Wall clock time and date at job start Mon Mar 30 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99740 * 2 1 4 4 C 1.53002 * 109.46918 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46850 * 65.00499 * 4 3 2 6 6 C 1.37097 * 120.00482 * 85.69437 * 5 4 3 7 7 H 1.07995 * 120.00342 * 213.85151 * 6 5 4 8 8 C 1.38950 * 119.99594 * 33.84926 * 6 5 4 9 9 N 1.31413 * 120.00473 * 23.47185 * 8 6 5 10 10 Si 1.86809 * 119.99994 * 203.46940 * 8 6 5 11 11 H 1.48502 * 109.47006 * 90.00009 * 10 8 6 12 12 H 1.48504 * 109.46981 * 210.00162 * 10 8 6 13 13 H 1.48504 * 109.46816 * 329.99939 * 10 8 6 14 14 C 1.34781 * 120.00029 * 265.69777 * 5 4 3 15 15 O 1.21295 * 119.99409 * 359.97438 * 14 5 4 16 16 C 1.50695 * 120.00332 * 180.02562 * 14 5 4 17 17 H 1.09001 * 115.54873 * 34.27601 * 16 14 5 18 18 C 1.52999 * 117.50140 * 248.60632 * 16 14 5 19 19 C 1.52997 * 59.99958 * 252.50622 * 18 16 14 20 20 C 1.52998 * 117.50122 * 252.50652 * 19 18 16 21 21 C 1.53001 * 117.49688 * 107.48629 * 19 18 16 22 22 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47667 * 300.00074 * 1 2 3 24 24 H 1.09000 * 109.47044 * 59.99967 * 1 2 3 25 25 H 1.09001 * 109.47311 * 60.00038 * 3 2 1 26 26 H 1.08998 * 109.47240 * 299.99762 * 3 2 1 27 27 H 1.09007 * 109.46937 * 184.99812 * 4 3 2 28 28 H 1.08999 * 109.47608 * 305.00109 * 4 3 2 29 29 H 0.96999 * 120.00381 * 180.02562 * 9 8 6 30 30 H 1.09001 * 117.49741 * 0.02562 * 18 16 14 31 31 H 1.09003 * 117.49827 * 144.99158 * 18 16 14 32 32 H 1.08994 * 109.47234 * 128.62638 * 20 19 18 33 33 H 1.09000 * 109.46946 * 248.62490 * 20 19 18 34 34 H 1.09000 * 109.46929 * 8.61974 * 20 19 18 35 35 H 1.09003 * 109.47479 * 351.37503 * 21 19 18 36 36 H 1.09001 * 109.47166 * 111.37437 * 21 19 18 37 37 H 1.08997 * 109.47469 * 231.38099 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1832 1.3374 -2.3640 7 1 3.9703 0.9395 -3.3451 8 6 4.6665 2.6332 -2.2297 9 7 5.3478 2.9727 -1.1585 10 14 4.3478 3.8928 -3.5720 11 1 3.0747 4.6039 -3.2913 12 1 5.4642 4.8715 -3.6075 13 1 4.2513 3.2041 -4.8841 14 6 4.1793 -0.7671 -1.3082 15 8 3.9969 -1.4512 -0.3233 16 6 4.6336 -1.4055 -2.5954 17 1 5.3038 -0.8025 -3.2082 18 6 3.6417 -2.3170 -3.3206 19 6 4.8465 -2.9206 -2.5961 20 6 5.9841 -3.4738 -3.4567 21 6 4.5817 -3.6716 -1.2897 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.9784 2.1767 0.0902 28 1 3.8508 0.5686 0.8427 29 1 5.6849 3.8774 -1.0646 30 1 2.6602 -2.4547 -2.8669 31 1 3.6592 -2.3137 -4.4105 32 1 6.9312 -3.0501 -3.1231 33 1 6.0176 -4.5591 -3.3606 34 1 5.8137 -3.2066 -4.4996 35 1 3.5434 -3.5267 -0.9913 36 1 4.7725 -4.7347 -1.4367 37 1 5.2404 -3.2886 -0.5104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316450327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:10 Heat of formation + Delta-G solvation = -71.509431 kcal Electronic energy + Delta-G solvation = -18480.094022 eV Core-core repulsion = 15644.053221 eV Total energy + Delta-G solvation = -2836.040802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88149 -38.96141 -37.84673 -36.39936 -33.47709 -31.30975 -29.90709 -28.23101 -27.24838 -26.75240 -25.01713 -22.88389 -20.94400 -20.07269 -18.29897 -17.92312 -17.25826 -16.91462 -16.29757 -16.06146 -15.68395 -15.42617 -14.81536 -14.74376 -14.27887 -14.02155 -13.49374 -13.34112 -13.25488 -13.18720 -12.78645 -12.69656 -12.65230 -12.52472 -12.20568 -12.03152 -11.98589 -11.90783 -11.02731 -10.89574 -10.55377 -10.50855 -9.92456 -9.40836 -8.26172 -5.97402 1.42017 1.48420 1.58697 2.04017 2.33559 2.89291 2.96690 3.01594 3.29398 3.91328 4.03446 4.13987 4.26459 4.31790 4.37567 4.49718 4.55088 4.62543 4.70191 4.77151 4.82342 4.88481 4.90895 5.05262 5.09873 5.16178 5.20757 5.26510 5.30006 5.38189 5.54132 5.70382 6.07400 6.36769 6.52263 7.20063 7.71968 8.18717 8.75451 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.010506 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.603273 B = 2664.403267 C = 3690.273464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.063 3.937 4 C 0.109 3.891 5 N -0.450 5.450 6 C -0.344 4.344 7 H 0.092 0.908 8 C 0.001 3.999 9 N -0.893 5.893 10 Si 0.978 3.022 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.491 3.509 15 O -0.611 6.611 16 C -0.177 4.177 17 H 0.111 0.889 18 C -0.137 4.137 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.085 4.085 22 H 0.089 0.911 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.040 0.960 29 H 0.272 0.728 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -4.614 -4.428 7.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.015 4.015 4 C -0.015 4.015 5 N -0.168 5.168 6 C -0.471 4.471 7 H 0.110 0.890 8 C -0.202 4.202 9 N -0.532 5.532 10 Si 0.802 3.198 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.184 1.184 14 C 0.281 3.719 15 O -0.498 6.498 16 C -0.197 4.197 17 H 0.129 0.871 18 C -0.174 4.174 19 C -0.104 4.104 20 C -0.163 4.163 21 C -0.143 4.143 22 H 0.108 0.892 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.436 -4.920 -3.855 7.665 hybrid contribution -0.245 1.383 -0.149 1.413 sum -4.681 -3.537 -4.003 7.102 Atomic orbital electron populations 1.22855 0.80643 1.03078 1.00383 1.88071 1.20594 1.28353 1.95362 1.22863 0.94429 0.84472 0.99690 1.21491 0.91903 1.00934 0.87137 1.43501 1.57736 1.05154 1.10440 1.19670 1.43855 0.96321 0.87278 0.89036 1.26111 0.93707 1.00508 0.99846 1.69990 1.31600 1.20517 1.31055 0.85150 0.77789 0.77855 0.78963 1.19891 1.20994 1.18398 1.20104 0.79469 0.83073 0.89251 1.90488 1.57548 1.63044 1.38719 1.22111 1.05850 0.93696 0.98089 0.87100 1.23111 0.93647 1.01075 0.99570 1.21728 0.98527 0.91731 0.98444 1.21349 0.95185 1.01408 0.98341 1.21125 1.00907 0.98006 0.94213 0.89236 0.92952 0.93983 0.91870 0.93858 0.87293 0.94144 0.91831 0.90362 0.86072 0.92718 0.90125 0.91038 0.94243 0.91330 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.75 10.03 -148.98 -1.49 -19.24 16 3 C 0.06 2.70 6.26 71.98 0.45 3.15 16 4 C 0.11 5.53 5.49 86.38 0.47 6.00 16 5 N -0.45 -23.74 2.51 -635.53 -1.60 -25.34 16 6 C -0.34 -17.72 8.41 84.04 0.71 -17.01 16 7 H 0.09 4.57 7.15 -2.91 -0.02 4.55 16 8 C 0.00 0.03 4.98 84.93 0.42 0.45 16 9 N -0.89 -47.37 11.28 21.66 0.24 -47.12 16 10 Si 0.98 39.23 29.61 68.60 2.03 41.27 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 14 C 0.49 25.42 7.11 87.65 0.62 26.04 16 15 O -0.61 -33.84 12.28 -3.08 -0.04 -33.88 16 16 C -0.18 -7.55 4.72 -11.54 -0.05 -7.60 16 17 H 0.11 4.81 7.39 -2.39 -0.02 4.79 16 18 C -0.14 -4.76 9.52 30.59 0.29 -4.47 16 19 C -0.10 -3.63 2.70 -52.18 -0.14 -3.78 16 20 C -0.11 -2.80 9.85 71.98 0.71 -2.10 16 21 C -0.09 -3.17 8.09 71.98 0.58 -2.59 16 22 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.11 5.72 5.32 -2.38 -0.01 5.71 16 28 H 0.04 2.17 7.30 -2.39 -0.02 2.15 16 29 H 0.27 13.51 8.31 -92.71 -0.77 12.73 16 30 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16 31 H 0.12 3.42 8.05 -2.39 -0.02 3.40 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.76 7.92 -2.39 -0.02 1.74 16 34 H 0.07 1.65 7.90 -2.39 -0.02 1.63 16 35 H 0.04 1.62 7.02 -2.39 -0.02 1.61 16 36 H 0.07 2.01 7.92 -2.39 -0.02 1.99 16 37 H 0.04 1.58 7.26 -2.39 -0.02 1.56 16 Total: -1.00 -64.00 303.64 5.50 -58.50 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 1.04 Total: 25.62 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.31 Total: 0.19 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.35 Total: -72.46 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -1.53 Total: -53.12 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.27 kcal Total: -64.00 5.50 -58.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316450327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.009 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds