Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47190 * 239.99662 * 2 1 3 5 5 N 1.46499 * 109.47315 * 119.99700 * 2 1 3 6 6 C 1.46096 * 118.73074 * 0.31998 * 5 2 1 7 7 C 1.53019 * 109.92658 * 161.66293 * 6 5 2 8 8 C 1.53005 * 109.60264 * 289.24295 * 7 6 5 9 9 C 1.50692 * 109.60489 * 168.92293 * 7 6 5 10 10 H 1.08005 * 120.00243 * 115.89924 * 9 7 6 11 11 C 1.37884 * 120.00113 * 295.90049 * 9 7 6 12 12 N 1.31509 * 119.99607 * 355.77044 * 11 9 7 13 13 Si 1.86798 * 120.00219 * 175.77327 * 11 9 7 14 14 H 1.48500 * 109.47033 * 269.99520 * 13 11 9 15 15 H 1.48493 * 109.47170 * 29.99659 * 13 11 9 16 16 H 1.48498 * 109.46913 * 149.99894 * 13 11 9 17 17 O 1.43244 * 108.80488 * 49.08064 * 7 6 5 18 18 C 1.42924 * 113.00513 * 291.88593 * 17 7 6 19 19 C 1.33866 * 118.73230 * 180.34209 * 5 2 1 20 20 O 1.21289 * 118.83192 * 1.86707 * 19 5 2 21 21 H 1.08998 * 109.46871 * 299.99894 * 1 2 3 22 22 H 1.08989 * 109.47050 * 60.00166 * 1 2 3 23 23 H 1.08996 * 109.46715 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47169 * 186.80247 * 3 2 1 25 25 H 1.09003 * 109.47159 * 306.79342 * 3 2 1 26 26 H 1.08997 * 109.47700 * 66.80341 * 3 2 1 27 27 H 1.08993 * 109.47074 * 300.00177 * 4 2 1 28 28 H 1.09003 * 109.46812 * 59.99956 * 4 2 1 29 29 H 1.09000 * 109.47049 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.38943 * 41.52401 * 6 5 2 31 31 H 1.09001 * 109.40011 * 281.80674 * 6 5 2 32 32 H 1.08991 * 109.47315 * 293.88578 * 8 7 6 33 33 H 1.09008 * 109.46875 * 53.88289 * 8 7 6 34 34 H 1.08994 * 109.47124 * 173.87999 * 8 7 6 35 35 H 0.97011 * 120.00496 * 0.05937 * 12 11 9 36 36 H 1.09004 * 109.28007 * 289.26739 * 18 17 7 37 37 H 1.09003 * 109.38433 * 169.50541 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 1.0448 -1.2413 2.1359 7 6 1.7176 -2.2812 3.0344 8 6 2.0434 -3.5325 2.2163 9 6 0.7929 -2.6447 4.1673 10 1 0.4115 -3.6516 4.2514 11 6 0.4335 -1.6916 5.0967 12 7 0.9622 -0.4887 5.0431 13 14 -0.8043 -2.1091 6.4320 14 1 -2.1746 -1.7988 5.9512 15 1 -0.7102 -3.5544 6.7598 16 1 -0.5121 -1.3060 7.6464 17 8 2.9270 -1.7230 3.5612 18 6 3.9293 -1.5189 2.5629 19 6 3.3396 -0.7922 1.3862 20 8 4.0876 -0.2799 0.5804 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 3.1232 1.4450 -0.1217 25 1 1.5808 1.9902 -0.8230 26 1 1.7795 1.9200 0.9445 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7209 -1.2494 30 1 0.2333 -1.7126 1.5814 31 1 0.6413 -0.4375 2.7518 32 1 1.1168 -4.0098 1.8978 33 1 2.6274 -3.2516 1.3397 34 1 2.6183 -4.2273 2.8284 35 1 1.6044 -0.2716 4.3491 36 1 4.3139 -2.4851 2.2363 37 1 4.7433 -0.9281 2.9829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = -96.967692 kcal Electronic energy + Delta-G solvation = -19387.843861 eV Core-core repulsion = 16550.699106 eV Total energy + Delta-G solvation = -2837.144755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.09024 -39.15160 -37.84118 -35.08747 -33.72579 -31.97574 -29.13729 -28.76151 -28.26437 -26.58926 -26.38470 -23.35110 -21.41449 -19.41568 -18.98924 -18.12816 -17.52835 -16.70147 -16.43881 -15.73719 -15.66969 -15.47704 -15.00416 -14.86236 -14.53077 -13.88896 -13.42270 -13.34701 -13.07825 -13.04670 -12.99740 -12.84382 -12.69334 -12.62245 -12.51401 -12.14460 -12.13246 -11.95303 -11.89291 -11.03131 -10.60159 -10.59161 -9.99570 -9.63018 -8.50270 -6.40026 1.48332 1.60106 1.65947 1.84724 1.95536 2.59153 3.03208 3.36565 3.56546 3.90619 3.91822 4.04907 4.10677 4.21703 4.32885 4.41805 4.46641 4.55751 4.60969 4.62469 4.71382 4.77036 4.78582 4.87238 4.93465 5.00269 5.11024 5.23659 5.33335 5.38526 5.65414 5.90239 6.13574 6.39690 6.58772 6.68291 7.09425 7.51544 8.83716 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.009277 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.438586 B = 3017.552773 C = 3323.422457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.148 3.852 3 C -0.153 4.153 4 C -0.150 4.150 5 N -0.588 5.588 6 C 0.103 3.897 7 C 0.193 3.807 8 C -0.149 4.149 9 C -0.609 4.609 10 H 0.064 0.936 11 C -0.007 4.007 12 N -0.913 5.913 13 Si 1.113 2.887 14 H -0.269 1.269 15 H -0.272 1.272 16 H -0.291 1.291 17 O -0.388 6.388 18 C 0.035 3.965 19 C 0.487 3.513 20 O -0.577 6.577 21 H 0.048 0.952 22 H 0.097 0.903 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.276 0.724 36 H 0.090 0.910 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -1.295 -9.306 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.064 3.936 3 C -0.211 4.211 4 C -0.207 4.207 5 N -0.320 5.320 6 C -0.020 4.020 7 C 0.156 3.844 8 C -0.206 4.206 9 C -0.646 4.646 10 H 0.082 0.918 11 C -0.211 4.211 12 N -0.549 5.549 13 Si 0.936 3.064 14 H -0.194 1.194 15 H -0.196 1.196 16 H -0.217 1.217 17 O -0.308 6.308 18 C -0.045 4.045 19 C 0.276 3.724 20 O -0.459 6.459 21 H 0.068 0.932 22 H 0.116 0.884 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.339 -0.377 -8.237 8.570 hybrid contribution 1.086 -0.536 -1.234 1.729 sum -1.253 -0.913 -9.471 9.597 Atomic orbital electron populations 1.22105 0.92039 1.02979 1.03330 1.20780 0.95327 0.92557 0.84888 1.22140 1.02440 0.94856 1.01648 1.22096 1.02062 1.00091 0.96498 1.48045 1.05564 1.54900 1.23494 1.22333 0.92214 0.97483 0.89983 1.19870 0.82569 0.88969 0.93003 1.22170 1.01703 0.98263 0.98492 1.22052 1.29576 0.99424 1.13526 0.91793 1.27136 0.99761 0.92922 1.01330 1.70756 1.27931 1.21967 1.34261 0.82977 0.74203 0.75856 0.73394 1.19439 1.19647 1.21711 1.88560 1.25214 1.83742 1.33254 1.22730 0.93287 1.00259 0.88210 1.21175 0.82788 0.80538 0.87900 1.90547 1.59154 1.49362 1.46858 0.93238 0.88385 0.91570 0.92285 0.89301 0.94634 0.92792 0.89348 0.92660 0.89757 0.93228 0.91234 0.93883 0.92689 0.91079 0.89209 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 7.34 71.98 0.53 -3.49 16 2 C 0.15 4.76 1.03 3.60 0.00 4.76 16 3 C -0.15 -4.89 8.25 71.98 0.59 -4.29 16 4 C -0.15 -4.27 8.38 71.98 0.60 -3.67 16 5 N -0.59 -23.07 2.64 -777.56 -2.06 -25.13 16 6 C 0.10 4.41 3.82 86.46 0.33 4.74 16 7 C 0.19 8.99 0.68 -11.53 -0.01 8.98 16 8 C -0.15 -5.82 7.70 71.98 0.55 -5.26 16 9 C -0.61 -31.42 8.24 25.60 0.21 -31.21 16 10 H 0.06 3.22 7.75 -2.91 -0.02 3.20 16 11 C -0.01 -0.39 5.14 84.66 0.44 0.05 16 12 N -0.91 -52.80 12.75 21.45 0.27 -52.52 16 13 Si 1.11 47.02 29.91 68.60 2.05 49.07 16 14 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 17 O -0.39 -19.13 8.47 -148.98 -1.26 -20.39 16 18 C 0.03 1.42 6.33 71.12 0.45 1.87 16 19 C 0.49 20.23 6.19 87.69 0.54 20.77 16 20 O -0.58 -24.74 12.85 -3.06 -0.04 -24.78 16 21 H 0.05 1.51 7.67 -2.39 -0.02 1.49 16 22 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.07 1.76 6.80 -2.39 -0.02 1.75 16 24 H 0.06 2.12 6.14 -2.39 -0.01 2.11 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.84 6.10 -2.39 -0.01 1.83 16 30 H 0.08 3.31 6.13 -2.39 -0.01 3.30 16 31 H 0.05 2.46 5.88 -2.39 -0.01 2.45 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.04 1.56 6.19 -2.38 -0.01 1.55 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.28 16.31 4.90 -92.70 -0.45 15.86 16 36 H 0.09 3.28 7.03 -2.38 -0.02 3.27 16 37 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 Total: -1.00 -62.12 280.79 4.58 -57.54 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 1.36 Total: 22.95 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.25 Total: -6.74 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.78 Total: -77.65 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.30 Total: -45.17 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.05 Total: 49.07 kcal Total: -62.12 4.58 -57.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.423 kcal (2) G-P(sol) polarization free energy of solvation -62.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds