Wall clock time and date at job start Mon Mar 30 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47645 * 274.98955 * 3 2 1 5 5 H 1.48503 * 109.47005 * 34.99025 * 3 2 1 6 6 H 1.48496 * 109.47074 * 154.98493 * 3 2 1 7 7 C 1.37873 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00572 * 162.35686 * 7 2 1 9 9 C 1.50706 * 119.99384 * 342.36026 * 7 2 1 10 10 C 1.53002 * 115.54882 * 320.15360 * 9 7 2 11 11 N 1.46901 * 109.46926 * 283.74965 * 10 9 7 12 12 C 1.47902 * 110.99677 * 79.83869 * 11 10 9 13 13 C 1.54001 * 107.05539 * 214.15140 * 12 11 10 14 14 C 1.54599 * 105.13923 * 1.22465 * 13 12 11 15 15 O 1.42903 * 110.71857 * 263.41926 * 14 13 12 16 16 C 1.52996 * 110.72370 * 140.31377 * 14 13 12 17 17 O 1.42908 * 109.46880 * 60.11911 * 16 14 13 18 18 C 1.48529 * 111.00541 * 322.43669 * 11 10 9 19 19 C 1.53001 * 117.49430 * 174.48604 * 9 7 2 20 20 C 1.52993 * 60.03083 * 252.49755 * 19 9 7 21 21 H 0.97001 * 119.99739 * 355.03516 * 1 2 3 22 22 H 1.08994 * 109.47223 * 43.75540 * 10 9 7 23 23 H 1.09004 * 109.46910 * 163.75644 * 10 9 7 24 24 H 1.08997 * 109.91564 * 333.50113 * 12 11 10 25 25 H 1.08995 * 109.91861 * 94.79860 * 12 11 10 26 26 H 1.09000 * 110.30682 * 120.13752 * 13 12 11 27 27 H 1.08997 * 110.30390 * 242.30854 * 13 12 11 28 28 H 0.96690 * 113.99910 * 298.54489 * 15 14 13 29 29 H 1.08997 * 109.46970 * 180.11377 * 16 14 13 30 30 H 1.09003 * 109.47353 * 300.12208 * 16 14 13 31 31 H 0.96694 * 113.99765 * 180.02562 * 17 16 14 32 32 H 1.08998 * 110.66868 * 278.15496 * 18 11 10 33 33 H 1.09000 * 110.66309 * 41.28942 * 18 11 10 34 34 H 1.09002 * 117.50119 * 359.97438 * 19 9 7 35 35 H 1.09002 * 117.49291 * 144.99628 * 19 9 7 36 36 H 1.08995 * 117.49984 * 107.50618 * 20 19 9 37 37 H 1.09002 * 117.49824 * 252.52192 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3913 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0046 -1.1940 -0.0005 8 1 3.0465 -1.2159 -0.2840 9 6 1.3042 -2.4686 0.3944 10 6 0.3334 -2.3507 1.5711 11 7 1.0924 -2.2773 2.8267 12 6 1.6142 -0.9117 3.0514 13 6 2.9748 -1.0586 3.7577 14 6 3.2000 -2.5827 3.8873 15 8 2.7969 -3.0453 5.1779 16 6 4.6637 -2.9384 3.6196 17 8 5.4977 -2.2687 4.5673 18 6 2.2834 -3.1636 2.7814 19 6 2.0841 -3.7770 0.2503 20 6 0.9471 -3.4540 -0.7211 21 1 -0.4850 0.8369 0.0727 22 1 -0.2682 -1.4490 1.4569 23 1 -0.3198 -3.2231 1.5920 24 1 1.7446 -0.4023 2.0967 25 1 0.9262 -0.3507 3.6838 26 1 3.7643 -0.6095 3.1551 27 1 2.9409 -0.5960 4.7440 28 1 3.2912 -2.6507 5.9092 29 1 4.7989 -4.0158 3.7142 30 1 4.9353 -2.6251 2.6115 31 1 6.4413 -2.4483 4.4569 32 1 2.0065 -4.1922 3.0123 33 1 2.7702 -3.1043 1.8079 34 1 3.1036 -3.7159 -0.1306 35 1 1.9055 -4.5538 0.9938 36 1 1.2186 -3.1805 -1.7406 37 1 0.0203 -4.0182 -0.6165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313690880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:19 Heat of formation + Delta-G solvation = -72.303417 kcal Electronic energy + Delta-G solvation = -19095.663702 eV Core-core repulsion = 16259.588471 eV Total energy + Delta-G solvation = -2836.075232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02881 -38.78178 -36.93015 -35.78799 -34.38908 -31.91794 -30.11449 -27.94092 -27.16502 -25.04330 -23.39242 -21.95038 -20.96919 -20.90585 -18.27879 -18.08553 -17.90387 -16.69386 -16.36445 -16.14635 -15.69191 -15.37901 -15.18156 -14.70787 -14.25547 -14.02422 -13.61795 -13.33566 -13.01790 -12.88277 -12.78448 -12.45815 -12.35507 -12.20757 -11.97307 -11.63034 -11.54145 -11.46423 -11.00773 -10.95954 -10.72237 -10.50684 -9.90774 -8.86677 -8.16465 -6.16586 1.34395 1.41600 1.48146 2.37616 2.93007 3.12718 3.23919 3.48742 3.68778 3.85345 3.93643 4.19165 4.30821 4.43970 4.47227 4.52634 4.66981 4.74832 4.79266 4.80514 4.90238 4.96574 5.06070 5.14547 5.22743 5.31766 5.37783 5.50727 5.55034 5.57641 5.89271 6.23664 6.37064 6.47790 6.81046 6.85077 6.94410 7.39330 8.86631 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.010748 C = 0.008947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.335058 B = 2604.608025 C = 3128.805758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.052 0.948 9 C 0.002 3.998 10 C 0.075 3.925 11 N -0.509 5.509 12 C 0.017 3.983 13 C -0.136 4.136 14 C 0.132 3.868 15 O -0.557 6.557 16 C 0.065 3.935 17 O -0.582 6.582 18 C 0.031 3.969 19 C -0.183 4.183 20 C -0.206 4.206 21 H 0.262 0.738 22 H 0.089 0.911 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.384 0.616 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -4.070 6.632 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.157 4.157 3 Si 0.742 3.258 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.000 4.000 10 C -0.053 4.053 11 N -0.231 5.231 12 C -0.111 4.111 13 C -0.175 4.175 14 C 0.091 3.909 15 O -0.364 6.364 16 C -0.014 4.014 17 O -0.390 6.390 18 C -0.096 4.096 19 C -0.220 4.220 20 C -0.245 4.245 21 H 0.072 0.928 22 H 0.107 0.893 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.233 0.767 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.474 -4.211 6.848 10.976 hybrid contribution 1.404 1.341 -0.890 2.135 sum 8.877 -2.870 5.957 11.070 Atomic orbital electron populations 1.70082 1.06948 1.27576 1.48029 1.25332 0.95050 1.01020 0.94288 0.86216 0.80098 0.81415 0.78109 1.20754 1.20522 1.18656 1.20634 0.95838 0.91496 1.45360 0.92986 1.19626 0.97311 0.88651 0.94387 1.21802 0.95548 1.01654 0.86300 1.65053 1.20049 1.05679 1.32303 1.23081 0.94737 0.92264 1.01042 1.22888 0.96755 0.96966 1.00853 1.22115 0.91775 0.92546 0.84476 1.86499 1.64879 1.69746 1.15312 1.22654 0.89603 0.96725 0.92379 1.86354 1.22705 1.73310 1.56670 1.23853 0.91358 0.96965 0.97412 1.23016 0.95841 1.00682 1.02509 1.22991 0.98249 1.07311 0.95942 0.92788 0.89340 0.94209 0.90656 0.93449 0.91484 0.90653 0.76679 0.91553 0.92467 0.75056 0.90839 0.88220 0.89721 0.89053 0.91590 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.98 11.13 21.45 0.24 -47.74 16 2 C 0.04 2.28 3.47 84.65 0.29 2.57 16 3 Si 0.92 40.71 28.89 68.60 1.98 42.69 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.50 -25.14 7.57 25.60 0.19 -24.95 16 8 H 0.05 2.65 7.88 -2.91 -0.02 2.62 16 9 C 0.00 0.09 1.03 -52.90 -0.05 0.03 16 10 C 0.08 3.55 5.48 86.30 0.47 4.02 16 11 N -0.51 -22.05 5.54 -883.03 -4.89 -26.93 16 12 C 0.02 0.72 6.35 86.45 0.55 1.26 16 13 C -0.14 -4.89 5.97 31.48 0.19 -4.70 16 14 C 0.13 4.36 1.14 -9.59 -0.01 4.34 16 15 O -0.56 -18.11 13.11 -144.52 -1.90 -20.01 16 16 C 0.06 1.69 6.13 71.98 0.44 2.13 16 17 O -0.58 -13.09 13.05 -144.52 -1.89 -14.98 16 18 C 0.03 1.18 4.07 86.65 0.35 1.54 16 19 C -0.18 -7.22 6.92 30.59 0.21 -7.01 16 20 C -0.21 -9.07 9.89 30.61 0.30 -8.77 16 21 H 0.26 13.64 8.32 -92.71 -0.77 12.87 16 22 H 0.09 4.70 5.37 -2.39 -0.01 4.69 16 23 H 0.04 1.83 7.99 -2.38 -0.02 1.81 16 24 H 0.08 3.57 3.17 -2.39 -0.01 3.57 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16 27 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 28 H 0.38 9.89 8.81 -74.06 -0.65 9.24 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 31 H 0.40 5.01 9.12 -74.06 -0.68 4.33 16 32 H 0.07 2.70 7.69 -2.39 -0.02 2.68 16 33 H 0.10 3.85 3.73 -2.39 -0.01 3.85 16 34 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.09 3.28 6.57 -2.39 -0.02 3.26 16 36 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 3.01 8.12 -2.39 -0.02 2.99 16 Total: -1.00 -58.82 284.42 -3.75 -62.57 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.24 Total: 33.94 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 2.94 Total: -29.53 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -4.65 Total: -74.68 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -3.78 Total: -34.99 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.98 Total: 42.69 kcal Total: -58.82 -3.75 -62.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313690880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.737 kcal (2) G-P(sol) polarization free energy of solvation -58.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds