Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 112.99791 * 2 1 4 4 N 1.46904 * 109.46857 * 48.17739 * 3 2 1 5 5 C 1.47013 * 111.00052 * 66.36437 * 4 3 2 6 6 C 1.53104 * 109.25652 * 182.39399 * 5 4 3 7 7 O 1.43021 * 109.25567 * 303.14775 * 6 5 4 8 8 C 1.43010 * 113.73874 * 58.67196 * 7 6 5 9 9 H 1.08999 * 109.54146 * 61.28153 * 8 7 6 10 10 C 1.50697 * 109.50930 * 181.39531 * 8 7 6 11 11 H 1.07991 * 120.00449 * 119.50660 * 10 8 7 12 12 C 1.37885 * 119.99686 * 299.78492 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 8 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.47021 * 110.99888 * 189.99707 * 4 3 2 19 19 C 1.54033 * 113.92834 * 131.93624 * 2 1 3 20 20 O 1.44176 * 85.51607 * 91.65897 * 19 2 1 21 21 C 1.44173 * 93.34165 * 24.19385 * 20 19 2 22 22 H 1.08998 * 109.47199 * 59.99921 * 1 2 3 23 23 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46884 * 299.99527 * 1 2 3 25 25 H 1.08999 * 109.47539 * 288.17897 * 3 2 1 26 26 H 1.09002 * 109.47277 * 168.17348 * 3 2 1 27 27 H 1.08996 * 109.50534 * 302.32529 * 5 4 3 28 28 H 1.08996 * 109.51046 * 62.45755 * 5 4 3 29 29 H 1.08994 * 109.50661 * 63.08038 * 6 5 4 30 30 H 1.09000 * 109.50239 * 183.17233 * 6 5 4 31 31 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.50696 * 57.67311 * 18 4 3 33 33 H 1.08995 * 109.50430 * 297.54676 * 18 4 3 34 34 H 1.08999 * 113.86337 * 205.80976 * 19 2 1 35 35 H 1.09002 * 113.85979 * 337.51410 * 19 2 1 36 36 H 1.09003 * 113.86572 * 221.65816 * 21 20 19 37 37 H 1.09005 * 113.86416 * 89.95109 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 7 1.4689 2.2199 1.0322 5 6 1.7799 1.7151 2.3774 6 6 1.0273 2.5505 3.4166 7 8 1.3803 3.9276 3.2601 8 6 1.0905 4.4522 1.9616 9 1 0.0188 4.3887 1.7736 10 6 1.5294 5.8921 1.8912 11 1 2.2745 6.1949 1.1705 12 6 0.9839 6.8219 2.7508 13 7 0.0765 6.4532 3.6285 14 14 1.5335 8.6053 2.6686 15 1 2.5570 8.7593 1.6039 16 1 0.3656 9.4696 2.3620 17 1 2.1152 9.0047 3.9753 18 6 1.8436 3.6361 0.9077 19 6 2.1548 -0.9409 1.0474 20 8 2.1471 -1.9296 -0.0020 21 6 2.1520 -0.9396 -1.0502 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.9747 1.8682 -0.9763 26 1 3.1957 1.3499 0.2106 27 1 1.4709 0.6728 2.4554 28 1 2.8523 1.7919 2.5561 29 1 -0.0463 2.4312 3.2713 30 1 1.2986 2.2161 4.4180 31 1 -0.3075 7.1074 4.2330 32 1 1.5812 3.9960 -0.0872 33 1 2.9171 3.7435 1.0628 34 1 3.1539 -0.6442 1.3665 35 1 1.4917 -1.1763 1.8799 36 1 1.4868 -1.1740 -1.8813 37 1 3.1504 -0.6426 -1.3715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -72.236883 kcal Electronic energy + Delta-G solvation = -18340.348975 eV Core-core repulsion = 15504.276628 eV Total energy + Delta-G solvation = -2836.072347 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82291 -39.93676 -36.61665 -34.78587 -33.02244 -31.90829 -29.18329 -27.72110 -27.48669 -26.54699 -24.72110 -23.57674 -21.06237 -19.77670 -18.78223 -17.41301 -17.15613 -16.94895 -16.55847 -16.51218 -16.11401 -15.67706 -15.39272 -14.95545 -14.57449 -14.37028 -14.03752 -13.37321 -13.21283 -12.89975 -12.85807 -12.74717 -12.60709 -12.45663 -12.27099 -11.92344 -11.57075 -11.52674 -11.27876 -10.94825 -10.66432 -10.53664 -9.95294 -9.23137 -8.17003 -6.38170 1.41834 1.42979 1.55589 2.39716 2.73546 2.86494 3.03989 3.31808 3.72359 3.81759 4.03214 4.15846 4.21389 4.29856 4.38159 4.41417 4.49125 4.52600 4.60369 4.66857 4.74970 4.85830 4.91982 4.95606 5.00686 5.01788 5.06827 5.19168 5.22651 5.38371 5.46779 5.71174 5.96566 6.17200 6.22807 6.64409 7.12840 7.38700 8.92154 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051933 B = 0.005547 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.028299 B = 5046.644985 C = 5262.183848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.063 3.937 4 N -0.538 5.538 5 C 0.030 3.970 6 C 0.050 3.950 7 O -0.398 6.398 8 C 0.223 3.777 9 H -0.015 1.015 10 C -0.554 4.554 11 H 0.067 0.933 12 C 0.024 3.976 13 N -0.900 5.900 14 Si 0.966 3.034 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.281 1.281 18 C 0.048 3.952 19 C 0.038 3.962 20 O -0.402 6.402 21 C 0.047 3.953 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.022 0.978 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -12.718 -7.177 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.065 4.065 4 N -0.262 5.262 5 C -0.098 4.098 6 C -0.028 4.028 7 O -0.317 6.317 8 C 0.167 3.833 9 H 0.003 0.997 10 C -0.591 4.591 11 H 0.085 0.915 12 C -0.178 4.178 13 N -0.537 5.537 14 Si 0.790 3.210 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.206 1.206 18 C -0.080 4.080 19 C -0.039 4.039 20 O -0.321 6.321 21 C -0.030 4.030 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.120 0.880 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.953 -12.878 -6.974 14.940 hybrid contribution 0.798 1.123 0.268 1.404 sum 3.751 -11.755 -6.706 14.044 Atomic orbital electron populations 1.21338 0.91458 1.01257 1.02814 1.23636 0.98213 0.93706 0.96309 1.22222 0.95475 0.92992 0.95792 1.62236 1.58518 1.02088 1.03384 1.22810 0.97946 0.99967 0.89113 1.22608 0.97574 0.84018 0.98600 1.88300 1.83998 1.23351 1.36051 1.19560 0.92601 0.91449 0.79653 0.99739 1.21415 1.25386 0.92307 1.20003 0.91472 1.25963 0.94081 1.03692 0.94078 1.70190 1.27498 1.35714 1.20251 0.85403 0.78520 0.78838 0.78196 1.18484 1.19998 1.20636 1.22604 0.97142 0.87809 1.00400 1.24319 1.00694 0.86379 0.92473 1.89629 1.95860 1.28684 1.17959 1.24204 1.01297 0.85351 0.92157 0.91946 0.92119 0.92439 0.89871 0.94336 0.87964 0.95028 0.95096 0.88913 0.92845 0.90555 0.95999 0.89804 0.88610 0.87658 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 8.81 71.98 0.63 -1.93 16 2 C -0.12 -2.60 0.82 -51.48 -0.04 -2.64 16 3 C 0.06 1.63 4.57 86.30 0.39 2.03 16 4 N -0.54 -18.39 3.80 -895.19 -3.40 -21.79 16 5 C 0.03 0.98 5.03 86.32 0.43 1.41 16 6 C 0.05 2.03 7.01 72.02 0.50 2.54 16 7 O -0.40 -21.32 9.88 -148.98 -1.47 -22.79 16 8 C 0.22 11.87 2.66 29.88 0.08 11.95 16 9 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 10 C -0.55 -31.48 8.80 25.60 0.23 -31.26 16 11 H 0.07 3.65 7.74 -2.92 -0.02 3.63 16 12 C 0.02 1.39 5.40 84.66 0.46 1.85 16 13 N -0.90 -54.54 12.86 21.45 0.28 -54.26 16 14 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 C 0.05 2.03 4.87 86.31 0.42 2.45 16 19 C 0.04 0.81 6.29 72.27 0.45 1.27 16 20 O -0.40 -9.63 12.37 -148.98 -1.84 -11.47 16 21 C 0.05 0.88 8.36 72.27 0.60 1.49 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 24 H 0.06 1.55 7.51 -2.39 -0.02 1.53 16 25 H 0.08 2.05 8.04 -2.39 -0.02 2.04 16 26 H 0.04 0.97 7.91 -2.39 -0.02 0.95 16 27 H 0.10 2.73 5.08 -2.39 -0.01 2.71 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.08 3.06 8.09 -2.39 -0.02 3.04 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.71 7.96 -2.39 -0.02 1.69 16 35 H 0.10 1.96 7.36 -2.39 -0.02 1.94 16 36 H 0.11 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.09 1.48 8.10 -2.38 -0.02 1.46 16 Total: -1.00 -66.75 293.50 0.78 -65.96 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.03 Total: 9.31 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.17 Total: -10.85 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -3.12 Total: -76.05 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -3.31 Total: -34.26 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.75 0.78 -65.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.273 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds