Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48503 * 109.46946 * 270.96166 * 3 2 1 5 5 H 1.48506 * 109.47070 * 30.95828 * 3 2 1 6 6 H 1.48493 * 109.47322 * 150.95762 * 3 2 1 7 7 C 1.37880 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 354.35893 * 7 2 1 9 9 C 1.50703 * 119.99837 * 174.35048 * 7 2 1 10 10 C 1.53006 * 115.54525 * 89.83048 * 9 7 2 11 11 N 1.46897 * 109.46982 * 38.90904 * 10 9 7 12 12 C 1.47902 * 110.99833 * 75.34915 * 11 10 9 13 13 C 1.54000 * 107.05982 * 145.84416 * 12 11 10 14 14 C 1.54600 * 105.22113 * 358.72083 * 13 12 11 15 15 O 1.42904 * 110.72034 * 96.45435 * 14 13 12 16 16 C 1.52998 * 110.72371 * 219.73285 * 14 13 12 17 17 O 1.42903 * 109.47382 * 303.55230 * 16 14 13 18 18 C 1.48535 * 110.99878 * 192.74360 * 11 10 9 19 19 C 1.52995 * 117.51965 * 235.53542 * 9 7 2 20 20 C 1.52997 * 60.00323 * 107.48278 * 19 9 7 21 21 H 0.97001 * 120.00584 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47238 * 278.90711 * 10 9 7 23 23 H 1.09000 * 109.46652 * 158.90958 * 10 9 7 24 24 H 1.08993 * 109.92152 * 26.48906 * 12 11 10 25 25 H 1.09000 * 109.91560 * 265.19098 * 12 11 10 26 26 H 1.09000 * 110.30970 * 117.68730 * 13 12 11 27 27 H 1.08996 * 110.30812 * 239.76062 * 13 12 11 28 28 H 0.96703 * 113.99749 * 61.45276 * 15 14 13 29 29 H 1.08999 * 109.46984 * 63.55004 * 16 14 13 30 30 H 1.08999 * 109.47464 * 183.55283 * 16 14 13 31 31 H 0.96701 * 114.00028 * 179.97438 * 17 16 14 32 32 H 1.09001 * 110.66508 * 318.71197 * 18 11 10 33 33 H 1.08998 * 110.66596 * 81.67819 * 18 11 10 34 34 H 1.09004 * 117.49792 * 214.97827 * 19 9 7 35 35 H 1.09001 * 117.49740 * 359.97438 * 19 9 7 36 36 H 1.08997 * 117.49655 * 252.50972 * 20 19 9 37 37 H 1.08996 * 117.52113 * 107.47680 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4762 2.0582 -1.3999 5 1 1.4567 2.6468 0.7202 6 1 3.5566 1.4345 0.6796 7 6 2.0046 -1.1941 0.0005 8 1 1.4686 -2.1271 0.0929 9 6 3.5061 -1.1972 -0.1279 10 6 4.2812 -1.1259 1.1893 11 7 3.6021 -1.9453 2.2019 12 6 3.8384 -3.3857 1.9636 13 6 3.9066 -4.0667 3.3432 14 6 3.7285 -2.9240 4.3691 15 8 2.3666 -2.8318 4.7920 16 6 4.6570 -3.1237 5.5686 17 8 4.4091 -4.4031 6.1551 18 6 4.1376 -1.6662 3.5590 19 6 4.1168 -2.0211 -1.2633 20 6 4.1127 -0.4932 -1.3435 21 1 -0.4851 0.8400 0.0004 22 1 4.3256 -0.0913 1.5292 23 1 5.2928 -1.5018 1.0364 24 1 4.7807 -3.5249 1.4339 25 1 3.0172 -3.8055 1.3826 26 1 3.1027 -4.7957 3.4455 27 1 4.8741 -4.5498 3.4792 28 1 2.0375 -3.6262 5.2344 29 1 5.6943 -3.0705 5.2380 30 1 4.4704 -2.3435 6.3066 31 1 4.9640 -4.5981 6.9227 32 1 5.2225 -1.5644 3.5310 33 1 3.6789 -0.7700 3.9767 34 1 5.0707 -2.5126 -1.0718 35 1 3.4324 -2.5615 -1.9174 36 1 3.4257 -0.0283 -2.0505 37 1 5.0636 0.0209 -1.2046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313690881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = -84.909816 kcal Electronic energy + Delta-G solvation = -18391.472763 eV Core-core repulsion = 15554.850877 eV Total energy + Delta-G solvation = -2836.621886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70254 -38.82572 -37.21450 -36.15730 -34.06801 -32.09883 -30.26699 -28.10462 -26.98006 -25.16797 -23.24024 -22.21219 -21.43385 -20.57364 -18.23709 -18.19698 -17.99385 -16.87096 -16.43612 -16.18323 -15.71973 -15.33937 -15.09513 -14.74298 -14.70575 -14.30341 -13.65701 -13.53282 -13.35019 -13.04400 -12.94539 -12.53573 -12.34947 -12.09561 -11.90787 -11.81674 -11.69964 -11.41329 -10.97206 -10.82103 -10.78421 -10.51839 -10.14624 -8.96287 -8.14286 -6.13932 1.37620 1.40606 1.51745 2.46725 2.93295 3.12584 3.21468 3.27857 3.47693 3.72628 3.82973 4.10291 4.19192 4.28426 4.32899 4.39734 4.48418 4.53163 4.61975 4.70807 4.74896 4.83541 4.87430 4.91972 4.93834 5.09015 5.10416 5.26188 5.40758 5.52461 5.82325 6.23389 6.33624 6.53162 6.86329 6.90032 6.92771 7.50411 9.03494 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.007571 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.149406 B = 3697.253358 C = 4017.917674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C 0.011 3.989 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.307 1.307 6 H -0.233 1.233 7 C -0.436 4.436 8 H 0.021 0.979 9 C -0.020 4.020 10 C 0.090 3.910 11 N -0.513 5.513 12 C 0.050 3.950 13 C -0.136 4.136 14 C 0.128 3.872 15 O -0.565 6.565 16 C 0.068 3.932 17 O -0.584 6.584 18 C 0.045 3.955 19 C -0.167 4.167 20 C -0.197 4.197 21 H 0.258 0.742 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.385 0.615 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.401 0.599 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.045 -6.065 10.662 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.234 1.234 6 H -0.156 1.156 7 C -0.474 4.474 8 H 0.040 0.960 9 C -0.021 4.021 10 C -0.038 4.038 11 N -0.237 5.237 12 C -0.078 4.078 13 C -0.175 4.175 14 C 0.087 3.913 15 O -0.372 6.372 16 C -0.011 4.011 17 O -0.393 6.393 18 C -0.083 4.083 19 C -0.204 4.204 20 C -0.235 4.235 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.234 0.766 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.251 0.749 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.979 -5.277 9.877 18.702 hybrid contribution 0.508 0.158 0.394 0.662 sum 15.486 -5.118 10.271 19.275 Atomic orbital electron populations 1.70074 1.08412 1.27247 1.54669 1.25745 0.95107 1.02656 0.94871 0.85904 0.80149 0.78895 0.78381 1.19864 1.23446 1.15589 1.20118 0.89092 0.92007 1.46167 0.96035 1.19377 0.93324 1.01977 0.87395 1.21920 0.93245 0.96846 0.91825 1.64462 1.54573 1.03774 1.00889 1.22692 0.99395 0.88579 0.97128 1.22957 1.03321 0.97664 0.93521 1.22164 0.82300 0.94622 0.92229 1.86601 1.27215 1.43600 1.79781 1.22643 0.98305 0.85762 0.94368 1.86393 1.66851 1.35281 1.50779 1.23217 0.98443 0.97223 0.89397 1.22882 1.01467 0.92591 1.03430 1.22990 1.01927 0.95634 1.02916 0.93321 0.92254 0.93766 0.93007 0.93671 0.91307 0.88698 0.76597 0.90553 0.92139 0.74857 0.90269 0.91207 0.87826 0.91116 0.91254 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.80 13.96 21.45 0.30 -63.50 16 2 C 0.01 0.66 5.47 84.66 0.46 1.12 16 3 Si 0.94 46.72 25.12 68.60 1.72 48.44 16 4 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.23 -10.32 5.35 99.48 0.53 -9.79 16 7 C -0.44 -25.64 8.72 25.60 0.22 -25.42 16 8 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 9 C -0.02 -0.89 0.86 -52.93 -0.05 -0.94 16 10 C 0.09 3.55 4.73 86.31 0.41 3.96 16 11 N -0.51 -20.70 4.53 -882.68 -4.00 -24.70 16 12 C 0.05 1.76 6.35 86.45 0.55 2.31 16 13 C -0.14 -3.83 5.88 31.48 0.19 -3.65 16 14 C 0.13 3.62 1.15 -9.53 -0.01 3.61 16 15 O -0.56 -19.23 13.11 -147.96 -1.94 -21.17 16 16 C 0.07 1.28 6.19 71.98 0.45 1.72 16 17 O -0.58 -10.01 13.09 -147.96 -1.94 -11.94 16 18 C 0.04 1.44 5.68 86.71 0.49 1.93 16 19 C -0.17 -6.52 9.88 30.59 0.30 -6.22 16 20 C -0.20 -8.00 7.66 30.59 0.23 -7.76 16 21 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 22 H 0.06 2.41 6.20 -2.39 -0.01 2.39 16 23 H 0.04 1.46 7.45 -2.39 -0.02 1.44 16 24 H 0.05 1.60 7.48 -2.39 -0.02 1.59 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 27 H 0.09 2.14 7.85 -2.39 -0.02 2.12 16 28 H 0.39 10.44 8.94 -74.05 -0.66 9.78 16 29 H 0.08 1.10 8.03 -2.39 -0.02 1.08 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.40 2.86 9.12 -74.06 -0.68 2.19 16 32 H 0.08 1.97 7.84 -2.39 -0.02 1.95 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.10 3.31 8.08 -2.38 -0.02 3.29 16 35 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.07 3.08 7.23 -2.39 -0.02 3.06 16 37 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -76.55 295.30 -3.05 -79.60 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.45 Total: 22.61 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.25 Total: -29.34 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.70 Total: -88.20 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -3.88 Total: -33.11 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.72 Total: 48.44 kcal Total: -76.55 -3.05 -79.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313690881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.310 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds