.85110 3.35965 3.41942 3.88950 3.93956 3.99950 4.10445 4.21154 4.28918 4.36806 4.48737 4.56520 4.62159 4.66344 4.72607 4.76512 4.82428 4.89869 4.95522 4.98272 5.14599 5.24891 5.35171 5.39343 5.64365 5.77842 5.99374 6.24271 6.45119 6.59399 7.07590 7.28019 8.58129 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.009276 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.951896 B = 3017.865253 C = 3432.195336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 C -0.150 4.150 4 C -0.153 4.153 5 N -0.590 5.590 6 C 0.114 3.886 7 C 0.192 3.808 8 C -0.164 4.164 9 C -0.595 4.595 10 H 0.048 0.952 11 C 0.009 3.991 12 N -0.919 5.919 13 Si 1.103 2.897 14 H -0.316 1.316 15 H -0.258 1.258 16 H -0.274 1.274 17 O -0.386 6.386 18 C 0.028 3.972 19 C 0.492 3.508 20 O -0.570 6.570 21 H 0.046 0.954 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -0.075 -12.552 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 C -0.207 4.207 4 C -0.211 4.211 5 N -0.322 5.322 6 C -0.009 4.009 7 C 0.154 3.846 8 C -0.221 4.221 9 C -0.632 4.632 10 H 0.066 0.934 11 C -0.194 4.194 12 N -0.553 5.553 13 Si 0.931 3.069 14 H -0.246 1.246 15 H -0.183 1.183 16 H -0.200 1.200 17 O -0.307 6.307 18 C -0.051 4.051 19 C 0.281 3.719 20 O -0.452 6.452 21 H 0.066 0.934 22 H 0.103 0.897 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.942 -1.545 -11.769 13.751 hybrid contribution 0.007 1.671 -0.731 1.823 sum -6.935 0.125 -12.500 14.295 Atomic orbital electron populations 1.22176 0.94002 1.02925 1.02379 1.20755 0.94825 0.93154 0.84431 1.22134 1.01707 0.93170 1.03692 1.22124 1.00727 1.01518 0.96742 1.47901 1.48772 1.11642 1.23910 1.22037 0.93034 0.95301 0.90533 1.19979 0.85457 0.86367 0.92772 1.22513 0.99776 1.00627 0.99219 1.21743 1.36855 0.93201 1.11382 0.93392 1.26911 0.91159 1.08970 0.92346 1.70991 1.26536 1.15608 1.42145 0.83229 0.76122 0.71750 0.75831 1.24610 1.18337 1.19976 1.88291 1.60211 1.48283 1.33880 1.22908 1.00575 0.93369 0.88294 1.21052 0.80441 0.82654 0.87762 1.90569 1.37546 1.69903 1.47152 0.93438 0.89687 0.92144 0.91791 0.88674 0.92330 0.92663 0.89510 0.92950 0.92542 0.89128 0.92988 0.93360 0.91648 0.92894 0.88997 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 8.40 71.98 0.60 -3.54 16 2 C 0.15 4.13 1.03 3.60 0.00 4.13 16 3 C -0.15 -3.34 7.35 71.98 0.53 -2.81 16 4 C -0.15 -3.88 8.39 71.98 0.60 -3.28 16 5 N -0.59 -19.81 2.72 -777.57 -2.12 -21.93 16 6 C 0.11 4.17 4.15 86.46 0.36 4.53 16 7 C 0.19 8.31 0.65 -11.53 -0.01 8.30 16 8 C -0.16 -6.46 7.76 71.98 0.56 -5.90 16 9 C -0.59 -31.20 8.61 25.60 0.22 -30.98 16 10 H 0.05 2.68 8.00 -2.91 -0.02 2.66 16 11 C 0.01 0.51 5.27 84.66 0.45 0.95 16 12 N -0.92 -54.60 13.69 21.45 0.29 -54.31 16 13 Si 1.10 52.22 24.75 68.60 1.70 53.91 16 14 H -0.32 -15.36 7.11 99.48 0.71 -14.65 16 15 H -0.26 -10.91 5.94 99.48 0.59 -10.32 16 16 H -0.27 -12.67 6.96 99.48 0.69 -11.97 16 17 O -0.39 -16.71 6.56 -148.98 -0.98 -17.69 16 18 C 0.03 0.98 6.32 71.12 0.45 1.43 16 19 C 0.49 17.75 6.24 87.69 0.55 18.30 16 20 O -0.57 -21.59 12.75 -3.05 -0.04 -21.63 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.90 5.77 -2.39 -0.01 1.89 16 24 H 0.06 1.45 6.77 -2.39 -0.02 1.43 16 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.37 7.69 -2.39 -0.02 1.36 16 27 H 0.05 1.66 6.17 -2.39 -0.01 1.65 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 2.19 8.00 -2.39 -0.02 2.17 16 31 H 0.09 3.06 6.15 -2.38 -0.01 3.04 16 32 H 0.05 2.18 5.26 -2.38 -0.01 2.16 16 33 H 0.05 1.70 5.80 -2.39 -0.01 1.68 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.26 15.43 8.73 -92.70 -0.81 14.62 16 36 H 0.09 3.05 6.82 -2.38 -0.02 3.03 16 37 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 Total: -1.00 -61.70 276.80 4.06 -57.64 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.88 Total: 12.85 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.31 Total: -8.85 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.82 Total: -76.24 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.02 Total: -39.32 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 1.70 Total: 53.91 kcal Total: -61.70 4.06 -57.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.264 kcal (2) G-P(sol) polarization free energy of solvation -61.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds