Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99529 * 2 1 4 4 H 1.48500 * 109.46801 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46944 * 299.99796 * 3 2 1 6 6 H 1.48500 * 109.47574 * 59.99801 * 3 2 1 7 7 C 1.37874 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99421 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00459 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.54001 * 300.11277 * 9 7 2 11 11 C 1.53099 * 109.50544 * 60.21675 * 9 7 2 12 12 O 1.43012 * 109.26086 * 176.78336 * 11 9 7 13 13 C 1.43016 * 113.73892 * 301.33509 * 12 11 9 14 14 C 1.53093 * 109.25976 * 58.66486 * 13 12 11 15 15 N 1.47007 * 109.50722 * 179.97438 * 9 7 2 16 16 C 1.46896 * 110.99951 * 57.67607 * 15 9 7 17 17 C 1.53006 * 109.47007 * 169.99839 * 16 15 9 18 18 C 1.53001 * 109.46959 * 180.02562 * 17 16 15 19 19 C 1.54036 * 113.81587 * 175.00167 * 18 17 16 20 20 O 1.44179 * 85.66382 * 136.73548 * 19 18 17 21 21 C 1.44442 * 93.22864 * 335.92808 * 20 19 18 22 22 H 0.97002 * 120.00800 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.50707 * 296.72025 * 11 9 7 24 24 H 1.09004 * 109.50801 * 56.84919 * 11 9 7 25 25 H 1.08998 * 109.50625 * 178.60413 * 13 12 11 26 26 H 1.09003 * 109.50583 * 298.73155 * 13 12 11 27 27 H 1.09009 * 109.50819 * 183.21640 * 14 13 12 28 28 H 1.09000 * 109.50477 * 63.08946 * 14 13 12 29 29 H 1.08997 * 109.47173 * 49.99820 * 16 15 9 30 30 H 1.08999 * 109.47373 * 289.99379 * 16 15 9 31 31 H 1.08997 * 109.47170 * 59.99979 * 17 16 15 32 32 H 1.08995 * 109.47132 * 299.99818 * 17 16 15 33 33 H 1.09000 * 113.08433 * 43.08880 * 18 17 16 34 34 H 1.09002 * 113.86404 * 250.94985 * 19 18 17 35 35 H 1.09002 * 113.86879 * 22.52428 * 19 18 17 36 36 H 1.09008 * 113.74590 * 269.91647 * 21 20 19 37 37 H 1.08995 * 114.06139 * 138.26913 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 1 0.6229 -2.5566 0.8906 11 6 0.3743 -2.5844 -1.2504 12 8 -0.2804 -3.8554 -1.2822 13 6 0.6197 -4.9668 -1.2833 14 6 1.4990 -4.9057 -0.0316 15 7 2.2059 -3.6170 0.0015 16 6 3.1062 -3.5406 1.1596 17 6 3.9119 -4.8370 1.2657 18 6 4.8493 -4.7576 2.4723 19 6 5.6228 -6.0613 2.7458 20 8 6.7659 -5.2092 2.9604 21 6 6.2243 -4.1415 2.1523 22 1 -0.4851 0.8400 -0.0004 23 1 -0.3726 -1.7908 -1.2264 24 1 0.9963 -2.4730 -2.1386 25 1 0.0504 -5.8963 -1.2832 26 1 1.2489 -4.9247 -2.1725 27 1 2.2250 -5.7185 -0.0567 28 1 0.8747 -5.0017 0.8567 29 1 2.5193 -3.4022 2.0676 30 1 3.7874 -2.6987 1.0354 31 1 4.4988 -4.9754 0.3577 32 1 3.2309 -5.6789 1.3899 33 1 4.3726 -4.3348 3.3567 34 1 5.2931 -6.5904 3.6400 35 1 5.7143 -6.7108 1.8753 36 1 6.5013 -4.2037 1.0999 37 1 6.3708 -3.1470 2.5738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261001581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -53.986300 kcal Electronic energy + Delta-G solvation = -18106.553446 eV Core-core repulsion = 15271.272504 eV Total energy + Delta-G solvation = -2835.280942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.29684 -38.61706 -35.44225 -33.32781 -31.90852 -29.88889 -27.95679 -26.48619 -25.51933 -24.89616 -22.40300 -21.26871 -19.96314 -19.19442 -16.70428 -16.33958 -15.95740 -15.66147 -15.09488 -15.00004 -14.56370 -14.34013 -13.73689 -13.52660 -13.06096 -12.89763 -12.66190 -12.24093 -12.03844 -11.39648 -11.06314 -11.05865 -10.88902 -10.71570 -10.56350 -10.34446 -10.22737 -10.05259 -9.67385 -9.53478 -9.12362 -8.71245 -8.38689 -7.29666 -6.15175 -4.19482 3.23347 3.31763 3.35415 3.73707 4.26064 4.31521 4.67093 4.89157 5.02423 5.16635 5.19861 5.32543 5.42890 5.48664 5.64624 5.65711 5.75983 5.85750 5.91644 5.99511 6.07970 6.11895 6.23814 6.28816 6.38859 6.55806 6.63051 6.68953 6.90916 7.25157 7.48925 7.66596 7.86445 8.13926 8.17402 8.50114 8.87793 9.46277 10.93020 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.007787 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.227113 B = 3594.925594 C = 4905.082568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.188 3.812 10 H 0.008 0.992 11 C 0.069 3.931 12 O -0.405 6.405 13 C 0.067 3.933 14 C 0.014 3.986 15 N -0.534 5.534 16 C 0.071 3.929 17 C -0.122 4.122 18 C -0.151 4.151 19 C 0.037 3.963 20 O -0.390 6.390 21 C 0.039 3.961 22 H 0.264 0.736 23 H 0.122 0.878 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -9.467 2.069 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.081 3.919 10 H 0.025 0.975 11 C -0.007 4.007 12 O -0.324 6.324 13 C -0.011 4.011 14 C -0.114 4.114 15 N -0.260 5.260 16 C -0.057 4.057 17 C -0.159 4.159 18 C -0.170 4.170 19 C -0.040 4.040 20 O -0.309 6.309 21 C -0.038 4.038 22 H 0.074 0.926 23 H 0.140 0.860 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.657 -9.333 1.783 11.602 hybrid contribution 0.024 0.937 0.694 1.167 sum 6.681 -8.396 2.477 11.012 Atomic orbital electron populations 1.69852 1.05937 1.26943 1.50472 1.24995 0.94954 0.99440 0.94847 0.86401 0.80028 0.83145 0.77655 1.19644 1.20845 1.21010 1.21093 0.93451 0.89230 1.50820 0.91513 1.19872 0.89476 0.88200 0.94311 0.97461 1.23135 0.97519 0.82754 0.97309 1.87907 1.33882 1.15578 1.95026 1.22444 0.92016 0.90183 0.96467 1.22790 0.96566 0.94165 0.97929 1.62383 1.20918 1.01986 1.40681 1.21901 0.95397 0.96475 0.91880 1.21863 0.98057 0.99197 0.96831 1.24294 0.96478 0.95921 1.00323 1.23984 0.84684 0.94113 1.01213 1.89684 1.42537 1.29606 1.69052 1.24111 0.90903 0.92697 0.96059 0.92608 0.85993 0.94824 0.90416 0.93574 0.91042 0.95429 0.95666 0.90217 0.91082 0.91666 0.88082 0.89586 0.90290 0.89897 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 11.37 55.43 0.63 -24.28 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.47 8.03 -34.44 -0.28 -13.74 16 8 H 0.07 1.76 6.56 -52.49 -0.34 1.41 16 9 C 0.19 4.72 1.93 -68.76 -0.13 4.59 16 10 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 11 C 0.07 1.71 6.02 37.21 0.22 1.94 16 12 O -0.40 -9.26 10.83 -35.23 -0.38 -9.64 16 13 C 0.07 1.22 7.01 37.21 0.26 1.48 16 14 C 0.01 0.26 4.94 -3.71 -0.02 0.24 16 15 N -0.53 -11.21 4.68 -227.73 -1.07 -12.28 16 16 C 0.07 1.31 4.71 -3.82 -0.02 1.30 16 17 C -0.12 -1.69 4.35 -26.73 -0.12 -1.80 16 18 C -0.15 -1.87 3.90 -89.54 -0.35 -2.22 16 19 C 0.04 0.41 8.78 37.61 0.33 0.74 16 20 O -0.39 -5.44 12.47 -35.23 -0.44 -5.88 16 21 C 0.04 0.49 8.78 37.61 0.33 0.82 16 22 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.12 3.32 6.19 -51.93 -0.32 2.99 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.08 6.05 -51.92 -0.31 0.76 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.08 1.56 6.72 -51.93 -0.35 1.21 16 31 H 0.07 0.98 7.83 -51.93 -0.41 0.57 16 32 H 0.06 0.86 6.27 -51.93 -0.33 0.53 16 33 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.08 0.98 7.89 -51.92 -0.41 0.57 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -29.03 291.07 -7.58 -36.61 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.83 Total: 0.54 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 0.14 Total: -5.16 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.44 Total: -36.56 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.82 Total: -15.52 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.03 -7.58 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.381 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds