Wall clock time and date at job start Mon Mar 30 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 113.00159 * 2 1 4 4 N 1.46895 * 109.47267 * 45.55437 * 3 2 1 5 5 C 1.47020 * 111.00144 * 177.40470 * 4 3 2 6 6 C 1.53097 * 109.25848 * 177.60545 * 5 4 3 7 7 O 1.43016 * 109.25670 * 56.84837 * 6 5 4 8 8 C 1.43018 * 113.73885 * 301.32791 * 7 6 5 9 9 H 1.09001 * 109.50129 * 298.69331 * 8 7 6 10 10 C 1.50702 * 109.50429 * 178.60903 * 8 7 6 11 11 H 1.08000 * 119.99348 * 239.72755 * 10 8 7 12 12 C 1.37879 * 120.00074 * 59.99440 * 10 8 7 13 13 N 1.31509 * 119.99994 * 359.73053 * 12 10 8 14 14 Si 1.86801 * 119.99632 * 179.72162 * 12 10 8 15 15 H 1.48503 * 109.46793 * 60.01083 * 14 12 10 16 16 H 1.48508 * 109.46762 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47331 * 300.00332 * 14 12 10 18 18 C 1.47010 * 111.00236 * 53.76732 * 4 3 2 19 19 C 1.54035 * 113.92252 * 131.92786 * 2 1 3 20 20 O 1.44176 * 85.51871 * 91.65830 * 19 2 1 21 21 C 1.44178 * 93.33892 * 24.19028 * 20 19 2 22 22 H 1.09002 * 109.46993 * 67.02147 * 1 2 3 23 23 H 1.08998 * 109.47815 * 187.02820 * 1 2 3 24 24 H 1.09000 * 109.47357 * 307.03275 * 1 2 3 25 25 H 1.09000 * 109.47066 * 285.55347 * 3 2 1 26 26 H 1.09003 * 109.47047 * 165.55578 * 3 2 1 27 27 H 1.09002 * 109.50045 * 57.66957 * 5 4 3 28 28 H 1.08999 * 109.50321 * 297.54582 * 5 4 3 29 29 H 1.08994 * 109.50435 * 296.91260 * 6 5 4 30 30 H 1.08997 * 109.50136 * 176.78564 * 6 5 4 31 31 H 0.97000 * 119.99887 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.50257 * 62.45882 * 18 4 3 33 33 H 1.08996 * 109.50792 * 302.32882 * 18 4 3 34 34 H 1.08993 * 113.86942 * 205.80413 * 19 2 1 35 35 H 1.09004 * 113.86918 * 337.51532 * 19 2 1 36 36 H 1.08994 * 113.86672 * 221.65696 * 21 20 19 37 37 H 1.09005 * 113.97959 * 89.96998 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.4265 2.2380 0.9887 5 6 2.0155 3.5832 1.0606 6 6 1.2192 4.4306 2.0564 7 8 1.2066 3.7764 3.3281 8 6 0.6389 2.4641 3.2949 9 1 -0.4007 2.5254 2.9729 10 6 0.7045 1.8526 4.6707 11 1 1.2481 0.9326 4.8272 12 6 0.0659 2.4646 5.7283 13 7 -0.5960 3.5849 5.5376 14 14 0.1407 1.7023 7.4321 15 1 1.5562 1.6113 7.8718 16 1 -0.6212 2.5475 8.3864 17 1 -0.4539 0.3422 7.3924 18 6 1.4293 1.5968 2.3116 19 6 2.1546 -0.9408 1.0475 20 8 2.1470 -1.9297 -0.0016 21 6 2.1519 -0.9399 -1.0500 22 1 -0.3633 0.4012 -0.9461 23 1 -0.3635 -1.0199 0.1257 24 1 -0.3634 0.6189 0.8204 25 1 2.0162 1.8504 -0.9900 26 1 3.1859 1.3539 0.2563 27 1 1.9798 4.0491 0.0758 28 1 3.0514 3.5096 1.3918 29 1 0.1968 4.5488 1.6977 30 1 1.6864 5.4103 2.1556 31 1 -1.0456 4.0152 6.2816 32 1 2.4558 1.4916 2.6628 33 1 0.9657 0.6129 2.2402 34 1 3.1537 -0.6443 1.3667 35 1 1.4916 -1.1762 1.8801 36 1 1.4868 -1.1743 -1.8810 37 1 3.1494 -0.6417 -1.3730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:33 Heat of formation + Delta-G solvation = -47.685278 kcal Electronic energy + Delta-G solvation = -18583.316933 eV Core-core repulsion = 15748.309224 eV Total energy + Delta-G solvation = -2835.007709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.77161 -38.30954 -35.05092 -32.79738 -31.66656 -30.10432 -27.63884 -26.62920 -26.16444 -25.13024 -22.95866 -21.94662 -19.36858 -18.71736 -16.78719 -16.12079 -15.95755 -15.68139 -14.95123 -14.78747 -14.61485 -14.19425 -13.67097 -13.50681 -13.15918 -12.92410 -12.23985 -12.15959 -11.87836 -11.76407 -11.33229 -11.01784 -10.92054 -10.84224 -10.61228 -10.42459 -10.25398 -9.94499 -9.70600 -9.45355 -8.97749 -8.56563 -8.16578 -7.69472 -6.03699 -4.17181 3.31431 3.35951 3.38090 3.77782 4.11947 4.37166 4.49832 4.89829 5.05806 5.16890 5.23237 5.34044 5.51144 5.54605 5.66666 5.67719 5.76105 5.91490 5.96088 5.99886 6.03229 6.10436 6.22094 6.25007 6.30095 6.32060 6.49991 6.59042 6.64529 6.74730 7.33595 7.54273 7.59890 7.88001 8.23816 8.72467 9.08111 9.53772 11.04245 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.007630 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.745185 B = 3668.748994 C = 4427.070933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.063 3.937 4 N -0.534 5.534 5 C 0.023 3.977 6 C 0.060 3.940 7 O -0.362 6.362 8 C 0.225 3.775 9 H 0.023 0.977 10 C -0.532 4.532 11 H 0.063 0.937 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.893 3.107 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.024 3.976 19 C 0.040 3.960 20 O -0.384 6.384 21 C 0.041 3.959 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.262 0.738 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -3.870 -11.539 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.121 4.121 3 C -0.066 4.066 4 N -0.258 5.258 5 C -0.105 4.105 6 C -0.019 4.019 7 O -0.280 6.280 8 C 0.169 3.831 9 H 0.040 0.960 10 C -0.570 4.570 11 H 0.081 0.919 12 C -0.126 4.126 13 N -0.494 5.494 14 Si 0.720 3.280 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.103 4.103 19 C -0.036 4.036 20 O -0.302 6.302 21 C -0.036 4.036 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.553 -3.874 -11.431 12.581 hybrid contribution 0.965 -0.259 0.831 1.300 sum 4.518 -4.133 -10.599 12.241 Atomic orbital electron populations 1.21527 0.91124 1.01850 1.03474 1.23656 0.98581 0.94632 0.95251 1.22130 0.95043 0.92489 0.96912 1.62346 1.52899 1.02250 1.08343 1.22772 0.97019 0.90702 0.99999 1.22333 0.98031 0.94853 0.86691 1.88424 1.82460 1.31760 1.25365 1.19752 0.91521 0.78852 0.92997 0.95978 1.20885 1.34641 1.08554 0.92915 0.91894 1.25035 0.94108 0.94413 0.99088 1.70031 1.31208 1.16557 1.31652 0.86665 0.78323 0.79224 0.83791 1.20078 1.21112 1.20009 1.23173 0.99852 0.99630 0.87636 1.24323 1.00452 0.86428 0.92441 1.89642 1.95718 1.27781 1.17093 1.24029 1.00025 0.87096 0.92486 0.92416 0.92742 0.89671 0.90967 0.95205 0.91456 0.95042 0.94059 0.90914 0.92829 0.95504 0.90323 0.90458 0.88458 0.89319 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 8.55 37.16 0.32 -1.41 16 2 C -0.12 -1.65 0.75 -153.43 -0.11 -1.76 16 3 C 0.06 0.90 4.74 -3.83 -0.02 0.88 16 4 N -0.53 -9.47 3.99 -234.31 -0.94 -10.40 16 5 C 0.02 0.41 5.66 -3.71 -0.02 0.39 16 6 C 0.06 1.22 7.01 37.21 0.26 1.48 16 7 O -0.36 -9.47 9.85 -35.23 -0.35 -9.82 16 8 C 0.22 5.77 2.66 -27.83 -0.07 5.69 16 9 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 10 C -0.53 -14.78 8.80 -34.44 -0.30 -15.09 16 11 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 12 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 13 N -0.86 -25.33 12.83 55.43 0.71 -24.62 16 14 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.02 0.50 3.37 -3.71 -0.01 0.49 16 19 C 0.04 0.58 6.56 37.61 0.25 0.83 16 20 O -0.38 -5.76 12.38 -35.23 -0.44 -6.20 16 21 C 0.04 0.49 8.36 37.61 0.31 0.81 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 24 H 0.08 1.41 6.01 -51.93 -0.31 1.10 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.43 7.88 -51.93 -0.41 0.02 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.54 3.99 -51.93 -0.21 1.34 16 34 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 35 H 0.10 1.48 7.15 -51.93 -0.37 1.11 16 36 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 290.20 15.07 4.37 4.37 Total: -1.00 -30.47 290.20 -7.05 -37.52 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.89 Total: -1.50 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.50 Total: -5.54 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.22 Total: -35.02 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.78 Total: -16.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.47 -7.05 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.162 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds