Wall clock time and date at job start Mon Mar 30 2020 03:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.08998 * 109.50779 * 299.91110 * 9 7 2 11 11 C 1.53105 * 109.50257 * 179.77919 * 9 7 2 12 12 N 1.47016 * 109.25326 * 183.21554 * 11 9 7 13 13 C 1.46909 * 110.99548 * 182.39416 * 12 11 9 14 14 C 1.52998 * 109.46951 * 302.41323 * 13 12 11 15 15 C 1.53002 * 109.46579 * 179.97438 * 14 13 12 16 16 C 1.54033 * 113.81899 * 271.18542 * 15 14 13 17 17 O 1.44182 * 85.51888 * 223.19824 * 16 15 14 18 18 C 1.44181 * 93.33683 * 24.19323 * 17 16 15 19 19 C 1.47013 * 110.75330 * 58.62124 * 12 11 9 20 20 C 1.53096 * 109.25638 * 301.37850 * 19 12 11 21 21 O 1.43014 * 109.25771 * 56.85254 * 20 19 12 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.50836 * 303.15424 * 11 9 7 24 24 H 1.09001 * 109.50207 * 63.28831 * 11 9 7 25 25 H 1.08998 * 109.46851 * 62.41638 * 13 12 11 26 26 H 1.09003 * 109.46712 * 182.40897 * 13 12 11 27 27 H 1.09003 * 109.47140 * 299.99898 * 14 13 12 28 28 H 1.08990 * 109.47163 * 60.00410 * 14 13 12 29 29 H 1.09000 * 112.99883 * 43.17709 * 15 14 13 30 30 H 1.09000 * 113.86605 * 337.34739 * 16 15 14 31 31 H 1.09003 * 113.86325 * 109.04850 * 16 15 14 32 32 H 1.09006 * 113.85963 * 221.65949 * 18 17 16 33 33 H 1.08997 * 113.98064 * 89.97264 * 18 17 16 34 34 H 1.09004 * 109.50330 * 181.44579 * 19 12 11 35 35 H 1.09001 * 109.50751 * 61.31792 * 19 12 11 36 36 H 1.08998 * 109.50849 * 296.91371 * 20 19 12 37 37 H 1.09000 * 109.54061 * 176.80223 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8792 -0.6840 -0.8782 11 6 4.0225 -2.6374 0.0233 12 7 5.4903 -2.6312 0.1072 13 6 6.0257 -3.9986 0.0634 14 6 5.4237 -4.8189 1.2060 15 6 5.9809 -6.2431 1.1598 16 6 5.1605 -7.2038 0.2786 17 8 5.3315 -8.1526 1.3507 18 6 5.5336 -7.1245 2.3412 19 6 5.9399 -1.9279 1.3174 20 6 5.4096 -0.4920 1.2932 21 8 3.9842 -0.5174 1.1799 22 1 -0.4849 0.8401 -0.0004 23 1 3.6108 -3.1626 0.8850 24 1 3.7125 -3.1403 -0.8927 25 1 5.7676 -4.4594 -0.8901 26 1 7.1101 -3.9677 0.1701 27 1 5.6819 -4.3580 2.1594 28 1 4.3395 -4.8497 1.0991 29 1 7.0536 -6.2747 0.9685 30 1 4.1275 -6.8903 0.1278 31 1 5.6607 -7.4892 -0.6468 32 1 6.3298 -7.3471 3.0517 33 1 4.6158 -6.7856 2.8216 34 1 7.0295 -1.9132 1.3461 35 1 5.5589 -2.4419 2.1998 36 1 5.8332 0.0382 0.4402 37 1 5.6924 0.0167 2.2149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261007503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:09 Heat of formation + Delta-G solvation = -72.655423 kcal Electronic energy + Delta-G solvation = -18032.966181 eV Core-core repulsion = 15196.875685 eV Total energy + Delta-G solvation = -2836.090496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.42193 -40.36396 -37.18222 -34.86224 -33.25513 -32.28051 -29.52257 -27.77391 -27.46092 -26.15633 -24.08189 -22.94556 -21.28629 -20.58452 -19.04606 -17.50628 -17.30959 -16.97967 -16.72338 -16.64526 -16.07741 -16.00379 -15.35688 -15.10255 -14.70700 -14.58972 -14.35333 -13.66497 -13.51556 -13.00207 -12.82683 -12.68093 -12.59700 -12.09522 -12.01002 -11.83089 -11.71744 -11.62963 -11.24239 -11.08966 -10.74924 -10.66178 -10.03375 -9.17956 -8.36357 -6.50048 1.39498 1.41986 1.68808 2.43586 2.76787 2.86562 3.00770 3.23687 3.58386 3.77366 4.08395 4.16422 4.19780 4.26461 4.33872 4.39003 4.41233 4.42954 4.52966 4.54725 4.63745 4.73358 4.83028 4.86025 4.97165 5.00430 5.08866 5.14914 5.18228 5.20821 5.35600 5.50808 6.02308 6.15924 6.23362 6.52166 6.81965 7.27750 8.77423 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035169 B = 0.005866 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.963613 B = 4772.210815 C = 5262.434282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.210 1.210 7 C -0.531 4.531 8 H 0.042 0.958 9 C 0.193 3.807 10 H 0.015 0.985 11 C 0.053 3.947 12 N -0.546 5.546 13 C 0.059 3.941 14 C -0.150 4.150 15 C -0.134 4.134 16 C 0.032 3.968 17 O -0.413 6.413 18 C 0.032 3.968 19 C 0.025 3.975 20 C 0.042 3.958 21 O -0.408 6.408 22 H 0.269 0.731 23 H 0.028 0.972 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.083 -8.593 2.755 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.132 1.132 7 C -0.568 4.568 8 H 0.060 0.940 9 C 0.137 3.863 10 H 0.033 0.967 11 C -0.075 4.075 12 N -0.269 5.269 13 C -0.069 4.069 14 C -0.190 4.190 15 C -0.153 4.153 16 C -0.045 4.045 17 O -0.332 6.332 18 C -0.045 4.045 19 C -0.103 4.103 20 C -0.035 4.035 21 O -0.328 6.328 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.139 0.861 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.005 -8.446 2.489 19.149 hybrid contribution -0.821 0.284 0.475 0.990 sum 16.184 -8.162 2.963 18.366 Atomic orbital electron populations 1.70057 1.08434 1.28556 1.50629 1.25931 0.95401 1.03780 0.92068 0.85963 0.81881 0.77210 0.78547 1.20487 1.21988 1.13158 1.21134 0.90095 0.93566 1.52047 0.93987 1.19912 0.92151 0.89526 0.84747 0.96719 1.22411 0.87189 0.97723 1.00188 1.62483 1.08854 1.17209 1.38396 1.22299 1.00312 0.86024 0.98229 1.22236 1.00371 0.95696 1.00650 1.24194 1.02196 0.93676 0.95265 1.24200 1.00057 0.87344 0.92861 1.89635 1.93583 1.29133 1.20855 1.24166 1.01229 0.85990 0.93083 1.22765 1.01504 0.94858 0.91131 1.22758 0.82679 0.96084 1.01934 1.88352 1.20440 1.77196 1.46853 0.92264 0.95408 0.91052 0.90452 0.88500 0.91243 0.93159 0.86061 0.90794 0.87553 0.87445 0.90590 0.87409 0.94408 0.93550 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.03 1.67 5.47 84.66 0.46 2.14 16 3 Si 0.94 45.76 26.99 68.60 1.85 47.61 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.21 -9.56 5.24 99.48 0.52 -9.04 16 7 C -0.53 -31.03 9.38 25.60 0.24 -30.79 16 8 H 0.04 2.67 7.99 -2.91 -0.02 2.65 16 9 C 0.19 9.25 2.14 29.88 0.06 9.31 16 10 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16 11 C 0.05 2.09 4.35 86.32 0.38 2.47 16 12 N -0.55 -16.78 4.94 -895.18 -4.42 -21.20 16 13 C 0.06 1.32 5.37 86.30 0.46 1.78 16 14 C -0.15 -3.27 4.37 30.59 0.13 -3.14 16 15 C -0.13 -2.38 3.90 -10.09 -0.04 -2.42 16 16 C 0.03 0.64 8.77 72.27 0.63 1.27 16 17 O -0.41 -10.07 12.45 -148.98 -1.86 -11.93 16 18 C 0.03 0.61 8.79 72.27 0.64 1.24 16 19 C 0.03 0.71 5.33 86.31 0.46 1.17 16 20 C 0.04 1.42 6.93 72.01 0.50 1.92 16 21 O -0.41 -18.68 7.31 -148.98 -1.09 -19.76 16 22 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.03 1.16 6.40 -2.39 -0.02 1.14 16 24 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 27 H 0.07 1.52 6.61 -2.39 -0.02 1.50 16 28 H 0.05 1.36 6.11 -2.39 -0.01 1.35 16 29 H 0.12 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.07 1.60 7.89 -2.39 -0.02 1.58 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.50 8.10 -2.39 -0.02 1.49 16 34 H 0.11 2.25 8.12 -2.38 -0.02 2.23 16 35 H 0.04 1.08 6.59 -2.39 -0.02 1.07 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -69.41 288.68 -0.43 -69.85 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.85 Total: 9.42 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 3.93 Total: -15.04 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -4.12 Total: -80.14 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -2.94 Total: -31.69 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.85 Total: 47.61 kcal Total: -69.41 -0.43 -69.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.806 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds