Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46745 * 2 1 4 4 C 1.52990 * 109.47209 * 120.00297 * 2 1 3 5 5 H 1.08998 * 109.18571 * 304.98268 * 4 2 1 6 6 C 1.53035 * 109.15124 * 64.26910 * 4 2 1 7 7 O 1.43336 * 108.91204 * 30.98242 * 6 4 2 8 8 C 1.42525 * 113.73977 * 59.98254 * 7 6 4 9 9 C 1.53207 * 108.20075 * 32.63680 * 8 7 6 10 10 C 1.50216 * 109.64450 * 269.17051 * 9 8 7 11 11 O 1.21290 * 118.71666 * 230.80241 * 10 9 8 12 12 N 1.33295 * 122.60107 * 51.05970 * 10 9 8 13 13 C 1.46505 * 117.43977 * 172.95146 * 12 10 9 14 14 C 1.50700 * 109.46958 * 269.72975 * 13 12 10 15 15 H 1.08005 * 119.99818 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00327 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00423 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46813 * 269.99726 * 18 16 14 20 20 H 1.48502 * 109.47332 * 150.00142 * 18 16 14 21 21 H 1.48495 * 109.47137 * 29.99413 * 18 16 14 22 22 H 1.08997 * 109.47002 * 299.99605 * 1 2 3 23 23 H 1.08997 * 109.47484 * 59.99477 * 1 2 3 24 24 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46556 * 240.00249 * 2 1 3 26 26 H 1.09003 * 109.46665 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47557 * 300.00478 * 3 2 1 28 28 H 1.09001 * 109.47390 * 60.00760 * 3 2 1 29 29 H 1.08994 * 109.56392 * 150.81615 * 6 4 2 30 30 H 1.09001 * 109.55683 * 271.15776 * 6 4 2 31 31 H 1.09000 * 109.72006 * 152.31738 * 8 7 6 32 32 H 1.09001 * 109.71054 * 272.96684 * 8 7 6 33 33 H 1.09002 * 109.42133 * 29.40503 * 9 8 7 34 34 H 1.09001 * 109.41327 * 149.21092 * 9 8 7 35 35 H 1.09003 * 109.46912 * 149.73468 * 13 12 10 36 36 H 1.08994 * 109.47568 * 29.73113 * 13 12 10 37 37 H 0.97000 * 120.00317 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6030 -0.2581 2.1337 6 6 1.6157 -2.1904 1.1890 7 8 1.5575 -2.6014 -0.1829 8 6 2.8002 -2.4827 -0.8706 9 6 3.9287 -2.7465 0.1314 10 6 4.3572 -1.4521 0.7618 11 8 5.5374 -1.1724 0.7739 12 7 3.4922 -0.6008 1.3129 13 6 4.0433 0.5493 2.0340 14 6 4.2424 0.1854 3.4828 15 1 3.9847 -0.8038 3.8314 16 6 4.7536 1.1152 4.3632 17 7 5.0670 2.3199 3.9387 18 14 5.0011 0.6640 6.1589 19 1 3.7691 0.9839 6.9239 20 1 6.1417 1.4380 6.7112 21 1 5.2889 -0.7887 6.2691 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.3425 -2.8024 1.7229 30 1 0.6330 -2.3053 1.6464 31 1 2.8457 -3.2148 -1.6769 32 1 2.8994 -1.4773 -1.2799 33 1 3.5754 -3.4300 0.9036 34 1 4.7764 -3.1943 -0.3872 35 1 3.3516 1.3887 1.9620 36 1 5.0008 0.8289 1.5947 37 1 4.9388 2.5542 3.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -72.552475 kcal Electronic energy + Delta-G solvation = -19091.184535 eV Core-core repulsion = 16255.098504 eV Total energy + Delta-G solvation = -2836.086032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77123 -37.76258 -36.11009 -33.71153 -32.50545 -31.13334 -29.27488 -26.73442 -26.15214 -25.10326 -22.88175 -21.61430 -20.58165 -18.43241 -17.27204 -16.87117 -16.40261 -15.86763 -15.14009 -14.70694 -14.11405 -13.78642 -13.56318 -13.55582 -12.90327 -12.71535 -12.41271 -12.05668 -11.93851 -11.76621 -11.52910 -11.39529 -11.09547 -10.90231 -10.73594 -10.68013 -10.40385 -10.22006 -10.13246 -9.35223 -9.10073 -8.99087 -8.37994 -7.66923 -6.39765 -4.11510 3.29039 3.40125 3.46040 3.60806 3.78086 3.84061 4.51671 4.66099 4.86247 4.94707 5.07376 5.18198 5.31379 5.35073 5.38092 5.46553 5.58169 5.69965 5.76170 5.88423 5.96182 6.01627 6.10059 6.13260 6.17466 6.32539 6.56167 6.65304 6.84504 7.11598 7.18476 7.31403 8.03636 8.33461 8.42563 8.76618 8.95929 9.58098 10.97788 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.008651 C = 0.007843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.237812 B = 3235.827396 C = 3569.304585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.149 4.149 4 C 0.118 3.882 5 H 0.098 0.902 6 C 0.045 3.955 7 O -0.379 6.379 8 C 0.057 3.943 9 C -0.183 4.183 10 C 0.507 3.493 11 O -0.549 6.549 12 N -0.581 5.581 13 C 0.222 3.778 14 C -0.607 4.607 15 H 0.049 0.951 16 C 0.020 3.980 17 N -0.909 5.909 18 Si 1.073 2.927 19 H -0.288 1.288 20 H -0.283 1.283 21 H -0.290 1.290 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 -7.700 -8.129 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.013 3.987 5 H 0.116 0.884 6 C -0.032 4.032 7 O -0.298 6.298 8 C -0.020 4.020 9 C -0.223 4.223 10 C 0.293 3.707 11 O -0.428 6.428 12 N -0.311 5.311 13 C 0.102 3.898 14 C -0.646 4.646 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.545 5.545 18 Si 0.901 3.099 19 H -0.214 1.214 20 H -0.209 1.209 21 H -0.216 1.216 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.857 -7.038 -6.750 13.174 hybrid contribution -0.306 -0.538 -1.229 1.376 sum -9.163 -7.576 -7.980 14.319 Atomic orbital electron populations 1.21768 0.94685 1.01960 1.01336 1.21797 0.96102 0.96763 0.98656 1.21964 1.02050 0.95476 1.01102 1.21629 0.81526 0.96095 0.99491 0.88386 1.23205 1.02909 0.93774 0.83316 1.87951 1.31697 1.86560 1.23562 1.22812 0.82624 1.02046 0.94474 1.22592 1.01354 0.97495 1.00839 1.19731 0.86369 0.85439 0.79152 1.90695 1.17170 1.75926 1.59007 1.47470 1.04615 1.26955 1.52024 1.19586 0.94888 0.83479 0.91859 1.22260 1.47453 1.01067 0.93806 0.93231 1.25782 0.93442 0.93428 1.05781 1.70768 1.45073 1.20005 1.18636 0.83483 0.76871 0.75158 0.74352 1.21442 1.20857 1.21582 0.92940 0.93012 0.91968 0.89882 0.91912 0.93432 0.92443 0.91554 0.87567 0.88914 0.91491 0.88024 0.88097 0.95213 0.94543 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.94 37.16 0.33 -1.35 16 2 C -0.11 -1.66 2.15 -90.62 -0.19 -1.86 16 3 C -0.15 -2.37 7.76 37.16 0.29 -2.09 16 4 C 0.12 1.95 2.11 -68.26 -0.14 1.81 16 5 H 0.10 1.73 7.97 -51.93 -0.41 1.32 16 6 C 0.04 0.62 5.40 37.18 0.20 0.82 16 7 O -0.38 -5.03 9.26 -35.23 -0.33 -5.35 16 8 C 0.06 0.73 6.30 37.26 0.23 0.97 16 9 C -0.18 -2.78 5.43 -28.01 -0.15 -2.93 16 10 C 0.51 10.70 6.78 -11.88 -0.08 10.62 16 11 O -0.55 -14.28 16.15 5.55 0.09 -14.19 16 12 N -0.58 -12.14 1.94 -168.55 -0.33 -12.47 16 13 C 0.22 5.69 2.91 -5.19 -0.02 5.67 16 14 C -0.61 -17.24 9.37 -34.44 -0.32 -17.56 16 15 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 16 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 17 N -0.91 -27.68 13.65 55.43 0.76 -26.92 16 18 Si 1.07 25.62 29.90 -169.99 -5.08 20.53 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.71 6.78 -51.93 -0.35 0.36 16 25 H 0.08 1.21 4.13 -51.93 -0.21 0.99 16 26 H 0.06 1.17 6.15 -51.93 -0.32 0.85 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.95 7.63 -51.93 -0.40 0.56 16 29 H 0.07 0.97 5.54 -51.93 -0.29 0.68 16 30 H 0.11 1.21 8.03 -51.93 -0.42 0.80 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.93 5.20 -51.93 -0.27 0.66 16 33 H 0.10 1.45 6.03 -51.93 -0.31 1.13 16 34 H 0.10 1.42 8.10 -51.93 -0.42 1.00 16 35 H 0.03 0.75 5.64 -51.93 -0.29 0.46 16 36 H 0.04 1.07 6.91 -51.93 -0.36 0.71 16 37 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -33.02 280.54 -5.86 -38.88 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.25 Total: 0.71 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 0.05 Total: -5.42 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.43 Total: -39.39 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.24 Total: -19.54 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.02 -5.86 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.668 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds