Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47417 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47119 * 120.00259 * 3 2 1 6 6 H 1.48507 * 109.47166 * 239.99715 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.27147 * 2 1 3 8 8 H 1.08004 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47667 * 185.05640 * 9 7 2 11 11 H 1.09001 * 109.50721 * 183.55915 * 10 9 7 12 12 C 1.53100 * 109.50598 * 63.47310 * 10 9 7 13 13 O 1.43013 * 109.25947 * 183.21951 * 12 10 9 14 14 C 1.43018 * 113.73775 * 58.66996 * 13 12 10 15 15 C 1.53096 * 109.25731 * 301.32755 * 14 13 12 16 16 N 1.47008 * 109.50668 * 303.64964 * 10 9 7 17 17 C 1.46904 * 111.00067 * 302.32268 * 16 10 9 18 18 C 1.53001 * 109.47311 * 164.97428 * 17 16 10 19 19 C 1.54036 * 113.81551 * 273.50809 * 18 17 16 20 20 O 1.44455 * 85.42457 * 223.23656 * 19 18 17 21 21 C 1.44178 * 93.37783 * 24.08885 * 20 19 18 22 22 H 0.97007 * 119.99869 * 359.72758 * 1 2 3 23 23 H 1.09001 * 109.47224 * 305.05804 * 9 7 2 24 24 H 1.09002 * 109.47120 * 65.05554 * 9 7 2 25 25 H 1.09004 * 109.50289 * 303.15529 * 12 10 9 26 26 H 1.08993 * 109.50373 * 63.23744 * 12 10 9 27 27 H 1.08998 * 109.50957 * 61.26608 * 14 13 12 28 28 H 1.09004 * 109.50264 * 181.39566 * 14 13 12 29 29 H 1.08998 * 109.50445 * 176.78770 * 15 14 13 30 30 H 1.08997 * 109.50784 * 296.91475 * 15 14 13 31 31 H 1.08998 * 109.47429 * 284.97532 * 17 16 10 32 32 H 1.09002 * 109.47085 * 44.97518 * 17 16 10 33 33 H 1.09004 * 113.00026 * 45.33466 * 18 17 16 34 34 H 1.08996 * 113.86510 * 337.34302 * 19 18 17 35 35 H 1.08997 * 113.86255 * 109.05319 * 19 18 17 36 36 H 1.09002 * 113.86308 * 221.76817 * 21 20 19 37 37 H 1.09007 * 113.98074 * 90.07446 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0052 9 6 1.2511 -2.4990 -0.0124 10 6 2.2404 -3.6598 0.1093 11 1 1.7023 -4.6053 0.0410 12 6 2.9610 -3.5780 1.4576 13 8 3.9370 -4.6205 1.5348 14 6 4.9167 -4.5702 0.4941 15 6 4.2158 -4.6621 -0.8639 16 7 3.2290 -3.5781 -0.9756 17 6 2.5718 -3.5966 -2.2893 18 6 3.5628 -3.1401 -3.3618 19 6 3.6151 -1.6123 -3.5505 20 8 3.6279 -1.9036 -4.9653 21 6 2.9959 -3.1880 -4.7933 22 1 -0.4850 0.8401 0.0040 23 1 0.5579 -2.5228 0.8284 24 1 0.6944 -2.5924 -0.9449 25 1 3.4542 -2.6102 1.5486 26 1 2.2377 -3.6952 2.2645 27 1 5.4667 -3.6313 0.5570 28 1 5.6079 -5.4058 0.6043 29 1 4.9530 -4.5669 -1.6611 30 1 3.7100 -5.6239 -0.9481 31 1 2.2351 -4.6089 -2.5129 32 1 1.7148 -2.9232 -2.2763 33 1 4.5436 -3.6050 -3.2611 34 1 2.7161 -1.0954 -3.2148 35 1 4.5341 -1.1540 -3.1851 36 1 3.4248 -3.9769 -5.4113 37 1 1.9072 -3.1556 -4.8378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = -71.337967 kcal Electronic energy + Delta-G solvation = -18656.236823 eV Core-core repulsion = 15820.203457 eV Total energy + Delta-G solvation = -2836.033367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39210 -40.33628 -36.97905 -35.17264 -33.09136 -31.81381 -29.19109 -27.88555 -27.35834 -25.75465 -24.50130 -23.13612 -20.93604 -20.75594 -18.32151 -17.52690 -17.23450 -17.01010 -16.67541 -16.49502 -16.36234 -15.82636 -15.59140 -14.80758 -14.70140 -14.36587 -13.86282 -13.56812 -13.42771 -13.04338 -12.91811 -12.64151 -12.43436 -12.26494 -12.08398 -11.75846 -11.55138 -11.31500 -11.18651 -11.06655 -10.59514 -10.54771 -10.26208 -9.05675 -8.08252 -6.11285 1.44227 1.45162 1.51658 2.47927 2.77497 2.91019 3.04887 3.27694 3.53234 3.88671 4.07205 4.13481 4.29447 4.32166 4.36603 4.40640 4.48662 4.52618 4.59135 4.73253 4.75878 4.83203 4.88110 4.94332 5.01933 5.16596 5.22108 5.23900 5.30585 5.51663 5.58160 5.89316 6.17806 6.26923 6.31957 6.48499 7.02507 7.54799 9.03679 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.011933 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.369780 B = 2345.779040 C = 3606.782881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.003 3.997 3 Si 0.942 3.058 4 H -0.294 1.294 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.482 4.482 8 H 0.067 0.933 9 C 0.034 3.966 10 C 0.070 3.930 11 H 0.022 0.978 12 C 0.082 3.918 13 O -0.406 6.406 14 C 0.061 3.939 15 C 0.017 3.983 16 N -0.524 5.524 17 C 0.063 3.937 18 C -0.129 4.129 19 C 0.047 3.953 20 O -0.412 6.412 21 C 0.041 3.959 22 H 0.257 0.743 23 H -0.002 1.002 24 H -0.001 1.001 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 -9.441 -4.546 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.194 4.194 3 Si 0.769 3.231 4 H -0.220 1.220 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.521 4.521 8 H 0.085 0.915 9 C -0.003 4.003 10 C -0.039 4.039 11 H 0.040 0.960 12 C 0.005 3.995 13 O -0.325 6.325 14 C -0.016 4.016 15 C -0.111 4.111 16 N -0.249 5.249 17 C -0.064 4.064 18 C -0.148 4.148 19 C -0.030 4.030 20 O -0.332 6.332 21 C -0.035 4.035 22 H 0.066 0.934 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.120 0.880 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.135 -8.879 -4.573 13.535 hybrid contribution -0.742 0.592 -0.002 0.949 sum 8.393 -8.287 -4.575 12.651 Atomic orbital electron populations 1.70073 1.07471 1.27024 1.53447 1.25718 0.95327 1.02249 0.96087 0.85841 0.78427 0.79849 0.78979 1.22022 1.19664 1.19464 1.21281 0.93385 0.90309 1.47092 0.91488 1.19043 0.93176 0.92910 0.95208 1.22114 0.92938 0.96745 0.92064 0.96040 1.22544 0.90476 0.90388 0.96044 1.87876 1.41574 1.52053 1.51000 1.22815 0.90377 1.02900 0.85479 1.22911 0.96379 0.92332 0.99491 1.62025 1.16002 1.44952 1.01919 1.22121 0.96836 0.99388 0.88090 1.24188 1.00755 0.95770 0.94090 1.23924 1.02065 0.97260 0.79738 1.89628 1.80123 1.36888 1.26536 1.24115 0.98421 0.86153 0.94858 0.93437 0.98328 0.98320 0.92695 0.89246 0.92911 0.86079 0.87969 0.94590 0.94231 0.91668 0.86718 0.91779 0.89222 0.86613 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 13.29 21.44 0.28 -54.97 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.94 43.70 29.54 68.60 2.03 45.73 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.48 -25.10 7.86 25.60 0.20 -24.90 16 8 H 0.07 3.44 6.89 -2.91 -0.02 3.42 16 9 C 0.03 1.65 4.24 29.85 0.13 1.78 16 10 C 0.07 2.77 2.25 44.93 0.10 2.87 16 11 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 12 C 0.08 3.11 6.14 72.02 0.44 3.55 16 13 O -0.41 -13.74 10.83 -148.98 -1.61 -15.36 16 14 C 0.06 1.63 7.01 72.01 0.50 2.13 16 15 C 0.02 0.45 5.48 86.31 0.47 0.92 16 16 N -0.52 -18.06 3.77 -870.00 -3.28 -21.35 16 17 C 0.06 2.06 4.64 86.30 0.40 2.46 16 18 C -0.13 -3.61 3.98 -10.09 -0.04 -3.65 16 19 C 0.05 1.57 8.79 72.30 0.64 2.21 16 20 O -0.41 -13.54 12.46 -148.98 -1.86 -15.40 16 21 C 0.04 1.05 8.79 72.30 0.64 1.69 16 22 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 23 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.00 -0.07 6.27 -2.39 -0.01 -0.08 16 25 H 0.05 2.26 6.87 -2.38 -0.02 2.25 16 26 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.10 2.23 6.51 -2.39 -0.02 2.21 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 32 H 0.06 2.61 5.37 -2.39 -0.01 2.60 16 33 H 0.11 2.75 6.56 -2.38 -0.02 2.74 16 34 H 0.06 2.55 7.92 -2.39 -0.02 2.53 16 35 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.12 2.19 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.00 8.10 -2.38 -0.02 1.98 16 Total: -1.00 -61.73 291.84 0.54 -61.19 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.04 Total: 10.50 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.94 Total: -10.34 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.00 Total: -76.32 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -3.47 Total: -30.76 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -61.73 0.54 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.150 kcal (2) G-P(sol) polarization free energy of solvation -61.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds