Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46745 * 2 1 4 4 C 1.52990 * 109.47209 * 120.00297 * 2 1 3 5 5 H 1.08998 * 109.18571 * 304.98268 * 4 2 1 6 6 C 1.53035 * 109.15124 * 64.26910 * 4 2 1 7 7 O 1.43336 * 108.91204 * 30.98242 * 6 4 2 8 8 C 1.42525 * 113.73977 * 59.98254 * 7 6 4 9 9 C 1.53207 * 108.20075 * 32.63680 * 8 7 6 10 10 C 1.50216 * 109.64450 * 269.17051 * 9 8 7 11 11 O 1.21290 * 118.71666 * 230.80241 * 10 9 8 12 12 N 1.33295 * 122.60107 * 51.05970 * 10 9 8 13 13 C 1.46505 * 117.43977 * 172.95146 * 12 10 9 14 14 C 1.50700 * 109.46958 * 269.72975 * 13 12 10 15 15 H 1.08005 * 119.99818 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00327 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00423 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46813 * 269.99726 * 18 16 14 20 20 H 1.48502 * 109.47332 * 150.00142 * 18 16 14 21 21 H 1.48495 * 109.47137 * 29.99413 * 18 16 14 22 22 H 1.08997 * 109.47002 * 299.99605 * 1 2 3 23 23 H 1.08997 * 109.47484 * 59.99477 * 1 2 3 24 24 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46556 * 240.00249 * 2 1 3 26 26 H 1.09003 * 109.46665 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47557 * 300.00478 * 3 2 1 28 28 H 1.09001 * 109.47390 * 60.00760 * 3 2 1 29 29 H 1.08994 * 109.56392 * 150.81615 * 6 4 2 30 30 H 1.09001 * 109.55683 * 271.15776 * 6 4 2 31 31 H 1.09000 * 109.72006 * 152.31738 * 8 7 6 32 32 H 1.09001 * 109.71054 * 272.96684 * 8 7 6 33 33 H 1.09002 * 109.42133 * 29.40503 * 9 8 7 34 34 H 1.09001 * 109.41327 * 149.21092 * 9 8 7 35 35 H 1.09003 * 109.46912 * 149.73468 * 13 12 10 36 36 H 1.08994 * 109.47568 * 29.73113 * 13 12 10 37 37 H 0.97000 * 120.00317 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6030 -0.2581 2.1337 6 6 1.6157 -2.1904 1.1890 7 8 1.5575 -2.6014 -0.1829 8 6 2.8002 -2.4827 -0.8706 9 6 3.9287 -2.7465 0.1314 10 6 4.3572 -1.4521 0.7618 11 8 5.5374 -1.1724 0.7739 12 7 3.4922 -0.6008 1.3129 13 6 4.0433 0.5493 2.0340 14 6 4.2424 0.1854 3.4828 15 1 3.9847 -0.8038 3.8314 16 6 4.7536 1.1152 4.3632 17 7 5.0670 2.3199 3.9387 18 14 5.0011 0.6640 6.1589 19 1 3.7691 0.9839 6.9239 20 1 6.1417 1.4380 6.7112 21 1 5.2889 -0.7887 6.2691 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.3425 -2.8024 1.7229 30 1 0.6330 -2.3053 1.6464 31 1 2.8457 -3.2148 -1.6769 32 1 2.8994 -1.4773 -1.2799 33 1 3.5754 -3.4300 0.9036 34 1 4.7764 -3.1943 -0.3872 35 1 3.3516 1.3887 1.9620 36 1 5.0008 0.8289 1.5947 37 1 4.9388 2.5542 3.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -95.244047 kcal Electronic energy + Delta-G solvation = -19092.168516 eV Core-core repulsion = 16255.098504 eV Total energy + Delta-G solvation = -2837.070012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19007 -39.28158 -37.52758 -35.55781 -34.31299 -32.42173 -30.72211 -28.16448 -27.81584 -26.38624 -24.93475 -22.84338 -21.97470 -19.96702 -19.16105 -18.19772 -17.86783 -17.36630 -16.49744 -16.17556 -15.75407 -15.58386 -15.08553 -14.92309 -14.45689 -14.04515 -13.88835 -13.69746 -13.35871 -13.25267 -12.94862 -12.71870 -12.66050 -12.52058 -12.16934 -12.06467 -12.00364 -11.78779 -11.52282 -11.11126 -10.73897 -10.61754 -10.45298 -9.51641 -8.71757 -6.47000 1.46311 1.56903 1.64790 1.74143 2.18157 2.51580 2.76801 3.08204 3.37118 3.63515 3.76250 3.87191 3.99828 4.13548 4.20115 4.31326 4.43561 4.52789 4.66440 4.71883 4.74713 4.80171 4.87033 4.89857 4.97638 5.02157 5.07043 5.19259 5.33132 5.43029 5.55272 5.81190 6.01784 6.10745 6.42349 6.70885 7.23024 7.35831 8.63225 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.008651 C = 0.007843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.237812 B = 3235.827396 C = 3569.304585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.108 3.892 5 H 0.084 0.916 6 C 0.053 3.947 7 O -0.369 6.369 8 C 0.061 3.939 9 C -0.169 4.169 10 C 0.493 3.507 11 O -0.612 6.612 12 N -0.579 5.579 13 C 0.238 3.762 14 C -0.617 4.617 15 H 0.045 0.955 16 C -0.032 4.032 17 N -0.931 5.931 18 Si 1.121 2.879 19 H -0.262 1.262 20 H -0.283 1.283 21 H -0.277 1.277 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.028 0.972 36 H -0.011 1.011 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 -9.789 -8.375 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.203 4.203 4 C 0.005 3.995 5 H 0.102 0.898 6 C -0.024 4.024 7 O -0.288 6.288 8 C -0.015 4.015 9 C -0.209 4.209 10 C 0.282 3.718 11 O -0.495 6.495 12 N -0.308 5.308 13 C 0.116 3.884 14 C -0.656 4.656 15 H 0.064 0.936 16 C -0.230 4.230 17 N -0.568 5.568 18 Si 0.942 3.058 19 H -0.187 1.187 20 H -0.209 1.209 21 H -0.203 1.203 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.046 0.954 36 H 0.007 0.993 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.238 -9.146 -7.029 16.105 hybrid contribution 0.425 0.153 -1.216 1.297 sum -10.813 -8.993 -8.245 16.303 Atomic orbital electron populations 1.21713 0.91937 1.03151 1.02107 1.21790 0.98181 0.95090 0.97727 1.21917 0.99573 0.97222 1.01608 1.21976 0.78532 0.98957 1.00038 0.89805 1.23203 1.04351 0.90933 0.83922 1.87980 1.31631 1.86114 1.23059 1.22915 0.81349 1.02759 0.94447 1.22559 1.02985 0.93701 1.01632 1.20910 0.85501 0.86985 0.78371 1.90660 1.19858 1.77538 1.61440 1.47524 1.06755 1.25436 1.51058 1.19073 0.92907 0.85451 0.91009 1.22567 1.47086 1.00800 0.95123 0.93625 1.27369 0.92572 0.92891 1.10198 1.70893 1.46797 1.21204 1.17882 0.82892 0.77818 0.75504 0.69619 1.18671 1.20879 1.20262 0.92957 0.91543 0.90504 0.89200 0.95655 0.91040 0.93769 0.92123 0.84343 0.84897 0.92606 0.86309 0.86709 0.95377 0.99305 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.94 71.98 0.64 -2.11 16 2 C -0.11 -3.01 2.15 -10.80 -0.02 -3.04 16 3 C -0.15 -4.72 7.76 71.98 0.56 -4.16 16 4 C 0.11 3.50 2.11 45.12 0.10 3.59 16 5 H 0.08 2.94 7.97 -2.39 -0.02 2.92 16 6 C 0.05 1.29 5.40 71.99 0.39 1.68 16 7 O -0.37 -8.24 9.26 -148.98 -1.38 -9.62 16 8 C 0.06 1.37 6.30 72.05 0.45 1.82 16 9 C -0.17 -4.81 5.43 29.77 0.16 -4.65 16 10 C 0.49 21.20 6.78 87.74 0.60 21.79 16 11 O -0.61 -33.38 16.15 -3.06 -0.05 -33.42 16 12 N -0.58 -24.82 1.94 -806.40 -1.56 -26.39 16 13 C 0.24 12.88 2.91 85.63 0.25 13.13 16 14 C -0.62 -36.14 9.37 25.60 0.24 -35.90 16 15 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 16 C -0.03 -1.90 5.46 84.65 0.46 -1.44 16 17 N -0.93 -58.66 13.65 21.45 0.29 -58.37 16 18 Si 1.12 51.53 29.90 68.60 2.05 53.58 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.42 6.78 -2.39 -0.02 1.40 16 25 H 0.09 2.41 4.13 -2.39 -0.01 2.40 16 26 H 0.02 0.98 6.15 -2.39 -0.01 0.96 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 29 H 0.06 1.59 5.54 -2.39 -0.01 1.58 16 30 H 0.14 2.56 8.03 -2.39 -0.02 2.54 16 31 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.42 5.20 -2.39 -0.01 1.40 16 33 H 0.12 3.03 6.03 -2.39 -0.01 3.02 16 34 H 0.11 2.97 8.10 -2.39 -0.02 2.95 16 35 H 0.03 1.52 5.64 -2.39 -0.01 1.51 16 36 H -0.01 -0.70 6.91 -2.39 -0.02 -0.72 16 37 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 Total: -1.00 -75.77 280.54 4.34 -71.43 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.16 Total: 12.06 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.82 Total: -9.27 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.27 Total: -84.76 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.43 Total: -43.04 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -75.77 4.34 -71.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.812 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds