Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48502 * 109.46934 * 269.99932 * 3 2 1 5 5 H 1.48496 * 109.47267 * 30.00228 * 3 2 1 6 6 H 1.48501 * 109.46972 * 150.00154 * 3 2 1 7 7 C 1.37876 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99695 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.50569 * 60.08319 * 9 7 2 11 11 C 1.53099 * 109.50354 * 299.99819 * 9 7 2 12 12 O 1.43013 * 109.25452 * 183.21631 * 11 9 7 13 13 C 1.43015 * 113.74057 * 58.66806 * 12 11 9 14 14 C 1.53093 * 109.25957 * 301.32835 * 13 12 11 15 15 N 1.47010 * 109.50551 * 180.21148 * 9 7 2 16 16 C 1.46901 * 111.00342 * 302.32743 * 15 9 7 17 17 C 1.52994 * 109.47072 * 170.00233 * 16 15 9 18 18 C 1.53003 * 109.47043 * 180.02562 * 17 16 15 19 19 C 1.54026 * 113.81556 * 273.50272 * 18 17 16 20 20 O 1.44446 * 85.42841 * 223.23557 * 19 18 17 21 21 C 1.44179 * 93.37704 * 24.09090 * 20 19 18 22 22 H 0.96996 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.50568 * 63.28028 * 11 9 7 24 24 H 1.09003 * 109.50449 * 303.14791 * 11 9 7 25 25 H 1.09007 * 109.50806 * 61.26305 * 13 12 11 26 26 H 1.09004 * 109.50893 * 181.39269 * 13 12 11 27 27 H 1.08997 * 109.51092 * 176.78238 * 14 13 12 28 28 H 1.08997 * 109.50753 * 296.91321 * 14 13 12 29 29 H 1.09000 * 109.46663 * 289.99727 * 16 15 9 30 30 H 1.09001 * 109.47076 * 49.99981 * 16 15 9 31 31 H 1.09007 * 109.47410 * 299.99830 * 17 16 15 32 32 H 1.08993 * 109.47613 * 59.99654 * 17 16 15 33 33 H 1.09002 * 113.00018 * 45.33246 * 18 17 16 34 34 H 1.09001 * 113.86592 * 337.34253 * 19 18 17 35 35 H 1.09005 * 113.86629 * 109.05048 * 19 18 17 36 36 H 1.08999 * 113.86407 * 221.76571 * 21 20 19 37 37 H 1.08999 * 113.86424 * 90.06358 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6822 0.8911 11 6 4.0233 -0.4717 -1.2491 12 8 5.4514 -0.5400 -1.2817 13 6 5.9639 -1.8751 -1.2889 14 6 5.4719 -2.6117 -0.0402 15 7 4.0025 -2.5798 -0.0058 16 6 3.4866 -3.3260 1.1496 17 6 3.8077 -4.8124 0.9814 18 6 3.2697 -5.5897 2.1845 19 6 4.2442 -5.6439 3.3761 20 8 3.8692 -7.0356 3.4706 21 6 3.4785 -7.1126 2.0849 22 1 -0.4850 0.8400 -0.0004 23 1 3.7093 0.5717 -1.2204 24 1 3.6155 -0.9508 -2.1392 25 1 5.6126 -2.3951 -2.1802 26 1 7.0536 -1.8468 -1.2891 27 1 5.8129 -3.6465 -0.0700 28 1 5.8675 -2.1230 0.8501 29 1 3.9549 -2.9540 2.0608 30 1 2.4068 -3.1927 1.2155 31 1 3.3394 -5.1844 0.0701 32 1 4.8874 -4.9457 0.9155 33 1 2.2548 -5.3015 2.4585 34 1 5.2869 -5.4858 3.1007 35 1 3.9310 -5.0425 4.2296 36 1 2.5593 -7.6736 1.9164 37 1 4.2869 -7.4040 1.4144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261001579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -45.904229 kcal Electronic energy + Delta-G solvation = -18162.528818 eV Core-core repulsion = 15327.598341 eV Total energy + Delta-G solvation = -2834.930477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.29499 -38.91183 -35.60593 -33.23468 -32.07208 -30.57328 -28.21691 -26.50770 -25.75253 -24.93620 -22.27691 -21.50898 -19.95682 -19.37042 -17.07599 -16.41947 -16.17033 -15.72895 -15.42059 -15.27016 -14.60715 -14.34683 -14.00069 -13.54642 -13.30751 -13.02423 -12.70451 -12.57258 -12.20428 -11.66282 -11.54104 -11.15592 -10.81091 -10.62129 -10.48633 -10.40393 -10.35642 -9.90166 -9.70809 -9.55763 -9.35146 -8.92481 -8.56922 -7.52308 -6.20219 -4.20739 3.17734 3.29815 3.32825 3.72890 4.25717 4.27731 4.48286 4.56628 4.96131 5.09821 5.17840 5.28684 5.39617 5.45490 5.51714 5.61758 5.65891 5.73068 5.83587 5.94116 6.01990 6.04277 6.11457 6.20025 6.23820 6.29542 6.35776 6.42186 6.54202 6.79190 7.00223 7.27841 7.75969 7.82076 7.91039 8.50601 8.85326 9.39871 10.91817 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.007143 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.772542 B = 3918.708621 C = 4721.540477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.087 0.913 9 C 0.158 3.842 10 H 0.007 0.993 11 C 0.058 3.942 12 O -0.402 6.402 13 C 0.068 3.932 14 C 0.014 3.986 15 N -0.523 5.523 16 C 0.063 3.937 17 C -0.113 4.113 18 C -0.151 4.151 19 C 0.037 3.963 20 O -0.389 6.389 21 C 0.038 3.962 22 H 0.267 0.733 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.020 0.980 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.335 -8.497 1.686 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.105 0.895 9 C 0.050 3.950 10 H 0.024 0.976 11 C -0.018 4.018 12 O -0.321 6.321 13 C -0.010 4.010 14 C -0.115 4.115 15 N -0.248 5.248 16 C -0.065 4.065 17 C -0.151 4.151 18 C -0.170 4.170 19 C -0.040 4.040 20 O -0.308 6.308 21 C -0.039 4.039 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.101 -8.623 1.470 12.623 hybrid contribution 0.492 1.306 0.557 1.503 sum 9.593 -7.316 2.028 12.234 Atomic orbital electron populations 1.69855 1.06047 1.27159 1.49853 1.24918 0.94778 0.98713 0.94466 0.87109 0.80219 0.84117 0.78543 1.20038 1.21732 1.18791 1.20879 0.87546 0.94962 1.51489 0.89529 1.20272 0.96902 0.84643 0.93199 0.97556 1.23379 0.78169 1.00267 0.99962 1.87867 1.22947 1.26131 1.95176 1.22505 0.97677 0.83856 0.96931 1.22795 0.90797 1.00073 0.97863 1.62111 1.05312 1.15665 1.41696 1.22034 1.02606 0.91245 0.90598 1.21674 1.00199 0.95757 0.97444 1.24308 1.01327 0.95204 0.96127 1.24093 0.98547 0.82711 0.98626 1.89675 1.85466 1.28840 1.26845 1.23996 1.00092 0.96262 0.83576 0.92335 0.90492 0.92263 0.92898 0.89771 0.90734 0.95156 0.96127 0.88540 0.90648 0.92363 0.87650 0.90339 0.89288 0.89322 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.87 21.24 24.34 -169.99 -4.14 17.10 16 4 H -0.27 -6.50 6.90 56.52 0.39 -6.11 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 7 C -0.51 -13.75 8.39 -34.44 -0.29 -14.04 16 8 H 0.09 2.50 6.81 -52.49 -0.36 2.15 16 9 C 0.16 3.73 1.56 -68.75 -0.11 3.62 16 10 H 0.01 0.17 7.21 -51.93 -0.37 -0.20 16 11 C 0.06 1.33 5.73 37.21 0.21 1.54 16 12 O -0.40 -8.40 10.83 -35.23 -0.38 -8.78 16 13 C 0.07 1.13 7.01 37.21 0.26 1.39 16 14 C 0.01 0.23 5.44 -3.71 -0.02 0.21 16 15 N -0.52 -10.47 4.53 -227.73 -1.03 -11.50 16 16 C 0.06 1.13 4.75 -3.83 -0.02 1.11 16 17 C -0.11 -1.56 5.00 -26.73 -0.13 -1.69 16 18 C -0.15 -1.89 3.88 -89.54 -0.35 -2.23 16 19 C 0.04 0.45 8.79 37.64 0.33 0.78 16 20 O -0.39 -5.39 12.46 -35.23 -0.44 -5.83 16 21 C 0.04 0.43 8.79 37.64 0.33 0.76 16 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.08 1.83 3.36 -51.93 -0.17 1.65 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.04 6.38 -51.93 -0.33 0.71 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.37 8.12 -51.93 -0.42 -0.06 16 30 H 0.10 1.99 6.04 -51.93 -0.31 1.67 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.74 6.25 -51.93 -0.32 0.41 16 33 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 285.07 15.07 4.30 4.30 Total: -1.00 -29.97 285.07 -6.49 -36.45 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.69 Total: 0.31 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 0.12 Total: -6.60 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.26 Total: -36.95 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.82 Total: -14.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.10 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.97 -6.49 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.450 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds