Wall clock time and date at job start Mon Mar 30 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47645 * 274.98955 * 3 2 1 5 5 H 1.48503 * 109.47005 * 34.99025 * 3 2 1 6 6 H 1.48496 * 109.47074 * 154.98493 * 3 2 1 7 7 C 1.37873 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00572 * 162.35686 * 7 2 1 9 9 C 1.50706 * 119.99384 * 342.36026 * 7 2 1 10 10 C 1.53002 * 115.54882 * 320.15360 * 9 7 2 11 11 N 1.46901 * 109.46926 * 283.74965 * 10 9 7 12 12 C 1.47902 * 110.99677 * 79.83869 * 11 10 9 13 13 C 1.54001 * 107.05539 * 214.15140 * 12 11 10 14 14 C 1.54599 * 105.13923 * 1.22465 * 13 12 11 15 15 O 1.42903 * 110.71857 * 263.41926 * 14 13 12 16 16 C 1.52996 * 110.72370 * 140.31377 * 14 13 12 17 17 O 1.42908 * 109.46880 * 60.11911 * 16 14 13 18 18 C 1.48529 * 111.00541 * 322.43669 * 11 10 9 19 19 C 1.53001 * 117.49430 * 174.48604 * 9 7 2 20 20 C 1.52993 * 60.03083 * 252.49755 * 19 9 7 21 21 H 0.97001 * 119.99739 * 355.03516 * 1 2 3 22 22 H 1.08994 * 109.47223 * 43.75540 * 10 9 7 23 23 H 1.09004 * 109.46910 * 163.75644 * 10 9 7 24 24 H 1.08997 * 109.91564 * 333.50113 * 12 11 10 25 25 H 1.08995 * 109.91861 * 94.79860 * 12 11 10 26 26 H 1.09000 * 110.30682 * 120.13752 * 13 12 11 27 27 H 1.08997 * 110.30390 * 242.30854 * 13 12 11 28 28 H 0.96690 * 113.99910 * 298.54489 * 15 14 13 29 29 H 1.08997 * 109.46970 * 180.11377 * 16 14 13 30 30 H 1.09003 * 109.47353 * 300.12208 * 16 14 13 31 31 H 0.96694 * 113.99765 * 180.02562 * 17 16 14 32 32 H 1.08998 * 110.66868 * 278.15496 * 18 11 10 33 33 H 1.09000 * 110.66309 * 41.28942 * 18 11 10 34 34 H 1.09002 * 117.50119 * 359.97438 * 19 9 7 35 35 H 1.09002 * 117.49291 * 144.99628 * 19 9 7 36 36 H 1.08995 * 117.49984 * 107.50618 * 20 19 9 37 37 H 1.09002 * 117.49824 * 252.52192 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3913 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0046 -1.1940 -0.0005 8 1 3.0465 -1.2159 -0.2840 9 6 1.3042 -2.4686 0.3944 10 6 0.3334 -2.3507 1.5711 11 7 1.0924 -2.2773 2.8267 12 6 1.6142 -0.9117 3.0514 13 6 2.9748 -1.0586 3.7577 14 6 3.2000 -2.5827 3.8873 15 8 2.7969 -3.0453 5.1779 16 6 4.6637 -2.9384 3.6196 17 8 5.4977 -2.2687 4.5673 18 6 2.2834 -3.1636 2.7814 19 6 2.0841 -3.7770 0.2503 20 6 0.9471 -3.4540 -0.7211 21 1 -0.4850 0.8369 0.0727 22 1 -0.2682 -1.4490 1.4569 23 1 -0.3198 -3.2231 1.5920 24 1 1.7446 -0.4023 2.0967 25 1 0.9262 -0.3507 3.6838 26 1 3.7643 -0.6095 3.1551 27 1 2.9409 -0.5960 4.7440 28 1 3.2912 -2.6507 5.9092 29 1 4.7989 -4.0158 3.7142 30 1 4.9353 -2.6251 2.6115 31 1 6.4413 -2.4483 4.4569 32 1 2.0065 -4.1922 3.0123 33 1 2.7702 -3.1043 1.8079 34 1 3.1036 -3.7159 -0.1306 35 1 1.9055 -4.5538 0.9938 36 1 1.2186 -3.1805 -1.7406 37 1 0.0203 -4.0182 -0.6165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313690880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:19 Heat of formation + Delta-G solvation = -48.900245 kcal Electronic energy + Delta-G solvation = -19094.648865 eV Core-core repulsion = 16259.588471 eV Total energy + Delta-G solvation = -2835.060394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47172 -37.32192 -35.70943 -34.26194 -32.46282 -30.40492 -28.59200 -26.22738 -25.42420 -23.53503 -21.71267 -20.30458 -19.52245 -19.07072 -17.18593 -16.55077 -16.25042 -15.01676 -14.78556 -14.59150 -14.07591 -13.86310 -13.71451 -13.09564 -12.63800 -12.49516 -11.94385 -11.84343 -11.46632 -11.15194 -11.01427 -10.84058 -10.64985 -10.45974 -10.22722 -10.08450 -9.98072 -9.80669 -9.66675 -9.42311 -9.12790 -8.69023 -8.05913 -7.13389 -6.22294 -4.18955 3.16843 3.27487 3.30134 4.24263 4.26044 4.58850 4.81708 5.01526 5.22652 5.33447 5.47611 5.53471 5.66615 5.73634 6.03888 6.09213 6.25053 6.33559 6.42083 6.45474 6.47754 6.56229 6.66037 6.84011 6.86508 6.99150 7.12720 7.24381 7.36409 7.44528 7.61942 7.77161 8.00148 8.12131 8.16045 8.34254 8.74732 9.35397 10.81240 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.010748 C = 0.008947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.335058 B = 2604.608025 C = 3128.805758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.489 4.489 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.501 5.501 12 C 0.021 3.979 13 C -0.142 4.142 14 C 0.129 3.871 15 O -0.546 6.546 16 C 0.055 3.945 17 O -0.574 6.574 18 C 0.032 3.968 19 C -0.215 4.215 20 C -0.198 4.198 21 H 0.264 0.736 22 H 0.117 0.883 23 H 0.041 0.959 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.370 0.630 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.376 0.624 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 -3.394 5.777 9.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.024 3.976 10 C -0.060 4.060 11 N -0.223 5.223 12 C -0.107 4.107 13 C -0.180 4.180 14 C 0.088 3.912 15 O -0.351 6.351 16 C -0.023 4.023 17 O -0.379 6.379 18 C -0.095 4.095 19 C -0.252 4.252 20 C -0.236 4.236 21 H 0.074 0.926 22 H 0.134 0.866 23 H 0.059 0.941 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.216 0.784 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.671 -3.529 5.984 8.968 hybrid contribution 1.959 1.148 -0.654 2.363 sum 7.630 -2.382 5.330 9.607 Atomic orbital electron populations 1.69993 1.05876 1.27211 1.46807 1.24851 0.94650 0.98821 0.94439 0.86942 0.80773 0.84198 0.78427 1.20559 1.20492 1.19400 1.20482 0.96169 0.90383 1.45569 0.92309 1.19628 0.96008 0.88105 0.93900 1.22033 0.95496 1.03201 0.85309 1.65078 1.18822 1.05086 1.33348 1.23116 0.93155 0.92574 1.01836 1.22935 0.98765 0.95589 1.00707 1.22234 0.90112 0.93967 0.84908 1.86544 1.64070 1.69550 1.14889 1.22911 0.91435 0.95752 0.92235 1.86416 1.20904 1.73355 1.57220 1.23889 0.91847 0.97206 0.96608 1.23036 0.96079 1.02420 1.03688 1.22982 0.96908 1.07303 0.96444 0.92578 0.86576 0.94067 0.88638 0.92674 0.91309 0.91875 0.78393 0.93202 0.92369 0.77741 0.91141 0.87699 0.90689 0.90803 0.90617 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.88 11.13 55.43 0.62 -22.26 16 2 C 0.08 1.94 3.47 -17.82 -0.06 1.88 16 3 Si 0.87 19.84 28.89 -169.99 -4.91 14.93 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.49 -12.43 7.57 -34.44 -0.26 -12.69 16 8 H 0.06 1.51 7.88 -52.49 -0.41 1.10 16 9 C 0.03 0.59 1.03 -155.62 -0.16 0.43 16 10 C 0.07 1.58 5.48 -3.82 -0.02 1.56 16 11 N -0.50 -11.01 5.54 -230.46 -1.28 -12.28 16 12 C 0.02 0.45 6.35 -2.75 -0.02 0.43 16 13 C -0.14 -2.66 5.97 -25.37 -0.15 -2.81 16 14 C 0.13 2.29 1.14 -88.76 -0.10 2.19 16 15 O -0.55 -9.60 13.11 -39.90 -0.52 -10.12 16 16 C 0.06 0.81 6.13 37.16 0.23 1.03 16 17 O -0.57 -7.50 13.05 -39.90 -0.52 -8.02 16 18 C 0.03 0.63 4.07 -1.90 -0.01 0.63 16 19 C -0.22 -4.44 6.92 -26.73 -0.18 -4.62 16 20 C -0.20 -4.42 9.89 -26.70 -0.26 -4.68 16 21 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 22 H 0.12 3.01 5.37 -51.93 -0.28 2.73 16 23 H 0.04 0.95 7.99 -51.93 -0.42 0.53 16 24 H 0.10 2.26 3.17 -51.93 -0.16 2.10 16 25 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 27 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.37 5.30 8.81 45.56 0.40 5.70 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.38 3.09 9.12 45.56 0.42 3.51 16 32 H 0.07 1.38 7.69 -51.93 -0.40 0.98 16 33 H 0.11 2.13 3.73 -51.93 -0.19 1.94 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.07 1.42 6.57 -51.93 -0.34 1.08 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 37 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 LS Contribution 284.42 15.07 4.29 4.29 Total: -1.00 -28.13 284.42 -7.21 -35.34 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -3.88 Total: 14.79 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.00 Total: -16.66 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.66 Total: -34.54 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.04 Total: -18.14 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.91 Total: 14.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.13 -7.21 -35.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313690880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.559 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds