Wall clock time and date at job start Mon Mar 30 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99740 * 2 1 4 4 C 1.53002 * 109.46918 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46850 * 65.00499 * 4 3 2 6 6 C 1.37097 * 120.00482 * 85.69437 * 5 4 3 7 7 H 1.07995 * 120.00342 * 213.85151 * 6 5 4 8 8 C 1.38950 * 119.99594 * 33.84926 * 6 5 4 9 9 N 1.31413 * 120.00473 * 23.47185 * 8 6 5 10 10 Si 1.86809 * 119.99994 * 203.46940 * 8 6 5 11 11 H 1.48502 * 109.47006 * 90.00009 * 10 8 6 12 12 H 1.48504 * 109.46981 * 210.00162 * 10 8 6 13 13 H 1.48504 * 109.46816 * 329.99939 * 10 8 6 14 14 C 1.34781 * 120.00029 * 265.69777 * 5 4 3 15 15 O 1.21295 * 119.99409 * 359.97438 * 14 5 4 16 16 C 1.50695 * 120.00332 * 180.02562 * 14 5 4 17 17 H 1.09001 * 115.54873 * 34.27601 * 16 14 5 18 18 C 1.52999 * 117.50140 * 248.60632 * 16 14 5 19 19 C 1.52997 * 59.99958 * 252.50622 * 18 16 14 20 20 C 1.52998 * 117.50122 * 252.50652 * 19 18 16 21 21 C 1.53001 * 117.49688 * 107.48629 * 19 18 16 22 22 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47667 * 300.00074 * 1 2 3 24 24 H 1.09000 * 109.47044 * 59.99967 * 1 2 3 25 25 H 1.09001 * 109.47311 * 60.00038 * 3 2 1 26 26 H 1.08998 * 109.47240 * 299.99762 * 3 2 1 27 27 H 1.09007 * 109.46937 * 184.99812 * 4 3 2 28 28 H 1.08999 * 109.47608 * 305.00109 * 4 3 2 29 29 H 0.96999 * 120.00381 * 180.02562 * 9 8 6 30 30 H 1.09001 * 117.49741 * 0.02562 * 18 16 14 31 31 H 1.09003 * 117.49827 * 144.99158 * 18 16 14 32 32 H 1.08994 * 109.47234 * 128.62638 * 20 19 18 33 33 H 1.09000 * 109.46946 * 248.62490 * 20 19 18 34 34 H 1.09000 * 109.46929 * 8.61974 * 20 19 18 35 35 H 1.09003 * 109.47479 * 351.37503 * 21 19 18 36 36 H 1.09001 * 109.47166 * 111.37437 * 21 19 18 37 37 H 1.08997 * 109.47469 * 231.38099 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1832 1.3374 -2.3640 7 1 3.9703 0.9395 -3.3451 8 6 4.6665 2.6332 -2.2297 9 7 5.3478 2.9727 -1.1585 10 14 4.3478 3.8928 -3.5720 11 1 3.0747 4.6039 -3.2913 12 1 5.4642 4.8715 -3.6075 13 1 4.2513 3.2041 -4.8841 14 6 4.1793 -0.7671 -1.3082 15 8 3.9969 -1.4512 -0.3233 16 6 4.6336 -1.4055 -2.5954 17 1 5.3038 -0.8025 -3.2082 18 6 3.6417 -2.3170 -3.3206 19 6 4.8465 -2.9206 -2.5961 20 6 5.9841 -3.4738 -3.4567 21 6 4.5817 -3.6716 -1.2897 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.9784 2.1767 0.0902 28 1 3.8508 0.5686 0.8427 29 1 5.6849 3.8774 -1.0646 30 1 2.6602 -2.4547 -2.8669 31 1 3.6592 -2.3137 -4.4105 32 1 6.9312 -3.0501 -3.1231 33 1 6.0176 -4.5591 -3.3606 34 1 5.8137 -3.2066 -4.4996 35 1 3.5434 -3.5267 -0.9913 36 1 4.7725 -4.7347 -1.4367 37 1 5.2404 -3.2886 -0.5104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316450327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:10 Heat of formation + Delta-G solvation = -54.358837 kcal Electronic energy + Delta-G solvation = -18479.350317 eV Core-core repulsion = 15644.053221 eV Total energy + Delta-G solvation = -2835.297096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.11333 -37.33544 -36.18152 -34.47915 -31.53296 -29.61411 -28.40461 -26.86595 -25.78215 -24.83166 -23.33889 -21.15186 -19.14934 -18.44531 -16.52613 -16.07690 -15.61803 -15.19491 -14.62501 -14.34037 -13.99424 -13.80698 -13.30685 -13.19290 -12.71271 -12.45239 -11.94700 -11.73905 -11.56167 -11.43860 -11.31075 -11.16319 -11.06058 -10.84984 -10.61399 -10.41979 -10.28748 -10.15615 -9.36195 -9.15312 -8.95807 -8.95005 -8.04503 -7.44665 -6.34629 -3.98776 3.10706 3.21640 3.23624 3.82314 4.11784 4.54389 4.55930 4.76608 5.06818 5.39141 5.52878 5.66619 5.69108 5.71856 5.76246 6.00002 6.07125 6.11491 6.16223 6.21375 6.25086 6.33151 6.41134 6.52176 6.57641 6.64253 6.78617 6.84392 6.98310 7.21413 7.26218 7.51086 7.91193 8.00012 8.45876 9.14815 9.65336 10.11126 10.66073 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.010506 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.603273 B = 2664.403267 C = 3690.273464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.051 3.949 4 C 0.111 3.889 5 N -0.438 5.438 6 C -0.328 4.328 7 H 0.090 0.910 8 C 0.038 3.962 9 N -0.862 5.862 10 Si 0.910 3.090 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.507 3.493 15 O -0.585 6.585 16 C -0.146 4.146 17 H 0.117 0.883 18 C -0.156 4.156 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.091 4.091 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.122 0.878 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -4.233 -2.540 6.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.026 4.026 4 C -0.013 4.013 5 N -0.157 5.157 6 C -0.456 4.456 7 H 0.107 0.893 8 C -0.167 4.167 9 N -0.500 5.500 10 Si 0.737 3.263 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.296 3.704 15 O -0.469 6.469 16 C -0.167 4.167 17 H 0.135 0.865 18 C -0.194 4.194 19 C -0.115 4.115 20 C -0.168 4.168 21 C -0.148 4.148 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.770 -4.536 -1.962 6.216 hybrid contribution -0.434 1.311 -0.818 1.605 sum -4.203 -3.225 -2.779 5.983 Atomic orbital electron populations 1.22614 0.83487 1.01548 0.98840 1.88130 1.17419 1.28239 1.95074 1.23086 0.96632 0.84184 0.98717 1.21558 0.89451 1.02333 0.87961 1.43250 1.57615 1.04677 1.10161 1.19451 1.43212 0.95745 0.87178 0.89280 1.25303 0.94512 0.99215 0.97672 1.69893 1.30901 1.19979 1.29185 0.86197 0.78075 0.80580 0.81460 1.20422 1.21031 1.19370 1.19385 0.79883 0.83105 0.88035 1.90519 1.56377 1.62581 1.37464 1.22206 1.03505 0.91874 0.99089 0.86527 1.23042 0.94630 1.03677 0.98055 1.21497 0.97305 0.94352 0.98314 1.21324 0.97133 1.00075 0.98223 1.21224 1.03174 0.95843 0.94555 0.90656 0.95182 0.94974 0.94508 0.93445 0.86125 0.91758 0.92112 0.89122 0.89324 0.92397 0.92578 0.92848 0.91785 0.94888 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -8.10 10.03 -35.23 -0.35 -8.45 16 3 C 0.05 1.10 6.26 37.16 0.23 1.33 16 4 C 0.11 2.71 5.49 -4.04 -0.02 2.68 16 5 N -0.44 -11.25 2.51 -114.81 -0.29 -11.54 16 6 C -0.33 -8.37 8.41 -14.93 -0.13 -8.49 16 7 H 0.09 2.22 7.15 -52.49 -0.38 1.85 16 8 C 0.04 0.95 4.98 -17.47 -0.09 0.86 16 9 N -0.86 -22.52 11.28 55.50 0.63 -21.90 16 10 Si 0.91 19.37 29.61 -169.99 -5.03 14.34 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 14 C 0.51 12.74 7.11 -10.99 -0.08 12.67 16 15 O -0.58 -15.54 12.28 5.54 0.07 -15.48 16 16 C -0.15 -3.12 4.72 -91.78 -0.43 -3.55 16 17 H 0.12 2.52 7.39 -51.93 -0.38 2.13 16 18 C -0.16 -2.85 9.52 -26.73 -0.25 -3.11 16 19 C -0.11 -2.08 2.70 -154.51 -0.42 -2.50 16 20 C -0.11 -1.63 9.85 37.16 0.37 -1.27 16 21 C -0.09 -1.71 8.09 37.16 0.30 -1.41 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.12 3.05 5.32 -51.92 -0.28 2.78 16 28 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 29 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.09 1.73 8.05 -51.93 -0.42 1.31 16 31 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.73 7.92 -51.93 -0.41 0.31 16 34 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 35 H 0.06 1.31 7.02 -51.93 -0.36 0.95 16 36 H 0.03 0.52 7.92 -51.93 -0.41 0.10 16 37 H 0.06 1.34 7.26 -51.93 -0.38 0.97 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -28.98 303.64 -5.71 -34.69 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.90 Total: 4.90 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.59 Total: -1.14 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.34 Total: -33.44 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.29 Total: -23.93 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.98 -5.71 -34.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316450327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.670 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds