Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47190 * 239.99662 * 2 1 3 5 5 N 1.46499 * 109.47315 * 119.99700 * 2 1 3 6 6 C 1.46096 * 118.73074 * 0.31998 * 5 2 1 7 7 C 1.53019 * 109.92658 * 161.66293 * 6 5 2 8 8 C 1.53005 * 109.60264 * 289.24295 * 7 6 5 9 9 C 1.50692 * 109.60489 * 168.92293 * 7 6 5 10 10 H 1.08005 * 120.00243 * 115.89924 * 9 7 6 11 11 C 1.37884 * 120.00113 * 295.90049 * 9 7 6 12 12 N 1.31509 * 119.99607 * 355.77044 * 11 9 7 13 13 Si 1.86798 * 120.00219 * 175.77327 * 11 9 7 14 14 H 1.48500 * 109.47033 * 269.99520 * 13 11 9 15 15 H 1.48493 * 109.47170 * 29.99659 * 13 11 9 16 16 H 1.48498 * 109.46913 * 149.99894 * 13 11 9 17 17 O 1.43244 * 108.80488 * 49.08064 * 7 6 5 18 18 C 1.42924 * 113.00513 * 291.88593 * 17 7 6 19 19 C 1.33866 * 118.73230 * 180.34209 * 5 2 1 20 20 O 1.21289 * 118.83192 * 1.86707 * 19 5 2 21 21 H 1.08998 * 109.46871 * 299.99894 * 1 2 3 22 22 H 1.08989 * 109.47050 * 60.00166 * 1 2 3 23 23 H 1.08996 * 109.46715 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47169 * 186.80247 * 3 2 1 25 25 H 1.09003 * 109.47159 * 306.79342 * 3 2 1 26 26 H 1.08997 * 109.47700 * 66.80341 * 3 2 1 27 27 H 1.08993 * 109.47074 * 300.00177 * 4 2 1 28 28 H 1.09003 * 109.46812 * 59.99956 * 4 2 1 29 29 H 1.09000 * 109.47049 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.38943 * 41.52401 * 6 5 2 31 31 H 1.09001 * 109.40011 * 281.80674 * 6 5 2 32 32 H 1.08991 * 109.47315 * 293.88578 * 8 7 6 33 33 H 1.09008 * 109.46875 * 53.88289 * 8 7 6 34 34 H 1.08994 * 109.47124 * 173.87999 * 8 7 6 35 35 H 0.97011 * 120.00496 * 0.05937 * 12 11 9 36 36 H 1.09004 * 109.28007 * 289.26739 * 18 17 7 37 37 H 1.09003 * 109.38433 * 169.50541 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 1.0448 -1.2413 2.1359 7 6 1.7176 -2.2812 3.0344 8 6 2.0434 -3.5325 2.2163 9 6 0.7929 -2.6447 4.1673 10 1 0.4115 -3.6516 4.2514 11 6 0.4335 -1.6916 5.0967 12 7 0.9622 -0.4887 5.0431 13 14 -0.8043 -2.1091 6.4320 14 1 -2.1746 -1.7988 5.9512 15 1 -0.7102 -3.5544 6.7598 16 1 -0.5121 -1.3060 7.6464 17 8 2.9270 -1.7230 3.5612 18 6 3.9293 -1.5189 2.5629 19 6 3.3396 -0.7922 1.3862 20 8 4.0876 -0.2799 0.5804 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 3.1232 1.4450 -0.1217 25 1 1.5808 1.9902 -0.8230 26 1 1.7795 1.9200 0.9445 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7209 -1.2494 30 1 0.2333 -1.7126 1.5814 31 1 0.6413 -0.4375 2.7518 32 1 1.1168 -4.0098 1.8978 33 1 2.6274 -3.2516 1.3397 34 1 2.6183 -4.2273 2.8284 35 1 1.6044 -0.2716 4.3491 36 1 4.3139 -2.4851 2.2363 37 1 4.7433 -0.9281 2.9829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = -79.137185 kcal Electronic energy + Delta-G solvation = -19387.070672 eV Core-core repulsion = 16550.699106 eV Total energy + Delta-G solvation = -2836.371566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47001 -37.42930 -36.32505 -33.19143 -32.10611 -30.22147 -27.68590 -27.21840 -26.97097 -24.90150 -24.54172 -21.71137 -19.81763 -17.58369 -17.32833 -16.44055 -15.97821 -15.07474 -14.76642 -14.14961 -13.97734 -13.79724 -13.48233 -13.28980 -12.99807 -12.31855 -12.00111 -11.90302 -11.71162 -11.56326 -11.34607 -11.27143 -11.12239 -10.97321 -10.84069 -10.78184 -10.65213 -10.36138 -10.17012 -9.35364 -8.73759 -8.63855 -8.28098 -8.01099 -6.44885 -4.33465 3.13144 3.35004 3.38693 3.51297 3.56077 4.39349 4.83378 4.93552 5.21148 5.28880 5.34719 5.45816 5.70823 5.75273 5.83294 5.84728 5.92297 5.95646 6.03232 6.09673 6.12092 6.16971 6.21503 6.28366 6.36882 6.43130 6.57331 6.66200 6.69257 7.07279 7.16144 7.73349 8.07572 8.19170 8.38044 8.68972 8.76294 9.49616 10.90425 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.009277 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.438586 B = 3017.552773 C = 3323.422457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 C -0.159 4.159 4 C -0.159 4.159 5 N -0.589 5.589 6 C 0.086 3.914 7 C 0.208 3.792 8 C -0.159 4.159 9 C -0.597 4.597 10 H 0.065 0.935 11 C 0.036 3.964 12 N -0.882 5.882 13 Si 1.071 2.929 14 H -0.286 1.286 15 H -0.287 1.287 16 H -0.283 1.283 17 O -0.359 6.359 18 C 0.039 3.961 19 C 0.493 3.507 20 O -0.567 6.567 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.288 0.712 36 H 0.071 0.929 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -0.671 -7.966 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.077 3.923 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.321 5.321 6 C -0.036 4.036 7 C 0.170 3.830 8 C -0.217 4.217 9 C -0.634 4.634 10 H 0.083 0.917 11 C -0.174 4.174 12 N -0.517 5.517 13 Si 0.898 3.102 14 H -0.212 1.212 15 H -0.213 1.213 16 H -0.208 1.208 17 O -0.278 6.278 18 C -0.042 4.042 19 C 0.282 3.718 20 O -0.449 6.449 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.375 0.258 -6.868 7.009 hybrid contribution 0.725 -0.735 -1.600 1.903 sum -0.650 -0.477 -8.468 8.506 Atomic orbital electron populations 1.22132 0.93893 1.02537 1.02469 1.20400 0.93785 0.92603 0.85552 1.22201 1.03562 0.94642 1.01308 1.22181 1.03594 0.99660 0.96213 1.48031 1.06142 1.55045 1.22916 1.22722 0.91976 0.98846 0.90055 1.19730 0.82959 0.87275 0.93004 1.22296 1.00976 0.99710 0.98689 1.21717 1.29235 0.99585 1.12843 0.91711 1.25898 0.98719 0.93367 0.99409 1.70654 1.26673 1.20698 1.33651 0.83522 0.75269 0.75430 0.75948 1.21244 1.21271 1.20846 1.88649 1.24253 1.83350 1.31557 1.22551 0.93870 0.99003 0.88740 1.21135 0.82351 0.80415 0.87943 1.90545 1.58932 1.48880 1.46518 0.91610 0.91718 0.91829 0.90270 0.92655 0.92769 0.93120 0.92419 0.90440 0.91225 0.90135 0.92405 0.94921 0.92606 0.89737 0.91127 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.34 37.16 0.27 -2.00 16 2 C 0.16 2.74 1.03 -131.82 -0.14 2.60 16 3 C -0.16 -2.65 8.25 37.16 0.31 -2.34 16 4 C -0.16 -2.48 8.38 37.16 0.31 -2.16 16 5 N -0.59 -11.76 2.64 -159.54 -0.42 -12.18 16 6 C 0.09 1.86 3.82 -4.25 -0.02 1.85 16 7 C 0.21 4.87 0.68 -91.76 -0.06 4.80 16 8 C -0.16 -3.23 7.70 37.16 0.29 -2.94 16 9 C -0.60 -15.46 8.24 -34.44 -0.28 -15.74 16 10 H 0.06 1.66 7.75 -52.48 -0.41 1.25 16 11 C 0.04 0.97 5.14 -17.82 -0.09 0.88 16 12 N -0.88 -25.01 12.75 55.43 0.71 -24.30 16 13 Si 1.07 23.49 29.91 -169.99 -5.08 18.40 16 14 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 15 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 O -0.36 -8.78 8.47 -35.23 -0.30 -9.08 16 18 C 0.04 0.79 6.33 35.83 0.23 1.02 16 19 C 0.49 10.34 6.19 -11.56 -0.07 10.27 16 20 O -0.57 -12.31 12.85 5.55 0.07 -12.24 16 21 H 0.06 1.04 7.67 -51.93 -0.40 0.65 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.93 6.80 -51.93 -0.35 0.58 16 24 H 0.08 1.46 6.14 -51.93 -0.32 1.14 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.36 6.10 -51.93 -0.32 1.05 16 30 H 0.07 1.40 6.13 -51.93 -0.32 1.09 16 31 H 0.08 1.96 5.88 -51.93 -0.31 1.66 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.03 0.62 6.19 -51.92 -0.32 0.30 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.29 8.26 4.90 -40.82 -0.20 8.06 16 36 H 0.07 1.33 7.03 -51.93 -0.37 0.97 16 37 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -28.87 280.79 -5.53 -34.41 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.48 Total: 4.54 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.74 Total: -3.77 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.28 Total: -36.48 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.23 Total: -21.32 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.40 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.87 -5.53 -34.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.730 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds