Wall clock time and date at job start Mon Mar 30 2020 03:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.50601 * 54.91130 * 10 9 7 12 12 C 1.53093 * 109.50774 * 174.99946 * 10 9 7 13 13 N 1.47012 * 109.25824 * 176.77998 * 12 10 9 14 14 C 1.46904 * 111.00021 * 177.60875 * 13 12 10 15 15 C 1.53000 * 109.47056 * 170.00264 * 14 13 12 16 16 C 1.54032 * 113.81636 * 273.50507 * 15 14 13 17 17 O 1.44443 * 85.42652 * 223.23787 * 16 15 14 18 18 C 1.44181 * 93.37838 * 24.08953 * 17 16 15 19 19 C 1.47012 * 110.75602 * 301.38631 * 13 12 10 20 20 C 1.53094 * 109.25951 * 58.61510 * 19 13 12 21 21 O 1.43020 * 109.25864 * 303.15178 * 20 19 13 22 22 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 24 24 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 25 25 H 1.08998 * 109.50907 * 296.71804 * 12 10 9 26 26 H 1.09004 * 109.50633 * 56.80818 * 12 10 9 27 27 H 1.09004 * 109.46987 * 289.99888 * 14 13 12 28 28 H 1.08994 * 109.47010 * 50.00319 * 14 13 12 29 29 H 1.09002 * 113.00080 * 45.33582 * 15 14 13 30 30 H 1.09004 * 113.86371 * 337.34595 * 16 15 14 31 31 H 1.08995 * 113.86402 * 109.04859 * 16 15 14 32 32 H 1.08999 * 113.86107 * 221.76322 * 18 17 16 33 33 H 1.08998 * 113.98093 * 90.07910 * 18 17 16 34 34 H 1.08999 * 109.51057 * 178.55465 * 19 13 12 35 35 H 1.09005 * 109.50487 * 298.63733 * 19 13 12 36 36 H 1.09001 * 109.50530 * 63.08527 * 20 19 13 37 37 H 1.08994 * 109.50856 * 183.22253 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 1 3.5862 -3.1765 -0.8400 12 6 5.5472 -2.6395 -0.1242 13 7 6.0375 -4.0233 -0.0462 14 6 7.4954 -4.0757 -0.2192 15 6 7.9981 -5.4821 0.1131 16 6 8.2949 -5.6993 1.6089 17 8 9.4895 -6.3728 1.1555 18 6 9.5119 -5.6685 -0.1024 19 6 5.6347 -4.6480 1.2222 20 6 4.1080 -4.6251 1.3339 21 8 3.6473 -3.2756 1.2247 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6806 -0.8889 24 1 3.8745 -0.6801 0.8911 25 1 5.8347 -2.2049 -1.0816 26 1 5.9800 -2.0532 0.6864 27 1 7.7477 -3.8343 -1.2517 28 1 7.9667 -3.3543 0.4483 29 1 7.3898 -6.2685 -0.3337 30 1 8.4894 -4.7780 2.1582 31 1 7.5812 -6.3536 2.1096 32 1 9.7615 -6.2986 -0.9561 33 1 10.0786 -4.7378 -0.0790 34 1 5.9861 -5.6795 1.2476 35 1 6.0696 -4.0948 2.0547 36 1 3.6754 -5.2234 0.5320 37 1 3.8074 -5.0353 2.2979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:08 Heat of formation + Delta-G solvation = -50.133286 kcal Electronic energy + Delta-G solvation = -17859.951884 eV Core-core repulsion = 15024.838022 eV Total energy + Delta-G solvation = -2835.113863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80670 -39.02545 -35.62839 -33.33806 -31.64769 -30.88199 -28.77263 -26.83701 -26.64998 -23.81184 -23.45990 -20.86082 -20.30048 -19.82703 -17.09228 -16.72181 -16.27455 -16.04937 -15.50172 -15.38854 -14.76071 -14.49714 -14.23922 -13.76963 -13.46670 -13.12802 -12.71041 -12.44581 -12.14871 -12.00112 -11.62804 -11.30141 -11.13414 -10.95357 -10.74617 -10.60138 -10.38485 -9.96000 -9.82909 -9.49644 -9.28161 -8.89180 -8.50478 -8.27293 -5.98942 -3.95586 3.31538 3.39556 3.41229 3.42216 3.72279 4.09271 4.42516 4.47988 4.53455 4.88099 4.98108 5.01808 5.12437 5.18485 5.28283 5.33251 5.37179 5.40544 5.48346 5.63392 5.68667 5.75872 5.82027 5.89828 5.91153 5.93679 6.09863 6.36077 6.56987 7.01535 7.02367 7.07492 7.25551 7.75913 7.99542 8.59819 9.08674 9.62171 11.14854 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049543 B = 0.004946 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.028026 B = 5659.294625 C = 5995.366621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.111 3.889 11 H 0.061 0.939 12 C 0.021 3.979 13 N -0.535 5.535 14 C 0.056 3.944 15 C -0.153 4.153 16 C 0.035 3.965 17 O -0.385 6.385 18 C 0.040 3.960 19 C 0.013 3.987 20 C 0.059 3.941 21 O -0.361 6.361 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.024 0.976 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.332 -9.859 0.385 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.053 3.947 11 H 0.079 0.921 12 C -0.107 4.107 13 N -0.260 5.260 14 C -0.072 4.072 15 C -0.172 4.172 16 C -0.041 4.041 17 O -0.304 6.304 18 C -0.037 4.037 19 C -0.115 4.115 20 C -0.019 4.019 21 O -0.280 6.280 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.017 -10.102 0.264 19.791 hybrid contribution 0.829 1.383 0.376 1.656 sum 17.846 -8.718 0.641 19.872 Atomic orbital electron populations 1.69912 1.06225 1.26702 1.51481 1.25000 0.94738 0.98930 0.94874 0.86830 0.80395 0.83953 0.78386 1.20317 1.21343 1.19151 1.20999 0.88832 0.94646 1.49984 0.90663 1.19627 0.98215 0.89705 0.96945 1.22209 0.89395 0.96552 0.86548 0.92133 1.23003 0.98517 0.87619 1.01549 1.62340 1.10930 1.18814 1.33908 1.22227 0.88190 0.95065 1.01733 1.24449 0.97028 0.99347 0.96385 1.24303 0.86591 0.97280 0.95961 1.89722 1.47886 1.59585 1.33175 1.23942 0.94836 0.96897 0.88026 1.22973 0.98235 0.99747 0.90530 1.22564 0.91404 0.86252 1.01659 1.88191 1.76285 1.24154 1.39326 0.92814 0.95516 0.95821 0.89996 0.94263 0.90060 0.94510 0.87001 0.90226 0.88899 0.88998 0.90165 0.90002 0.94307 0.92890 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -14.68 9.44 -34.44 -0.33 -15.01 16 8 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 9 C -0.01 -0.18 3.76 -27.88 -0.10 -0.28 16 10 C 0.11 2.28 2.75 -26.68 -0.07 2.20 16 11 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.02 0.34 4.91 -3.72 -0.02 0.32 16 13 N -0.54 -7.40 4.88 -234.31 -1.14 -8.54 16 14 C 0.06 0.60 5.20 -3.82 -0.02 0.58 16 15 C -0.15 -1.43 3.03 -89.54 -0.27 -1.70 16 16 C 0.04 0.34 7.01 37.64 0.26 0.60 16 17 O -0.38 -4.35 12.46 -35.23 -0.44 -4.79 16 18 C 0.04 0.34 8.79 37.64 0.33 0.68 16 19 C 0.01 0.17 4.41 -3.71 -0.02 0.16 16 20 C 0.06 0.92 7.01 37.21 0.26 1.18 16 21 O -0.36 -7.61 10.23 -35.23 -0.36 -7.97 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 23 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 24 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.40 7.81 -51.93 -0.41 -0.01 16 29 H 0.11 1.07 8.02 -51.93 -0.42 0.66 16 30 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.09 0.80 7.23 -51.93 -0.38 0.42 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.08 0.87 5.18 -51.93 -0.27 0.61 16 35 H 0.04 0.51 8.06 -51.93 -0.42 0.10 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -32.47 291.88 -7.54 -40.01 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.03 Total: -3.25 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.07 Total: -9.44 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.37 Total: -36.00 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.80 Total: -12.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.47 -7.54 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.127 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds