Wall clock time and date at job start Mon Mar 30 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 113.00159 * 2 1 4 4 N 1.46895 * 109.47267 * 45.55437 * 3 2 1 5 5 C 1.47020 * 111.00144 * 177.40470 * 4 3 2 6 6 C 1.53097 * 109.25848 * 177.60545 * 5 4 3 7 7 O 1.43016 * 109.25670 * 56.84837 * 6 5 4 8 8 C 1.43018 * 113.73885 * 301.32791 * 7 6 5 9 9 H 1.09001 * 109.50129 * 298.69331 * 8 7 6 10 10 C 1.50702 * 109.50429 * 178.60903 * 8 7 6 11 11 H 1.08000 * 119.99348 * 239.72755 * 10 8 7 12 12 C 1.37879 * 120.00074 * 59.99440 * 10 8 7 13 13 N 1.31509 * 119.99994 * 359.73053 * 12 10 8 14 14 Si 1.86801 * 119.99632 * 179.72162 * 12 10 8 15 15 H 1.48503 * 109.46793 * 60.01083 * 14 12 10 16 16 H 1.48508 * 109.46762 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47331 * 300.00332 * 14 12 10 18 18 C 1.47010 * 111.00236 * 53.76732 * 4 3 2 19 19 C 1.54035 * 113.92252 * 131.92786 * 2 1 3 20 20 O 1.44176 * 85.51871 * 91.65830 * 19 2 1 21 21 C 1.44178 * 93.33892 * 24.19028 * 20 19 2 22 22 H 1.09002 * 109.46993 * 67.02147 * 1 2 3 23 23 H 1.08998 * 109.47815 * 187.02820 * 1 2 3 24 24 H 1.09000 * 109.47357 * 307.03275 * 1 2 3 25 25 H 1.09000 * 109.47066 * 285.55347 * 3 2 1 26 26 H 1.09003 * 109.47047 * 165.55578 * 3 2 1 27 27 H 1.09002 * 109.50045 * 57.66957 * 5 4 3 28 28 H 1.08999 * 109.50321 * 297.54582 * 5 4 3 29 29 H 1.08994 * 109.50435 * 296.91260 * 6 5 4 30 30 H 1.08997 * 109.50136 * 176.78564 * 6 5 4 31 31 H 0.97000 * 119.99887 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.50257 * 62.45882 * 18 4 3 33 33 H 1.08996 * 109.50792 * 302.32882 * 18 4 3 34 34 H 1.08993 * 113.86942 * 205.80413 * 19 2 1 35 35 H 1.09004 * 113.86918 * 337.51532 * 19 2 1 36 36 H 1.08994 * 113.86672 * 221.65696 * 21 20 19 37 37 H 1.09005 * 113.97959 * 89.96998 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.4265 2.2380 0.9887 5 6 2.0155 3.5832 1.0606 6 6 1.2192 4.4306 2.0564 7 8 1.2066 3.7764 3.3281 8 6 0.6389 2.4641 3.2949 9 1 -0.4007 2.5254 2.9729 10 6 0.7045 1.8526 4.6707 11 1 1.2481 0.9326 4.8272 12 6 0.0659 2.4646 5.7283 13 7 -0.5960 3.5849 5.5376 14 14 0.1407 1.7023 7.4321 15 1 1.5562 1.6113 7.8718 16 1 -0.6212 2.5475 8.3864 17 1 -0.4539 0.3422 7.3924 18 6 1.4293 1.5968 2.3116 19 6 2.1546 -0.9408 1.0475 20 8 2.1470 -1.9297 -0.0016 21 6 2.1519 -0.9399 -1.0500 22 1 -0.3633 0.4012 -0.9461 23 1 -0.3635 -1.0199 0.1257 24 1 -0.3634 0.6189 0.8204 25 1 2.0162 1.8504 -0.9900 26 1 3.1859 1.3539 0.2563 27 1 1.9798 4.0491 0.0758 28 1 3.0514 3.5096 1.3918 29 1 0.1968 4.5488 1.6977 30 1 1.6864 5.4103 2.1556 31 1 -1.0456 4.0152 6.2816 32 1 2.4558 1.4916 2.6628 33 1 0.9657 0.6129 2.2402 34 1 3.1537 -0.6443 1.3667 35 1 1.4916 -1.1762 1.8801 36 1 1.4868 -1.1743 -1.8810 37 1 3.1494 -0.6417 -1.3730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:33 Heat of formation + Delta-G solvation = -69.955186 kcal Electronic energy + Delta-G solvation = -18584.282629 eV Core-core repulsion = 15748.309224 eV Total energy + Delta-G solvation = -2835.973405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89447 -39.91755 -36.63179 -34.82398 -32.98495 -31.89862 -29.05452 -27.89960 -27.44604 -26.71051 -24.39224 -23.73042 -21.02836 -19.81221 -18.74693 -17.49656 -17.08459 -16.87641 -16.60333 -16.51604 -16.21391 -15.73849 -15.30400 -15.01135 -14.53570 -14.40337 -13.88064 -13.47708 -13.17769 -12.86859 -12.85646 -12.71494 -12.61792 -12.50212 -12.26415 -11.94224 -11.65596 -11.46960 -11.17804 -10.96358 -10.65951 -10.54105 -9.94800 -9.21457 -8.16681 -6.37919 1.41228 1.44078 1.51636 2.39381 2.72761 2.90038 3.04521 3.28415 3.73959 3.78380 4.04288 4.17037 4.20496 4.31995 4.36627 4.46122 4.49209 4.53112 4.59226 4.67416 4.77178 4.89308 4.91834 4.93350 4.99888 5.00693 5.09196 5.16882 5.23174 5.36146 5.48771 5.71706 5.97754 6.19082 6.23785 6.63889 7.14077 7.38884 8.91974 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.007630 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.745185 B = 3668.748994 C = 4427.070933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.122 4.122 3 C 0.065 3.935 4 N -0.541 5.541 5 C 0.031 3.969 6 C 0.050 3.950 7 O -0.399 6.399 8 C 0.224 3.776 9 H -0.017 1.017 10 C -0.556 4.556 11 H 0.066 0.934 12 C 0.026 3.974 13 N -0.898 5.898 14 Si 0.962 3.038 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.047 3.953 19 C 0.034 3.966 20 O -0.404 6.404 21 C 0.051 3.949 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.037 0.963 27 H 0.106 0.894 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.017 0.983 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -4.500 -13.027 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.122 4.122 3 C -0.062 4.062 4 N -0.266 5.266 5 C -0.097 4.097 6 C -0.028 4.028 7 O -0.318 6.318 8 C 0.168 3.832 9 H 0.001 0.999 10 C -0.593 4.593 11 H 0.085 0.915 12 C -0.177 4.177 13 N -0.535 5.535 14 Si 0.786 3.214 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.081 4.081 19 C -0.042 4.042 20 O -0.323 6.323 21 C -0.026 4.026 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.118 0.882 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.749 -4.512 -12.944 14.507 hybrid contribution 0.580 -0.016 1.202 1.335 sum 5.329 -4.529 -11.742 13.666 Atomic orbital electron populations 1.21445 0.91703 1.01278 1.03079 1.23655 0.98111 0.94516 0.95952 1.22235 0.94956 0.92223 0.96820 1.62302 1.54226 1.02845 1.07203 1.22713 0.96019 0.90149 1.00836 1.22601 0.98454 0.96160 0.85536 1.88298 1.82411 1.32235 1.28901 1.19556 0.90322 0.79814 0.93503 0.99941 1.21351 1.34580 1.09004 0.94386 0.91544 1.25932 0.93607 0.94831 1.03327 1.70171 1.32355 1.18136 1.32829 0.85574 0.78513 0.78717 0.78590 1.19497 1.20657 1.18771 1.22734 0.98112 0.98902 0.88366 1.24316 1.00484 0.87010 0.92417 1.89626 1.95865 1.28829 1.18006 1.24224 1.01471 0.84986 0.91878 0.90682 0.92737 0.92803 0.88212 0.94470 0.87599 0.94982 0.95106 0.88851 0.92844 0.96523 0.89788 0.90056 0.90029 0.87308 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 8.55 71.98 0.62 -2.55 16 2 C -0.12 -3.05 0.75 -51.48 -0.04 -3.09 16 3 C 0.07 1.66 4.74 86.30 0.41 2.07 16 4 N -0.54 -18.43 3.99 -895.24 -3.58 -22.01 16 5 C 0.03 1.01 5.66 86.31 0.49 1.50 16 6 C 0.05 2.04 7.01 72.01 0.50 2.55 16 7 O -0.40 -21.46 9.85 -148.98 -1.47 -22.93 16 8 C 0.22 11.91 2.66 29.88 0.08 11.99 16 9 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 10 C -0.56 -31.73 8.80 25.60 0.23 -31.50 16 11 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 12 C 0.03 1.48 5.40 84.66 0.46 1.94 16 13 N -0.90 -54.63 12.83 21.45 0.28 -54.35 16 14 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 18 C 0.05 1.95 3.37 86.31 0.29 2.24 16 19 C 0.03 0.96 6.56 72.27 0.47 1.44 16 20 O -0.40 -11.33 12.38 -148.98 -1.84 -13.18 16 21 C 0.05 1.04 8.36 72.27 0.60 1.64 16 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.43 8.07 -2.39 -0.02 1.41 16 24 H 0.05 1.79 6.01 -2.39 -0.01 1.78 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 0.93 7.88 -2.39 -0.02 0.91 16 27 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 3.37 3.99 -2.39 -0.01 3.36 16 34 H 0.08 2.19 7.92 -2.39 -0.02 2.18 16 35 H 0.08 2.51 7.15 -2.38 -0.02 2.49 16 36 H 0.11 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.10 1.59 8.10 -2.38 -0.02 1.57 16 Total: -1.00 -67.62 290.20 0.56 -67.06 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.04 Total: 11.05 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.11 Total: -11.79 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -3.30 Total: -76.36 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -3.31 Total: -36.10 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.62 0.56 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.898 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds