Wall clock time and date at job start Mon Mar 30 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48503 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47300 * 300.00064 * 3 2 1 6 6 H 1.48493 * 109.47303 * 60.00675 * 3 2 1 7 7 C 1.37877 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99636 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47222 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.54474 * 305.11333 * 10 9 7 12 12 C 1.53103 * 109.50526 * 185.00078 * 10 9 7 13 13 N 1.47016 * 109.29298 * 183.24310 * 12 10 9 14 14 C 1.46894 * 110.99844 * 182.37346 * 13 12 10 15 15 C 1.53002 * 109.47255 * 169.99520 * 14 13 12 16 16 C 1.54029 * 113.81998 * 271.18675 * 15 14 13 17 17 O 1.44172 * 85.51952 * 223.19226 * 16 15 14 18 18 C 1.44179 * 93.34077 * 24.19316 * 17 16 15 19 19 C 1.47009 * 110.75376 * 58.59374 * 13 12 10 20 20 C 1.53093 * 109.26071 * 301.38357 * 19 13 12 21 21 O 1.43015 * 109.25965 * 56.84798 * 20 19 13 22 22 H 0.97006 * 119.99508 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46790 * 60.00468 * 9 7 2 24 24 H 1.08998 * 109.46975 * 300.01119 * 9 7 2 25 25 H 1.09002 * 109.50635 * 63.28401 * 12 10 9 26 26 H 1.09003 * 109.50698 * 303.20013 * 12 10 9 27 27 H 1.09000 * 109.47347 * 289.99759 * 14 13 12 28 28 H 1.09006 * 109.47458 * 49.99988 * 14 13 12 29 29 H 1.09002 * 112.99471 * 43.17362 * 15 14 13 30 30 H 1.08998 * 113.86398 * 337.34517 * 16 15 14 31 31 H 1.09006 * 113.86556 * 109.04546 * 16 15 14 32 32 H 1.08997 * 113.86798 * 221.66072 * 18 17 16 33 33 H 1.08998 * 113.98309 * 89.96381 * 18 17 16 34 34 H 1.09001 * 109.50528 * 61.32115 * 19 13 12 35 35 H 1.09005 * 109.50420 * 181.40891 * 19 13 12 36 36 H 1.08994 * 109.50954 * 176.78275 * 20 19 13 37 37 H 1.09004 * 109.51138 * 296.91641 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9312 -3.5553 -0.8408 12 6 1.4846 -4.9849 -0.1263 13 7 2.4369 -6.1021 -0.0477 14 6 1.7525 -7.3903 -0.2209 15 6 2.7913 -8.5020 -0.3829 16 6 3.2243 -8.7410 -1.8416 17 8 3.1179 -10.1433 -1.5245 18 6 2.1839 -9.9159 -0.4500 19 6 3.1788 -6.0659 1.2209 20 6 3.9232 -4.7329 1.3328 21 8 2.9858 -3.6584 1.2230 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8896 25 1 0.9649 -5.0162 -1.0840 26 1 0.7599 -5.0666 0.6839 27 1 1.1354 -7.5944 0.6541 28 1 1.1218 -7.3502 -1.1091 29 1 3.6229 -8.4129 0.3161 30 1 2.4978 -8.3992 -2.5789 31 1 4.2411 -8.4139 -2.0591 32 1 2.3754 -10.5207 0.4363 33 1 1.1391 -9.9327 -0.7602 34 1 2.4817 -6.1645 2.0531 35 1 3.8953 -6.8870 1.2470 36 1 4.4285 -4.6779 2.2970 37 1 4.6581 -4.6579 0.5313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:06 Heat of formation + Delta-G solvation = -79.427384 kcal Electronic energy + Delta-G solvation = -17697.264692 eV Core-core repulsion = 14860.880542 eV Total energy + Delta-G solvation = -2836.384150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42881 -40.32826 -36.83122 -35.36157 -33.17754 -31.91655 -29.84008 -27.87314 -27.39178 -25.43480 -24.77699 -22.78720 -21.30007 -20.84359 -18.47193 -17.60963 -17.29776 -17.10623 -16.75371 -16.56151 -16.38097 -15.83480 -15.52949 -15.14133 -14.69101 -14.12500 -13.95313 -13.55843 -13.51945 -13.36119 -12.91367 -12.67341 -12.51031 -12.24780 -12.15798 -11.81989 -11.71570 -11.57573 -11.35613 -11.00421 -10.59469 -10.56879 -10.34320 -9.38046 -8.18598 -6.26821 1.40638 1.41316 1.54951 2.42615 2.67717 2.84261 3.01944 3.19554 3.44232 3.75638 3.99044 4.02547 4.21718 4.27371 4.28183 4.34393 4.38209 4.45965 4.56819 4.65165 4.70319 4.75422 4.77000 4.82843 4.98539 5.01476 5.13419 5.21918 5.25121 5.39705 5.54465 5.79238 5.90520 6.01966 6.22587 6.55833 6.85569 7.40490 8.93726 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050329 B = 0.004547 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.205912 B = 6156.921695 C = 6335.769942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.033 3.967 10 C 0.112 3.888 11 H 0.047 0.953 12 C 0.036 3.964 13 N -0.539 5.539 14 C 0.058 3.942 15 C -0.143 4.143 16 C 0.044 3.956 17 O -0.412 6.412 18 C 0.041 3.959 19 C 0.022 3.978 20 C 0.051 3.949 21 O -0.399 6.399 22 H 0.263 0.737 23 H 0.018 0.982 24 H -0.007 1.007 25 H 0.088 0.912 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.035 0.965 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -17.827 0.163 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.005 4.005 10 C 0.054 3.946 11 H 0.065 0.935 12 C -0.092 4.092 13 N -0.264 5.264 14 C -0.070 4.070 15 C -0.161 4.161 16 C -0.032 4.032 17 O -0.332 6.332 18 C -0.036 4.036 19 C -0.106 4.106 20 C -0.025 4.025 21 O -0.319 6.319 22 H 0.072 0.928 23 H 0.036 0.964 24 H 0.012 0.988 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.805 -17.767 -0.189 18.693 hybrid contribution -0.571 0.977 0.579 1.271 sum 5.235 -16.790 0.389 17.591 Atomic orbital electron populations 1.70082 1.07600 1.27650 1.52152 1.25901 0.95772 1.03117 0.94924 0.85411 0.78964 0.78927 0.77817 1.19005 1.20050 1.20488 1.21494 0.93207 0.91966 1.49696 0.92838 1.18999 0.93554 0.92256 0.95669 1.22101 0.92827 0.93776 0.85864 0.93520 1.22669 0.93966 0.91007 1.01534 1.62240 1.27194 1.02624 1.34313 1.22266 0.95533 0.87553 1.01632 1.24329 0.99213 0.94068 0.98534 1.24066 1.02973 0.79955 0.96255 1.89645 1.63157 1.26845 1.53559 1.24138 0.94479 0.94065 0.90879 1.22843 0.98424 0.99311 0.89996 1.22844 0.91332 0.85588 1.02770 1.88098 1.54582 1.49680 1.39509 0.92776 0.96388 0.98818 0.89382 0.95279 0.93825 0.89830 0.87449 0.89551 0.88866 0.87754 0.88977 0.94638 0.87184 0.87184 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -30.83 8.89 25.60 0.23 -30.61 16 8 H 0.05 3.12 7.74 -2.91 -0.02 3.09 16 9 C 0.03 1.76 4.69 29.85 0.14 1.90 16 10 C 0.11 4.85 2.75 30.63 0.08 4.93 16 11 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 12 C 0.04 1.25 4.93 86.32 0.43 1.68 16 13 N -0.54 -14.54 4.73 -895.21 -4.23 -18.77 16 14 C 0.06 1.18 4.82 86.31 0.42 1.59 16 15 C -0.14 -2.44 3.96 -10.09 -0.04 -2.48 16 16 C 0.04 0.82 8.77 72.27 0.63 1.45 16 17 O -0.41 -8.94 12.45 -148.98 -1.86 -10.79 16 18 C 0.04 0.63 8.79 72.27 0.64 1.27 16 19 C 0.02 0.55 5.47 86.31 0.47 1.03 16 20 C 0.05 1.56 7.01 72.01 0.50 2.06 16 21 O -0.40 -17.17 10.23 -148.98 -1.52 -18.69 16 22 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.09 2.86 8.09 -2.39 -0.02 2.84 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 0.86 8.12 -2.39 -0.02 0.85 16 28 H 0.08 1.64 7.73 -2.38 -0.02 1.62 16 29 H 0.11 1.77 6.24 -2.39 -0.01 1.76 16 30 H 0.09 1.51 7.89 -2.39 -0.02 1.49 16 31 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 2.06 6.22 -2.38 -0.01 2.05 16 36 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -68.48 298.79 -0.31 -68.79 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.03 Total: 5.74 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 3.96 Total: -16.72 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -3.95 Total: -75.72 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -3.38 Total: -29.49 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.48 -0.31 -68.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.633 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds