Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86795 * 119.99701 * 2 1 4 4 H 1.48508 * 109.46876 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47276 * 299.99725 * 3 2 1 6 6 H 1.48504 * 109.47454 * 60.00301 * 3 2 1 7 7 C 1.37871 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00463 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50626 * 59.90925 * 9 7 2 11 11 C 1.53093 * 109.51106 * 180.02562 * 9 7 2 12 12 N 1.47009 * 109.26071 * 176.78442 * 11 9 7 13 13 C 1.46894 * 111.00295 * 177.60644 * 12 11 9 14 14 C 1.53005 * 109.47005 * 57.58828 * 13 12 11 15 15 C 1.53002 * 109.46856 * 180.02562 * 14 13 12 16 16 C 1.54034 * 113.81904 * 271.18388 * 15 14 13 17 17 O 1.44174 * 85.52052 * 223.20069 * 16 15 14 18 18 C 1.44170 * 93.34085 * 24.19268 * 17 16 15 19 19 C 1.47016 * 110.75376 * 301.38357 * 12 11 9 20 20 C 1.53103 * 109.29298 * 58.59374 * 19 12 11 21 21 O 1.43015 * 109.50511 * 299.78713 * 9 7 2 22 22 H 0.96996 * 119.99440 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.50838 * 56.84875 * 11 9 7 24 24 H 1.09005 * 109.53925 * 296.73752 * 11 9 7 25 25 H 1.09008 * 109.47347 * 177.58737 * 13 12 11 26 26 H 1.09004 * 109.47299 * 297.59005 * 13 12 11 27 27 H 1.08998 * 109.47003 * 299.99544 * 14 13 12 28 28 H 1.08997 * 109.47145 * 60.00233 * 14 13 12 29 29 H 1.08998 * 113.00243 * 43.17736 * 15 14 13 30 30 H 1.09003 * 113.86054 * 337.35282 * 16 15 14 31 31 H 1.09004 * 113.86101 * 109.04870 * 16 15 14 32 32 H 1.09004 * 113.86745 * 221.66483 * 18 17 16 33 33 H 1.08999 * 113.98692 * 89.96777 * 18 17 16 34 34 H 1.09002 * 109.50934 * 178.55099 * 19 12 11 35 35 H 1.09003 * 109.50733 * 298.63693 * 19 12 11 36 36 H 1.08998 * 109.50917 * 63.10882 * 20 19 12 37 37 H 1.08998 * 109.50376 * 183.24332 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6234 -2.5570 -0.8887 11 6 2.2452 -3.6634 0.0018 12 7 1.5063 -4.9319 0.0797 13 6 2.4224 -6.0790 0.0262 14 6 3.4367 -5.9752 1.1670 15 6 4.3913 -7.1696 1.1109 16 6 3.8993 -8.3967 1.9014 17 8 5.2598 -8.5009 2.3670 18 6 5.5323 -7.1029 2.1436 19 6 0.6754 -4.9773 1.2917 20 6 -0.3030 -3.7998 1.2786 21 8 0.4320 -2.5776 1.1702 22 1 -0.4849 0.8401 -0.0004 23 1 2.9082 -3.5750 0.8625 24 1 2.8342 -3.6410 -0.9152 25 1 1.8537 -7.0033 0.1287 26 1 2.9483 -6.0799 -0.9286 27 1 4.0054 -5.0510 1.0645 28 1 2.9109 -5.9743 2.1218 29 1 4.7259 -7.4003 0.0996 30 1 3.1816 -8.1570 2.6861 31 1 3.5835 -9.2289 1.2721 32 1 6.5118 -6.9089 1.7064 33 1 5.3143 -6.4664 3.0011 34 1 0.1179 -5.9136 1.3159 35 1 1.3134 -4.9106 2.1730 36 1 -0.9766 -3.8957 0.4270 37 1 -0.8813 -3.7969 2.2025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261007504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = -77.926448 kcal Electronic energy + Delta-G solvation = -17928.981495 eV Core-core repulsion = 15092.662431 eV Total energy + Delta-G solvation = -2836.319065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40065 -40.20652 -37.00716 -34.80375 -33.19696 -31.95319 -29.44690 -27.64093 -27.38120 -26.10547 -24.12654 -23.11792 -21.24950 -20.51214 -18.76067 -17.37075 -17.26712 -16.76241 -16.60317 -16.57583 -16.26625 -15.87456 -15.38162 -14.88430 -14.75772 -14.50774 -13.92265 -13.61961 -13.35021 -12.95844 -12.84884 -12.70435 -12.58814 -12.25254 -12.10317 -11.88497 -11.77126 -11.41549 -11.24349 -10.94744 -10.66639 -10.60244 -9.98152 -9.12435 -8.16793 -6.38137 1.41752 1.42799 1.55456 2.39937 2.77598 3.00518 3.08011 3.26409 3.72608 3.79649 4.07285 4.17450 4.24214 4.32016 4.36121 4.41566 4.43402 4.52087 4.52920 4.63631 4.66041 4.74500 4.87572 4.94039 4.97088 5.04886 5.12336 5.16653 5.18254 5.33144 5.41246 5.71649 5.99167 6.22754 6.24338 6.64448 7.13182 7.38820 8.92439 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.005475 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.343822 B = 5113.064960 C = 5668.439304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.221 3.779 10 H -0.019 1.019 11 C 0.048 3.952 12 N -0.550 5.550 13 C 0.059 3.941 14 C -0.148 4.148 15 C -0.140 4.140 16 C 0.038 3.962 17 O -0.412 6.412 18 C 0.032 3.968 19 C 0.030 3.970 20 C 0.048 3.952 21 O -0.398 6.398 22 H 0.262 0.738 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -14.175 2.468 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.590 4.590 8 H 0.086 0.914 9 C 0.165 3.835 10 H -0.002 1.002 11 C -0.080 4.080 12 N -0.274 5.274 13 C -0.069 4.069 14 C -0.187 4.187 15 C -0.159 4.159 16 C -0.038 4.038 17 O -0.331 6.331 18 C -0.044 4.044 19 C -0.097 4.097 20 C -0.030 4.030 21 O -0.318 6.318 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.994 -14.175 2.277 15.558 hybrid contribution 0.482 1.059 0.441 1.244 sum 6.476 -13.117 2.718 14.879 Atomic orbital electron populations 1.70199 1.07834 1.27477 1.48193 1.25974 0.95641 1.03220 0.93056 0.85403 0.79173 0.78606 0.77774 1.18424 1.20022 1.20595 1.21406 0.93160 0.91110 1.53354 0.91411 1.19591 0.87460 0.92657 0.83801 1.00157 1.22585 0.95997 0.89364 1.00008 1.62434 1.23875 1.02833 1.38238 1.22298 0.92956 0.93357 0.98271 1.22218 0.98002 0.98295 1.00223 1.24212 0.95503 0.95078 1.01088 1.24213 0.84737 0.98235 0.96649 1.89631 1.27836 1.26671 1.88992 1.24144 1.00305 0.82423 0.97555 1.22715 0.96147 0.99744 0.91144 1.22629 0.94036 0.85650 1.00641 1.88291 1.61005 1.36562 1.45912 0.92867 0.95032 0.91046 0.89022 0.90392 0.92399 0.91823 0.87006 0.89694 0.87600 0.88148 0.90064 0.87924 0.94388 0.95356 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.82 12.85 21.45 0.28 -54.54 16 2 C 0.02 1.35 5.40 84.65 0.46 1.80 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.55 -31.55 8.80 25.60 0.23 -31.33 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.22 11.84 2.66 29.88 0.08 11.92 16 10 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 11 C 0.05 2.04 4.35 86.31 0.38 2.41 16 12 N -0.55 -19.03 4.94 -895.19 -4.42 -23.45 16 13 C 0.06 1.45 5.37 86.31 0.46 1.92 16 14 C -0.15 -3.39 4.37 30.60 0.13 -3.25 16 15 C -0.14 -2.57 3.90 -10.09 -0.04 -2.61 16 16 C 0.04 0.67 8.77 72.27 0.63 1.30 16 17 O -0.41 -9.56 12.45 -148.98 -1.86 -11.41 16 18 C 0.03 0.63 8.79 72.27 0.64 1.26 16 19 C 0.03 1.00 5.33 86.32 0.46 1.46 16 20 C 0.05 1.98 7.01 72.02 0.51 2.48 16 21 O -0.40 -21.50 9.87 -148.98 -1.47 -22.97 16 22 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.03 1.33 6.40 -2.39 -0.02 1.32 16 24 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 25 H 0.09 1.87 8.11 -2.38 -0.02 1.85 16 26 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.06 1.55 6.42 -2.39 -0.02 1.53 16 28 H 0.06 1.51 6.30 -2.39 -0.02 1.49 16 29 H 0.11 1.87 8.13 -2.39 -0.02 1.85 16 30 H 0.08 1.41 7.89 -2.39 -0.02 1.39 16 31 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.08 1.54 8.10 -2.39 -0.02 1.53 16 34 H 0.10 2.65 8.12 -2.39 -0.02 2.63 16 35 H 0.04 1.23 6.59 -2.39 -0.02 1.22 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -68.40 294.80 -0.48 -68.88 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.03 Total: 10.15 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 3.93 Total: -12.63 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -4.14 Total: -77.99 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -3.33 Total: -34.38 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.40 -0.48 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.045 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds