Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47417 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47119 * 120.00259 * 3 2 1 6 6 H 1.48507 * 109.47166 * 239.99715 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.27147 * 2 1 3 8 8 H 1.08004 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47667 * 185.05640 * 9 7 2 11 11 H 1.09001 * 109.50721 * 183.55915 * 10 9 7 12 12 C 1.53100 * 109.50598 * 63.47310 * 10 9 7 13 13 O 1.43013 * 109.25947 * 183.21951 * 12 10 9 14 14 C 1.43018 * 113.73775 * 58.66996 * 13 12 10 15 15 C 1.53096 * 109.25731 * 301.32755 * 14 13 12 16 16 N 1.47008 * 109.50668 * 303.64964 * 10 9 7 17 17 C 1.46904 * 111.00067 * 302.32268 * 16 10 9 18 18 C 1.53001 * 109.47311 * 164.97428 * 17 16 10 19 19 C 1.54036 * 113.81551 * 273.50809 * 18 17 16 20 20 O 1.44455 * 85.42457 * 223.23656 * 19 18 17 21 21 C 1.44178 * 93.37783 * 24.08885 * 20 19 18 22 22 H 0.97007 * 119.99869 * 359.72758 * 1 2 3 23 23 H 1.09001 * 109.47224 * 305.05804 * 9 7 2 24 24 H 1.09002 * 109.47120 * 65.05554 * 9 7 2 25 25 H 1.09004 * 109.50289 * 303.15529 * 12 10 9 26 26 H 1.08993 * 109.50373 * 63.23744 * 12 10 9 27 27 H 1.08998 * 109.50957 * 61.26608 * 14 13 12 28 28 H 1.09004 * 109.50264 * 181.39566 * 14 13 12 29 29 H 1.08998 * 109.50445 * 176.78770 * 15 14 13 30 30 H 1.08997 * 109.50784 * 296.91475 * 15 14 13 31 31 H 1.08998 * 109.47429 * 284.97532 * 17 16 10 32 32 H 1.09002 * 109.47085 * 44.97518 * 17 16 10 33 33 H 1.09004 * 113.00026 * 45.33466 * 18 17 16 34 34 H 1.08996 * 113.86510 * 337.34302 * 19 18 17 35 35 H 1.08997 * 113.86255 * 109.05319 * 19 18 17 36 36 H 1.09002 * 113.86308 * 221.76817 * 21 20 19 37 37 H 1.09007 * 113.98074 * 90.07446 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0052 9 6 1.2511 -2.4990 -0.0124 10 6 2.2404 -3.6598 0.1093 11 1 1.7023 -4.6053 0.0410 12 6 2.9610 -3.5780 1.4576 13 8 3.9370 -4.6205 1.5348 14 6 4.9167 -4.5702 0.4941 15 6 4.2158 -4.6621 -0.8639 16 7 3.2290 -3.5781 -0.9756 17 6 2.5718 -3.5966 -2.2893 18 6 3.5628 -3.1401 -3.3618 19 6 3.6151 -1.6123 -3.5505 20 8 3.6279 -1.9036 -4.9653 21 6 2.9959 -3.1880 -4.7933 22 1 -0.4850 0.8401 0.0040 23 1 0.5579 -2.5228 0.8284 24 1 0.6944 -2.5924 -0.9449 25 1 3.4542 -2.6102 1.5486 26 1 2.2377 -3.6952 2.2645 27 1 5.4667 -3.6313 0.5570 28 1 5.6079 -5.4058 0.6043 29 1 4.9530 -4.5669 -1.6611 30 1 3.7100 -5.6239 -0.9481 31 1 2.2351 -4.6089 -2.5129 32 1 1.7148 -2.9232 -2.2763 33 1 4.5436 -3.6050 -3.2611 34 1 2.7161 -1.0954 -3.2148 35 1 4.5341 -1.1540 -3.1851 36 1 3.4248 -3.9769 -5.4113 37 1 1.9072 -3.1556 -4.8378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = -51.458512 kcal Electronic energy + Delta-G solvation = -18655.374786 eV Core-core repulsion = 15820.203457 eV Total energy + Delta-G solvation = -2835.171329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08776 -38.94217 -35.52994 -33.32052 -31.34537 -30.52539 -27.59281 -26.37688 -26.07540 -23.95950 -23.12825 -21.63852 -19.63088 -19.20549 -16.49313 -16.14881 -15.81237 -15.65144 -15.34595 -15.06643 -14.62660 -14.34092 -14.06849 -13.43429 -13.32982 -12.71533 -12.29279 -12.13871 -11.93296 -11.45512 -11.14506 -11.00046 -10.81254 -10.71827 -10.51943 -10.24342 -10.16810 -9.87457 -9.47659 -9.30341 -9.18118 -8.86503 -8.32677 -7.63844 -5.98547 -3.97556 3.34752 3.40136 3.42709 4.03405 4.23388 4.37747 4.48450 4.80560 5.12899 5.31824 5.36992 5.43419 5.51313 5.59255 5.63965 5.70701 5.78376 5.83505 5.92690 6.03824 6.06971 6.15821 6.21671 6.32077 6.42750 6.55061 6.62898 6.65767 6.72823 7.38092 7.50029 7.65203 7.72363 7.81747 8.02189 8.45606 9.10097 9.65554 11.13005 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.011933 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.369780 B = 2345.779040 C = 3606.782881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.886 3.114 4 H -0.291 1.291 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.060 3.940 11 H 0.020 0.980 12 C 0.074 3.926 13 O -0.400 6.400 14 C 0.068 3.932 15 C 0.015 3.985 16 N -0.509 5.509 17 C 0.059 3.941 18 C -0.144 4.144 19 C 0.053 3.947 20 O -0.395 6.395 21 C 0.038 3.962 22 H 0.259 0.741 23 H 0.026 0.974 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.023 0.977 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.762 -8.171 -3.848 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.532 4.532 8 H 0.085 0.915 9 C -0.011 4.011 10 C -0.048 4.048 11 H 0.038 0.962 12 C -0.003 4.003 13 O -0.319 6.319 14 C -0.009 4.009 15 C -0.114 4.114 16 N -0.234 5.234 17 C -0.069 4.069 18 C -0.163 4.163 19 C -0.023 4.023 20 O -0.315 6.315 21 C -0.040 4.040 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.946 -7.594 -3.869 10.995 hybrid contribution -0.084 0.264 -0.186 0.334 sum 6.862 -7.330 -4.055 10.829 Atomic orbital electron populations 1.69945 1.06013 1.26556 1.51548 1.25006 0.94699 0.99037 0.95847 0.86757 0.79607 0.83562 0.78666 1.21658 1.20424 1.20183 1.21090 0.93429 0.89664 1.49033 0.91536 1.19221 0.92896 0.91585 0.97390 1.22397 0.93092 0.98730 0.90571 0.96177 1.22773 0.90236 0.90733 0.96516 1.87880 1.41398 1.52909 1.49701 1.22510 0.90694 1.01399 0.86336 1.22813 0.96809 0.93288 0.98485 1.62067 1.16132 1.42965 1.02242 1.22234 0.97415 0.99379 0.87900 1.24254 1.00227 0.97668 0.94103 1.24040 1.03347 0.95667 0.79220 1.89643 1.79757 1.35233 1.26828 1.23904 0.98148 0.86672 0.95236 0.93123 0.95573 0.96485 0.90874 0.89290 0.92626 0.89695 0.90635 0.95184 0.95858 0.88099 0.88857 0.88677 0.89619 0.90005 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.49 -12.63 7.86 -34.45 -0.27 -12.90 16 8 H 0.07 1.71 6.89 -52.48 -0.36 1.35 16 9 C 0.03 0.62 4.24 -27.89 -0.12 0.50 16 10 C 0.06 1.20 2.25 -67.60 -0.15 1.04 16 11 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 12 C 0.07 1.41 6.14 37.21 0.23 1.64 16 13 O -0.40 -7.20 10.83 -35.23 -0.38 -7.58 16 14 C 0.07 1.02 7.01 37.21 0.26 1.28 16 15 C 0.01 0.22 5.48 -3.71 -0.02 0.20 16 16 N -0.51 -9.18 3.77 -226.34 -0.85 -10.03 16 17 C 0.06 0.99 4.64 -3.82 -0.02 0.97 16 18 C -0.14 -2.17 3.98 -89.54 -0.36 -2.53 16 19 C 0.05 0.92 8.79 37.64 0.33 1.25 16 20 O -0.40 -6.80 12.46 -35.23 -0.44 -7.24 16 21 C 0.04 0.53 8.79 37.64 0.33 0.86 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.02 0.43 6.27 -51.93 -0.33 0.10 16 25 H 0.07 1.51 6.87 -51.93 -0.36 1.16 16 26 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.01 6.51 -51.93 -0.34 0.67 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.10 1.98 5.37 -51.93 -0.28 1.70 16 33 H 0.09 1.32 6.56 -51.93 -0.34 0.97 16 34 H 0.10 1.83 7.92 -51.93 -0.41 1.42 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -28.54 291.84 -7.21 -35.75 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.77 Total: -0.01 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.12 Total: -6.31 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.12 Total: -35.06 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.82 Total: -14.82 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.54 -7.21 -35.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.709 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds