Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99529 * 2 1 4 4 H 1.48500 * 109.46801 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46944 * 299.99796 * 3 2 1 6 6 H 1.48500 * 109.47574 * 59.99801 * 3 2 1 7 7 C 1.37874 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99421 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00459 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.54001 * 300.11277 * 9 7 2 11 11 C 1.53099 * 109.50544 * 60.21675 * 9 7 2 12 12 O 1.43012 * 109.26086 * 176.78336 * 11 9 7 13 13 C 1.43016 * 113.73892 * 301.33509 * 12 11 9 14 14 C 1.53093 * 109.25976 * 58.66486 * 13 12 11 15 15 N 1.47007 * 109.50722 * 179.97438 * 9 7 2 16 16 C 1.46896 * 110.99951 * 57.67607 * 15 9 7 17 17 C 1.53006 * 109.47007 * 169.99839 * 16 15 9 18 18 C 1.53001 * 109.46959 * 180.02562 * 17 16 15 19 19 C 1.54036 * 113.81587 * 175.00167 * 18 17 16 20 20 O 1.44179 * 85.66382 * 136.73548 * 19 18 17 21 21 C 1.44442 * 93.22864 * 335.92808 * 20 19 18 22 22 H 0.97002 * 120.00800 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.50707 * 296.72025 * 11 9 7 24 24 H 1.09004 * 109.50801 * 56.84919 * 11 9 7 25 25 H 1.08998 * 109.50625 * 178.60413 * 13 12 11 26 26 H 1.09003 * 109.50583 * 298.73155 * 13 12 11 27 27 H 1.09009 * 109.50819 * 183.21640 * 14 13 12 28 28 H 1.09000 * 109.50477 * 63.08946 * 14 13 12 29 29 H 1.08997 * 109.47173 * 49.99820 * 16 15 9 30 30 H 1.08999 * 109.47373 * 289.99379 * 16 15 9 31 31 H 1.08997 * 109.47170 * 59.99979 * 17 16 15 32 32 H 1.08995 * 109.47132 * 299.99818 * 17 16 15 33 33 H 1.09000 * 113.08433 * 43.08880 * 18 17 16 34 34 H 1.09002 * 113.86404 * 250.94985 * 19 18 17 35 35 H 1.09002 * 113.86879 * 22.52428 * 19 18 17 36 36 H 1.09008 * 113.74590 * 269.91647 * 21 20 19 37 37 H 1.08995 * 114.06139 * 138.26913 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 1 0.6229 -2.5566 0.8906 11 6 0.3743 -2.5844 -1.2504 12 8 -0.2804 -3.8554 -1.2822 13 6 0.6197 -4.9668 -1.2833 14 6 1.4990 -4.9057 -0.0316 15 7 2.2059 -3.6170 0.0015 16 6 3.1062 -3.5406 1.1596 17 6 3.9119 -4.8370 1.2657 18 6 4.8493 -4.7576 2.4723 19 6 5.6228 -6.0613 2.7458 20 8 6.7659 -5.2092 2.9604 21 6 6.2243 -4.1415 2.1523 22 1 -0.4851 0.8400 -0.0004 23 1 -0.3726 -1.7908 -1.2264 24 1 0.9963 -2.4730 -2.1386 25 1 0.0504 -5.8963 -1.2832 26 1 1.2489 -4.9247 -2.1725 27 1 2.2250 -5.7185 -0.0567 28 1 0.8747 -5.0017 0.8567 29 1 2.5193 -3.4022 2.0676 30 1 3.7874 -2.6987 1.0354 31 1 4.4988 -4.9754 0.3577 32 1 3.2309 -5.6789 1.3899 33 1 4.3726 -4.3348 3.3567 34 1 5.2931 -6.5904 3.6400 35 1 5.7143 -6.7108 1.8753 36 1 6.5013 -4.2037 1.0999 37 1 6.3708 -3.1470 2.5738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261001581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = -75.171405 kcal Electronic energy + Delta-G solvation = -18107.472101 eV Core-core repulsion = 15271.272504 eV Total energy + Delta-G solvation = -2836.199597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30499 -40.29554 -37.05704 -35.24638 -33.26958 -31.67156 -29.36306 -27.44725 -27.29954 -26.49331 -24.10093 -22.75486 -20.97824 -20.91660 -18.64093 -17.49407 -17.32120 -16.87611 -16.70413 -16.37907 -16.24924 -15.83818 -15.51835 -15.15894 -14.59011 -14.37261 -13.97283 -13.59223 -13.37607 -12.93979 -12.80835 -12.65545 -12.48494 -12.23359 -12.11627 -12.04120 -11.77822 -11.25819 -11.11761 -11.00150 -10.70567 -10.59736 -10.23896 -9.03858 -8.20300 -6.32307 1.40261 1.42384 1.54143 2.37958 2.80387 3.05078 3.07991 3.29055 3.40555 3.91995 4.16835 4.22097 4.28281 4.30776 4.40006 4.46703 4.49917 4.57404 4.61953 4.67000 4.80292 4.85908 4.92297 4.97227 5.01996 5.13625 5.20619 5.23442 5.29973 5.40864 5.52072 5.64642 5.98517 6.24790 6.46510 6.64599 6.82821 7.37772 8.87686 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.007787 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.227113 B = 3594.925594 C = 4905.082568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.195 3.805 10 H -0.038 1.038 11 C 0.083 3.917 12 O -0.422 6.422 13 C 0.057 3.943 14 C 0.014 3.986 15 N -0.540 5.540 16 C 0.073 3.927 17 C -0.105 4.105 18 C -0.151 4.151 19 C 0.044 3.956 20 O -0.413 6.413 21 C 0.035 3.965 22 H 0.265 0.735 23 H 0.092 0.908 24 H 0.029 0.971 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.018 0.982 29 H 0.005 0.995 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 -10.917 1.826 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.087 3.913 10 H -0.020 1.020 11 C 0.006 3.994 12 O -0.341 6.341 13 C -0.019 4.019 14 C -0.114 4.114 15 N -0.265 5.265 16 C -0.054 4.054 17 C -0.143 4.143 18 C -0.170 4.170 19 C -0.033 4.033 20 O -0.333 6.333 21 C -0.041 4.041 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.047 0.953 25 H 0.135 0.865 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.081 -10.811 1.540 13.585 hybrid contribution -0.437 1.302 0.782 1.580 sum 7.644 -9.509 2.321 12.419 Atomic orbital electron populations 1.69990 1.07375 1.27761 1.51119 1.25806 0.95706 1.02798 0.94401 0.85397 0.79071 0.78926 0.77631 1.18771 1.20380 1.20768 1.21343 0.93495 0.90272 1.50776 0.91620 1.19610 0.89625 0.89670 0.92388 1.02013 1.22722 0.96397 0.83431 0.96882 1.87859 1.35325 1.15832 1.95132 1.22841 0.92341 0.89872 0.96896 1.22934 0.97320 0.93730 0.97427 1.62343 1.20234 1.02088 1.41818 1.21905 0.94765 0.98743 0.90025 1.21723 0.97873 0.96687 0.97977 1.24249 0.96027 0.97302 0.99415 1.24157 0.82881 0.93426 1.02791 1.89668 1.43695 1.30449 1.69482 1.24213 0.90793 0.92628 0.96468 0.92535 0.89003 0.95256 0.86489 0.92645 0.86886 0.96398 0.97696 0.91906 0.90144 0.90244 0.88718 0.87959 0.88452 0.88996 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.00 11.37 21.45 0.24 -52.76 16 2 C 0.01 0.65 5.30 84.65 0.45 1.10 16 3 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.52 -28.23 8.03 25.60 0.21 -28.02 16 8 H 0.07 3.50 6.56 -2.91 -0.02 3.48 16 9 C 0.19 10.05 1.93 44.18 0.09 10.14 16 10 H -0.04 -2.23 8.14 -2.38 -0.02 -2.25 16 11 C 0.08 4.21 6.02 72.02 0.43 4.64 16 12 O -0.42 -19.27 10.83 -148.98 -1.61 -20.88 16 13 C 0.06 1.97 7.01 72.01 0.50 2.47 16 14 C 0.01 0.48 4.94 86.31 0.43 0.90 16 15 N -0.54 -22.40 4.68 -874.40 -4.09 -26.49 16 16 C 0.07 2.67 4.71 86.31 0.41 3.08 16 17 C -0.11 -2.65 4.35 30.60 0.13 -2.51 16 18 C -0.15 -3.43 3.90 -10.09 -0.04 -3.47 16 19 C 0.04 0.84 8.78 72.27 0.63 1.48 16 20 O -0.41 -10.67 12.47 -148.98 -1.86 -12.52 16 21 C 0.04 0.83 8.78 72.28 0.63 1.46 16 22 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.09 5.22 6.19 -2.39 -0.01 5.20 16 24 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.11 2.94 6.05 -2.38 -0.01 2.92 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 30 H 0.06 2.47 6.72 -2.39 -0.02 2.45 16 31 H 0.08 1.93 7.83 -2.39 -0.02 1.91 16 32 H 0.08 1.79 6.27 -2.39 -0.01 1.78 16 33 H 0.09 2.28 8.13 -2.39 -0.02 2.26 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.09 1.96 7.89 -2.38 -0.02 1.94 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -64.04 291.07 -0.38 -64.42 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.04 Total: 12.08 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 3.87 Total: -8.73 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -3.85 Total: -79.25 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -3.47 Total: -33.40 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.04 -0.38 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.755 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds