Wall clock time and date at job start Mon Mar 30 2020 03:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.50601 * 54.91130 * 10 9 7 12 12 C 1.53093 * 109.50774 * 174.99946 * 10 9 7 13 13 N 1.47012 * 109.25824 * 176.77998 * 12 10 9 14 14 C 1.46904 * 111.00021 * 177.60875 * 13 12 10 15 15 C 1.53000 * 109.47056 * 170.00264 * 14 13 12 16 16 C 1.54032 * 113.81636 * 273.50507 * 15 14 13 17 17 O 1.44443 * 85.42652 * 223.23787 * 16 15 14 18 18 C 1.44181 * 93.37838 * 24.08953 * 17 16 15 19 19 C 1.47012 * 110.75602 * 301.38631 * 13 12 10 20 20 C 1.53094 * 109.25951 * 58.61510 * 19 13 12 21 21 O 1.43020 * 109.25864 * 303.15178 * 20 19 13 22 22 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 24 24 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 25 25 H 1.08998 * 109.50907 * 296.71804 * 12 10 9 26 26 H 1.09004 * 109.50633 * 56.80818 * 12 10 9 27 27 H 1.09004 * 109.46987 * 289.99888 * 14 13 12 28 28 H 1.08994 * 109.47010 * 50.00319 * 14 13 12 29 29 H 1.09002 * 113.00080 * 45.33582 * 15 14 13 30 30 H 1.09004 * 113.86371 * 337.34595 * 16 15 14 31 31 H 1.08995 * 113.86402 * 109.04859 * 16 15 14 32 32 H 1.08999 * 113.86107 * 221.76322 * 18 17 16 33 33 H 1.08998 * 113.98093 * 90.07910 * 18 17 16 34 34 H 1.08999 * 109.51057 * 178.55465 * 19 13 12 35 35 H 1.09005 * 109.50487 * 298.63733 * 19 13 12 36 36 H 1.09001 * 109.50530 * 63.08527 * 20 19 13 37 37 H 1.08994 * 109.50856 * 183.22253 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 1 3.5862 -3.1765 -0.8400 12 6 5.5472 -2.6395 -0.1242 13 7 6.0375 -4.0233 -0.0462 14 6 7.4954 -4.0757 -0.2192 15 6 7.9981 -5.4821 0.1131 16 6 8.2949 -5.6993 1.6089 17 8 9.4895 -6.3728 1.1555 18 6 9.5119 -5.6685 -0.1024 19 6 5.6347 -4.6480 1.2222 20 6 4.1080 -4.6251 1.3339 21 8 3.6473 -3.2756 1.2247 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6806 -0.8889 24 1 3.8745 -0.6801 0.8911 25 1 5.8347 -2.2049 -1.0816 26 1 5.9800 -2.0532 0.6864 27 1 7.7477 -3.8343 -1.2517 28 1 7.9667 -3.3543 0.4483 29 1 7.3898 -6.2685 -0.3337 30 1 8.4894 -4.7780 2.1582 31 1 7.5812 -6.3536 2.1096 32 1 9.7615 -6.2986 -0.9561 33 1 10.0786 -4.7378 -0.0790 34 1 5.9861 -5.6795 1.2476 35 1 6.0696 -4.0948 2.0547 36 1 3.6754 -5.2234 0.5320 37 1 3.8074 -5.0353 2.2979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:08 Heat of formation + Delta-G solvation = -75.325117 kcal Electronic energy + Delta-G solvation = -17861.044284 eV Core-core repulsion = 15024.838022 eV Total energy + Delta-G solvation = -2836.206262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60495 -40.28623 -36.85671 -35.31485 -33.43661 -31.83824 -30.29753 -28.01791 -27.53254 -25.06806 -24.88768 -22.44438 -21.30304 -20.98068 -18.87280 -17.92702 -17.39821 -17.07435 -16.61415 -16.54439 -16.26370 -15.72597 -15.51481 -15.20901 -14.79918 -14.53963 -13.90391 -13.72026 -13.56782 -13.41937 -12.90110 -12.59013 -12.43986 -12.32074 -12.03204 -11.85380 -11.74528 -11.48308 -11.45781 -11.10557 -10.74833 -10.65374 -10.36581 -9.36234 -8.25453 -6.28811 1.36825 1.40140 1.51469 2.38685 2.67972 2.79020 2.97825 3.15344 3.32000 3.74497 3.96806 4.01390 4.14561 4.22654 4.23418 4.33241 4.35899 4.40050 4.53729 4.61734 4.65969 4.72696 4.77446 4.83414 4.88259 4.97786 5.04178 5.14924 5.19215 5.21485 5.39614 5.62911 5.91200 6.03243 6.28453 6.51543 6.78167 7.33200 8.92162 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049543 B = 0.004946 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.028026 B = 5659.294625 C = 5995.366621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.519 4.519 8 H 0.025 0.975 9 C -0.005 4.005 10 C 0.112 3.888 11 H 0.041 0.959 12 C 0.034 3.966 13 N -0.544 5.544 14 C 0.059 3.941 15 C -0.147 4.147 16 C 0.032 3.968 17 O -0.411 6.411 18 C 0.043 3.957 19 C 0.021 3.979 20 C 0.050 3.950 21 O -0.400 6.400 22 H 0.265 0.735 23 H 0.045 0.955 24 H 0.022 0.978 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.252 -9.446 0.221 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.557 4.557 8 H 0.044 0.956 9 C -0.042 4.042 10 C 0.054 3.946 11 H 0.059 0.941 12 C -0.094 4.094 13 N -0.269 5.269 14 C -0.069 4.069 15 C -0.166 4.166 16 C -0.044 4.044 17 O -0.331 6.331 18 C -0.034 4.034 19 C -0.106 4.106 20 C -0.027 4.027 21 O -0.319 6.319 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.115 0.885 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.964 -9.718 0.095 22.203 hybrid contribution -0.157 1.114 0.444 1.210 sum 19.807 -8.604 0.539 21.601 Atomic orbital electron populations 1.70086 1.08423 1.28073 1.53015 1.26050 0.95676 1.03587 0.94256 0.85611 0.79370 0.77911 0.79441 1.18483 1.21150 1.17053 1.21276 0.91681 0.92920 1.49790 0.95649 1.19559 0.94682 0.92610 0.97375 1.21989 0.92455 0.94171 0.85950 0.94055 1.22728 0.94982 0.89385 1.02335 1.62307 1.13155 1.17108 1.34303 1.22288 0.85884 0.96123 1.02570 1.24371 0.97623 0.98293 0.96301 1.24415 0.86297 0.97520 0.96177 1.89705 1.48539 1.60390 1.34437 1.24112 0.94144 0.97544 0.87556 1.22922 0.95948 1.01339 0.90422 1.22857 0.93593 0.83707 1.02572 1.88109 1.77619 1.26838 1.39366 0.92574 0.93710 0.95996 0.88540 0.94247 0.89005 0.93992 0.87173 0.89863 0.88175 0.87593 0.88886 0.87256 0.94036 0.93363 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.48 13.96 21.45 0.30 -61.19 16 2 C 0.00 0.01 5.47 84.66 0.46 0.48 16 3 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.52 -31.04 9.44 25.60 0.24 -30.80 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16 9 C 0.00 -0.22 3.76 29.85 0.11 -0.11 16 10 C 0.11 4.61 2.75 30.63 0.08 4.70 16 11 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 12 C 0.03 1.04 4.91 86.31 0.42 1.46 16 13 N -0.54 -13.75 4.88 -895.23 -4.36 -18.11 16 14 C 0.06 1.07 5.20 86.30 0.45 1.52 16 15 C -0.15 -2.29 3.03 -10.10 -0.03 -2.32 16 16 C 0.03 0.53 7.01 72.29 0.51 1.03 16 17 O -0.41 -8.31 12.46 -148.98 -1.86 -10.17 16 18 C 0.04 0.61 8.79 72.29 0.64 1.24 16 19 C 0.02 0.51 4.41 86.31 0.38 0.89 16 20 C 0.05 1.52 7.01 72.01 0.50 2.03 16 21 O -0.40 -17.09 10.23 -148.98 -1.52 -18.61 16 22 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 23 H 0.04 1.97 7.57 -2.39 -0.02 1.95 16 24 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 25 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 0.75 7.81 -2.39 -0.02 0.73 16 29 H 0.11 1.79 8.02 -2.39 -0.02 1.77 16 30 H 0.08 1.30 7.92 -2.38 -0.02 1.28 16 31 H 0.10 1.45 7.23 -2.39 -0.02 1.43 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 34 H 0.11 2.02 5.18 -2.39 -0.01 2.01 16 35 H 0.04 0.99 8.06 -2.38 -0.02 0.97 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -72.34 291.88 -0.82 -73.16 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.97 Total: 8.40 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.77 Total: -19.89 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -4.07 Total: -79.30 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -3.38 Total: -28.78 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -72.34 -0.82 -73.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.168 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds