Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48502 * 109.46934 * 269.99932 * 3 2 1 5 5 H 1.48496 * 109.47267 * 30.00228 * 3 2 1 6 6 H 1.48501 * 109.46972 * 150.00154 * 3 2 1 7 7 C 1.37876 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99695 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.50569 * 60.08319 * 9 7 2 11 11 C 1.53099 * 109.50354 * 299.99819 * 9 7 2 12 12 O 1.43013 * 109.25452 * 183.21631 * 11 9 7 13 13 C 1.43015 * 113.74057 * 58.66806 * 12 11 9 14 14 C 1.53093 * 109.25957 * 301.32835 * 13 12 11 15 15 N 1.47010 * 109.50551 * 180.21148 * 9 7 2 16 16 C 1.46901 * 111.00342 * 302.32743 * 15 9 7 17 17 C 1.52994 * 109.47072 * 170.00233 * 16 15 9 18 18 C 1.53003 * 109.47043 * 180.02562 * 17 16 15 19 19 C 1.54026 * 113.81556 * 273.50272 * 18 17 16 20 20 O 1.44446 * 85.42841 * 223.23557 * 19 18 17 21 21 C 1.44179 * 93.37704 * 24.09090 * 20 19 18 22 22 H 0.96996 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.50568 * 63.28028 * 11 9 7 24 24 H 1.09003 * 109.50449 * 303.14791 * 11 9 7 25 25 H 1.09007 * 109.50806 * 61.26305 * 13 12 11 26 26 H 1.09004 * 109.50893 * 181.39269 * 13 12 11 27 27 H 1.08997 * 109.51092 * 176.78238 * 14 13 12 28 28 H 1.08997 * 109.50753 * 296.91321 * 14 13 12 29 29 H 1.09000 * 109.46663 * 289.99727 * 16 15 9 30 30 H 1.09001 * 109.47076 * 49.99981 * 16 15 9 31 31 H 1.09007 * 109.47410 * 299.99830 * 17 16 15 32 32 H 1.08993 * 109.47613 * 59.99654 * 17 16 15 33 33 H 1.09002 * 113.00018 * 45.33246 * 18 17 16 34 34 H 1.09001 * 113.86592 * 337.34253 * 19 18 17 35 35 H 1.09005 * 113.86629 * 109.05048 * 19 18 17 36 36 H 1.08999 * 113.86407 * 221.76571 * 21 20 19 37 37 H 1.08999 * 113.86424 * 90.06358 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6822 0.8911 11 6 4.0233 -0.4717 -1.2491 12 8 5.4514 -0.5400 -1.2817 13 6 5.9639 -1.8751 -1.2889 14 6 5.4719 -2.6117 -0.0402 15 7 4.0025 -2.5798 -0.0058 16 6 3.4866 -3.3260 1.1496 17 6 3.8077 -4.8124 0.9814 18 6 3.2697 -5.5897 2.1845 19 6 4.2442 -5.6439 3.3761 20 8 3.8692 -7.0356 3.4706 21 6 3.4785 -7.1126 2.0849 22 1 -0.4850 0.8400 -0.0004 23 1 3.7093 0.5717 -1.2204 24 1 3.6155 -0.9508 -2.1392 25 1 5.6126 -2.3951 -2.1802 26 1 7.0536 -1.8468 -1.2891 27 1 5.8129 -3.6465 -0.0700 28 1 5.8675 -2.1230 0.8501 29 1 3.9549 -2.9540 2.0608 30 1 2.4068 -3.1927 1.2155 31 1 3.3394 -5.1844 0.0701 32 1 4.8874 -4.9457 0.9155 33 1 2.2548 -5.3015 2.4585 34 1 5.2869 -5.4858 3.1007 35 1 3.9310 -5.0425 4.2296 36 1 2.5593 -7.6736 1.9164 37 1 4.2869 -7.4040 1.4144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261001579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -69.241268 kcal Electronic energy + Delta-G solvation = -18163.540788 eV Core-core repulsion = 15327.598341 eV Total energy + Delta-G solvation = -2835.942447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31007 -40.46966 -37.12121 -35.15984 -33.44157 -32.30963 -29.56180 -27.46297 -27.34593 -26.53888 -23.93791 -22.88749 -21.02889 -20.95624 -19.10246 -17.81499 -17.32348 -17.08469 -16.68442 -16.49349 -16.13635 -15.98815 -15.67965 -15.12541 -14.78686 -14.65271 -14.27615 -13.63251 -13.52161 -13.07218 -12.96262 -12.73569 -12.54947 -12.32382 -12.10530 -11.76349 -11.55747 -11.44639 -11.20443 -11.11557 -10.87885 -10.62185 -10.37615 -9.12799 -8.36198 -6.40192 1.23495 1.30475 1.38639 2.22658 2.78680 2.90721 2.92887 3.08397 3.38582 3.89072 4.08913 4.14743 4.24383 4.28345 4.33451 4.40163 4.42421 4.44924 4.53114 4.59924 4.63972 4.75049 4.79956 4.85993 4.95138 5.04035 5.14327 5.17574 5.20913 5.33857 5.38273 5.40200 5.92863 6.16414 6.30372 6.58848 6.67483 7.24102 8.79332 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.007143 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.772542 B = 3918.708621 C = 4721.540477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.162 3.838 10 H -0.012 1.012 11 C 0.066 3.934 12 O -0.412 6.412 13 C 0.058 3.942 14 C 0.013 3.987 15 N -0.534 5.534 16 C 0.066 3.934 17 C -0.096 4.096 18 C -0.154 4.154 19 C 0.038 3.962 20 O -0.413 6.413 21 C 0.044 3.956 22 H 0.269 0.731 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.028 0.972 29 H 0.021 0.979 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -9.183 1.313 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.175 4.175 3 Si 0.755 3.245 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.054 3.946 10 H 0.006 0.994 11 C -0.011 4.011 12 O -0.331 6.331 13 C -0.018 4.018 14 C -0.115 4.115 15 N -0.259 5.259 16 C -0.062 4.062 17 C -0.134 4.134 18 C -0.173 4.173 19 C -0.038 4.038 20 O -0.332 6.332 21 C -0.033 4.033 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.130 0.870 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.791 -9.329 1.093 15.075 hybrid contribution -0.320 1.400 0.688 1.593 sum 11.471 -7.929 1.781 14.058 Atomic orbital electron populations 1.69982 1.07674 1.28137 1.51771 1.25642 0.95410 1.02108 0.94360 0.86166 0.78964 0.80108 0.79223 1.18616 1.21470 1.18371 1.21054 0.89660 0.93634 1.50282 0.92910 1.20042 0.94556 0.87071 0.92970 0.99412 1.23055 0.79750 0.99332 0.98929 1.87848 1.21149 1.28909 1.95191 1.22906 0.99901 0.81932 0.97061 1.22954 0.88177 1.02438 0.97936 1.62097 1.07848 1.13339 1.42595 1.21988 1.00168 0.93924 0.90127 1.21530 1.01557 0.92455 0.97810 1.24270 1.00784 0.96308 0.95982 1.24219 0.99271 0.82036 0.98300 1.89657 1.85758 1.29574 1.28253 1.24148 1.01315 0.94936 0.82861 0.92177 0.91548 0.92701 0.92143 0.85680 0.87033 0.95349 0.96119 0.92444 0.91082 0.90004 0.89218 0.88532 0.89212 0.88355 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.96 21.45 0.30 -56.50 16 2 C 0.02 1.35 5.45 84.65 0.46 1.82 16 3 Si 0.93 44.25 24.34 68.60 1.67 45.92 16 4 H -0.26 -11.78 6.90 99.48 0.69 -11.09 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.26 -12.08 6.53 99.48 0.65 -11.43 16 7 C -0.51 -28.25 8.39 25.60 0.21 -28.03 16 8 H 0.05 3.23 6.81 -2.91 -0.02 3.21 16 9 C 0.16 7.67 1.56 44.18 0.07 7.74 16 10 H -0.01 -0.58 7.21 -2.39 -0.02 -0.60 16 11 C 0.07 2.94 5.73 72.02 0.41 3.36 16 12 O -0.41 -16.15 10.83 -148.98 -1.61 -17.77 16 13 C 0.06 1.72 7.01 72.01 0.50 2.23 16 14 C 0.01 0.39 5.44 86.31 0.47 0.86 16 15 N -0.53 -20.82 4.53 -874.41 -3.96 -24.78 16 16 C 0.07 2.35 4.75 86.30 0.41 2.76 16 17 C -0.10 -2.47 5.00 30.59 0.15 -2.31 16 18 C -0.15 -3.67 3.88 -10.09 -0.04 -3.71 16 19 C 0.04 0.85 8.79 72.29 0.64 1.48 16 20 O -0.41 -10.66 12.46 -148.98 -1.86 -12.52 16 21 C 0.04 0.89 8.79 72.30 0.64 1.53 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.07 3.07 3.36 -2.39 -0.01 3.07 16 24 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.13 2.72 8.14 -2.38 -0.02 2.70 16 27 H 0.11 2.56 6.38 -2.39 -0.02 2.55 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 30 H 0.06 2.48 6.04 -2.39 -0.01 2.47 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.08 1.74 6.25 -2.39 -0.01 1.72 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.10 1.80 7.92 -2.39 -0.02 1.78 16 35 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -65.94 285.07 -0.56 -66.50 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.97 Total: 11.44 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 3.93 Total: -12.29 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.66 Total: -81.28 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -3.47 Total: -30.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.92 kcal Total: -65.94 -0.56 -66.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.742 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds