Wall clock time and date at job start Mon Mar 30 2020 03:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48503 * 109.46946 * 270.96166 * 3 2 1 5 5 H 1.48506 * 109.47070 * 30.95828 * 3 2 1 6 6 H 1.48493 * 109.47322 * 150.95762 * 3 2 1 7 7 C 1.37880 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 354.35893 * 7 2 1 9 9 C 1.50703 * 119.99837 * 174.35048 * 7 2 1 10 10 C 1.53006 * 115.54525 * 89.83048 * 9 7 2 11 11 N 1.46897 * 109.46982 * 38.90904 * 10 9 7 12 12 C 1.47902 * 110.99833 * 75.34915 * 11 10 9 13 13 C 1.54000 * 107.05982 * 145.84416 * 12 11 10 14 14 C 1.54600 * 105.22113 * 358.72083 * 13 12 11 15 15 O 1.42904 * 110.72034 * 96.45435 * 14 13 12 16 16 C 1.52998 * 110.72371 * 219.73285 * 14 13 12 17 17 O 1.42903 * 109.47382 * 303.55230 * 16 14 13 18 18 C 1.48535 * 110.99878 * 192.74360 * 11 10 9 19 19 C 1.52995 * 117.51965 * 235.53542 * 9 7 2 20 20 C 1.52997 * 60.00323 * 107.48278 * 19 9 7 21 21 H 0.97001 * 120.00584 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47238 * 278.90711 * 10 9 7 23 23 H 1.09000 * 109.46652 * 158.90958 * 10 9 7 24 24 H 1.08993 * 109.92152 * 26.48906 * 12 11 10 25 25 H 1.09000 * 109.91560 * 265.19098 * 12 11 10 26 26 H 1.09000 * 110.30970 * 117.68730 * 13 12 11 27 27 H 1.08996 * 110.30812 * 239.76062 * 13 12 11 28 28 H 0.96703 * 113.99749 * 61.45276 * 15 14 13 29 29 H 1.08999 * 109.46984 * 63.55004 * 16 14 13 30 30 H 1.08999 * 109.47464 * 183.55283 * 16 14 13 31 31 H 0.96701 * 114.00028 * 179.97438 * 17 16 14 32 32 H 1.09001 * 110.66508 * 318.71197 * 18 11 10 33 33 H 1.08998 * 110.66596 * 81.67819 * 18 11 10 34 34 H 1.09004 * 117.49792 * 214.97827 * 19 9 7 35 35 H 1.09001 * 117.49740 * 359.97438 * 19 9 7 36 36 H 1.08997 * 117.49655 * 252.50972 * 20 19 9 37 37 H 1.08996 * 117.52113 * 107.47680 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4762 2.0582 -1.3999 5 1 1.4567 2.6468 0.7202 6 1 3.5566 1.4345 0.6796 7 6 2.0046 -1.1941 0.0005 8 1 1.4686 -2.1271 0.0929 9 6 3.5061 -1.1972 -0.1279 10 6 4.2812 -1.1259 1.1893 11 7 3.6021 -1.9453 2.2019 12 6 3.8384 -3.3857 1.9636 13 6 3.9066 -4.0667 3.3432 14 6 3.7285 -2.9240 4.3691 15 8 2.3666 -2.8318 4.7920 16 6 4.6570 -3.1237 5.5686 17 8 4.4091 -4.4031 6.1551 18 6 4.1376 -1.6662 3.5590 19 6 4.1168 -2.0211 -1.2633 20 6 4.1127 -0.4932 -1.3435 21 1 -0.4851 0.8400 0.0004 22 1 4.3256 -0.0913 1.5292 23 1 5.2928 -1.5018 1.0364 24 1 4.7807 -3.5249 1.4339 25 1 3.0172 -3.8055 1.3826 26 1 3.1027 -4.7957 3.4455 27 1 4.8741 -4.5498 3.4792 28 1 2.0375 -3.6262 5.2344 29 1 5.6943 -3.0705 5.2380 30 1 4.4704 -2.3435 6.3066 31 1 4.9640 -4.5981 6.9227 32 1 5.2225 -1.5644 3.5310 33 1 3.6789 -0.7700 3.9767 34 1 5.0707 -2.5126 -1.0718 35 1 3.4324 -2.5615 -1.9174 36 1 3.4257 -0.0283 -2.0505 37 1 5.0636 0.0209 -1.2046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313690881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:21 Heat of formation + Delta-G solvation = -55.226777 kcal Electronic energy + Delta-G solvation = -18390.185610 eV Core-core repulsion = 15554.850877 eV Total energy + Delta-G solvation = -2835.334733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.43386 -37.32298 -36.12976 -34.82896 -31.83141 -30.77936 -29.05035 -26.45881 -25.16699 -23.86760 -21.54397 -20.79455 -20.18814 -18.70526 -17.44167 -16.84033 -16.21772 -15.32672 -14.90808 -14.65017 -14.46129 -13.98173 -13.64216 -13.32310 -12.99058 -12.54054 -12.27915 -12.16003 -11.96555 -11.55344 -11.23309 -10.94806 -10.83888 -10.56024 -10.36313 -10.22166 -10.11961 -9.92105 -9.64895 -9.46591 -8.90870 -8.36622 -8.28759 -7.51858 -5.86493 -3.82850 3.41950 3.50431 3.52899 3.93143 4.28932 4.59101 4.61802 4.90183 4.91774 5.08789 5.09716 5.29847 5.35955 5.43399 5.54101 5.84437 5.90956 5.97333 5.98702 6.10133 6.13800 6.23641 6.26582 6.38403 6.48743 6.53989 6.68666 6.80042 7.12522 7.21068 7.37570 7.61823 7.81332 7.99478 8.02391 8.75594 9.18846 9.78093 11.26920 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.007571 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.149406 B = 3697.253358 C = 4017.917674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.076 3.924 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.076 0.924 9 C 0.011 3.989 10 C 0.081 3.919 11 N -0.468 5.468 12 C 0.047 3.953 13 C -0.146 4.146 14 C 0.134 3.866 15 O -0.533 6.533 16 C 0.055 3.945 17 O -0.571 6.571 18 C 0.047 3.953 19 C -0.185 4.185 20 C -0.204 4.204 21 H 0.260 0.740 22 H 0.068 0.932 23 H 0.011 0.989 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.374 0.626 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.378 0.622 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.114 -6.129 9.723 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.125 4.125 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.094 0.906 9 C 0.009 3.991 10 C -0.047 4.047 11 N -0.191 5.191 12 C -0.081 4.081 13 C -0.184 4.184 14 C 0.092 3.908 15 O -0.338 6.338 16 C -0.024 4.024 17 O -0.376 6.376 18 C -0.081 4.081 19 C -0.222 4.222 20 C -0.242 4.242 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.221 0.779 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.225 0.775 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.003 -5.308 8.920 15.126 hybrid contribution 1.806 0.332 0.695 1.964 sum 12.809 -4.976 9.615 16.772 Atomic orbital electron populations 1.69893 1.06249 1.26483 1.51718 1.24869 0.94432 0.98544 0.94639 0.86906 0.80431 0.84089 0.77716 1.21062 1.22470 1.18811 1.20006 0.85949 0.94368 1.48139 0.90556 1.19420 0.96054 0.98625 0.84958 1.22103 0.92220 0.96920 0.93481 1.64659 1.52655 1.02575 0.99206 1.22795 1.00233 0.89560 0.95511 1.23021 1.02089 0.97950 0.95386 1.22018 0.82413 0.95728 0.90623 1.86648 1.25378 1.42424 1.79338 1.22896 0.98516 0.85109 0.95848 1.86450 1.65772 1.35930 1.49479 1.23174 0.96725 0.97015 0.91209 1.22871 1.00604 0.92802 1.05968 1.22954 1.01176 0.94864 1.05179 0.93026 0.91399 0.97060 0.94781 0.89788 0.90580 0.91508 0.77892 0.92969 0.92716 0.77502 0.93671 0.89356 0.91550 0.89636 0.89362 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 22.55 25.12 -169.99 -4.27 18.28 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.26 -6.35 5.35 56.52 0.30 -6.05 16 7 C -0.45 -12.71 8.72 -34.44 -0.30 -13.01 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.01 0.25 0.86 -155.66 -0.13 0.12 16 10 C 0.08 1.71 4.73 -3.82 -0.02 1.69 16 11 N -0.47 -9.67 4.53 -230.35 -1.04 -10.71 16 12 C 0.05 0.85 6.35 -2.75 -0.02 0.83 16 13 C -0.15 -2.19 5.88 -25.37 -0.15 -2.34 16 14 C 0.13 2.03 1.15 -88.67 -0.10 1.92 16 15 O -0.53 -9.10 13.11 -36.30 -0.48 -9.58 16 16 C 0.05 0.62 6.19 37.16 0.23 0.85 16 17 O -0.57 -5.88 13.09 -36.30 -0.48 -6.35 16 18 C 0.05 0.80 5.68 -1.81 -0.01 0.79 16 19 C -0.19 -3.84 9.88 -26.74 -0.26 -4.11 16 20 C -0.20 -4.44 7.66 -26.73 -0.20 -4.65 16 21 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 22 H 0.07 1.49 6.20 -51.93 -0.32 1.16 16 23 H 0.01 0.22 7.45 -51.93 -0.39 -0.17 16 24 H 0.03 0.58 7.48 -51.93 -0.39 0.19 16 25 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 26 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.37 5.07 8.94 45.56 0.41 5.48 16 29 H 0.05 0.51 8.03 -51.93 -0.42 0.10 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.38 2.08 9.12 45.56 0.42 2.49 16 32 H 0.05 0.66 7.84 -51.93 -0.41 0.25 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.09 2.04 7.23 -51.93 -0.38 1.66 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -33.53 295.30 -6.60 -40.13 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.49 Total: 7.34 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.07 Total: -15.76 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.27 Total: -38.50 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.95 Total: -15.93 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.27 Total: 18.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.53 -6.60 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313690881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.099 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds