Wall clock time and date at job start Mon Mar 30 2020 03:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.87401 * 2 1 4 4 C 1.54326 * 109.88412 * 238.82636 * 2 1 3 5 5 H 1.09000 * 110.72348 * 144.40514 * 4 2 1 6 6 O 1.42908 * 110.71556 * 21.13579 * 4 2 1 7 7 C 1.55151 * 102.94313 * 262.77524 * 4 2 1 8 8 C 1.54917 * 101.58025 * 324.49587 * 7 4 2 9 9 N 1.47021 * 109.88339 * 121.01789 * 2 1 3 10 10 C 1.34778 * 125.64744 * 300.50461 * 9 2 1 11 11 O 1.21280 * 119.99974 * 359.97438 * 10 9 2 12 12 C 1.50704 * 120.00087 * 179.97438 * 10 9 2 13 13 C 1.52997 * 109.47157 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46929 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99891 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00070 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46764 * 60.00496 * 18 16 14 20 20 H 1.48501 * 109.47202 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47428 * 300.00397 * 18 16 14 22 22 H 1.09000 * 109.46431 * 300.43394 * 1 2 3 23 23 H 1.08994 * 109.47054 * 60.43514 * 1 2 3 24 24 H 1.09002 * 109.46744 * 180.43916 * 1 2 3 25 25 H 1.08992 * 109.47220 * 179.56584 * 3 2 1 26 26 H 1.09005 * 109.47009 * 299.56781 * 3 2 1 27 27 H 1.08996 * 109.47006 * 59.56239 * 3 2 1 28 28 H 0.96701 * 113.99240 * 185.02529 * 6 4 2 29 29 H 1.08998 * 111.00631 * 206.42424 * 7 4 2 30 30 H 1.09004 * 111.00792 * 82.56822 * 7 4 2 31 31 H 1.09002 * 110.36419 * 155.85111 * 8 7 4 32 32 H 1.09001 * 110.36569 * 278.17123 * 8 7 4 33 33 H 1.09007 * 109.46927 * 300.00894 * 12 10 9 34 34 H 1.09000 * 109.46612 * 60.00404 * 12 10 9 35 35 H 1.09003 * 109.47056 * 300.00306 * 13 12 10 36 36 H 1.09003 * 109.47036 * 60.00235 * 13 12 10 37 37 H 0.97004 * 120.00208 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4389 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 2.9657 -0.2853 -1.6179 6 8 1.0544 -0.8044 -2.2607 7 6 2.3520 -2.1704 -0.6895 8 6 2.8569 -1.8487 0.7393 9 7 2.0301 -0.7124 1.1849 10 6 1.7744 -0.3818 2.4662 11 8 1.0773 0.5784 2.7172 12 6 2.3548 -1.2052 3.5871 13 6 1.9140 -0.6206 4.9305 14 6 2.4949 -1.4436 6.0513 15 1 3.1160 -2.2984 5.8278 16 6 2.2326 -1.1060 7.3621 17 7 1.4758 -0.0653 7.6343 18 14 2.9520 -2.1265 8.7514 19 1 4.4344 -2.1049 8.6651 20 1 2.5243 -1.5591 10.0553 21 1 2.4700 -3.5265 8.6382 22 1 -0.3632 0.5206 0.8861 23 1 -0.3633 0.5070 -0.8938 24 1 -0.3633 -1.0277 0.0079 25 1 3.1400 1.4313 0.0078 26 1 1.6968 1.9530 -0.8939 27 1 1.6841 1.9576 0.8860 28 1 1.3059 -1.3313 -3.0316 29 1 3.1271 -2.6635 -1.2760 30 1 1.4453 -2.7746 -0.6566 31 1 2.7090 -2.7061 1.3959 32 1 3.9093 -1.5656 0.7149 33 1 2.0003 -2.2327 3.5043 34 1 3.4428 -1.1900 3.5233 35 1 2.2682 0.4070 5.0133 36 1 0.8259 -0.6361 4.9940 37 1 1.2910 0.1721 8.5565 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336031519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:48 Heat of formation + Delta-G solvation = -121.701565 kcal Electronic energy + Delta-G solvation = -17995.580006 eV Core-core repulsion = 15157.362710 eV Total energy + Delta-G solvation = -2838.217296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55446 -39.20577 -36.52249 -35.60870 -33.92410 -32.72878 -31.54131 -28.33300 -27.69441 -26.05275 -24.34809 -23.09563 -21.29442 -19.46801 -18.63929 -18.29925 -17.45191 -16.75257 -16.57644 -16.32360 -15.42092 -15.39002 -14.88439 -14.57884 -14.36401 -14.21073 -13.86880 -13.78790 -13.21773 -13.02404 -12.84068 -12.76946 -12.60669 -12.51566 -12.42835 -12.12526 -11.91898 -11.64053 -11.44854 -11.31869 -10.83924 -10.56902 -10.56348 -9.65189 -8.18240 -6.33003 1.41642 1.46614 1.54376 1.70755 1.93586 2.43067 3.14537 3.18246 3.52729 3.60506 3.96062 4.01385 4.12746 4.25008 4.41058 4.44795 4.49252 4.53678 4.67732 4.69825 4.78536 4.87464 4.89420 5.00166 5.03726 5.19859 5.23063 5.34428 5.46887 5.59918 5.60909 5.83628 6.16231 6.53618 6.85166 6.97455 7.28849 7.37569 8.94396 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046991 B = 0.005064 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.717268 B = 5527.908352 C = 5874.569233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.152 3.848 3 C -0.151 4.151 4 C 0.113 3.887 5 H 0.097 0.903 6 O -0.567 6.567 7 C -0.153 4.153 8 C 0.088 3.912 9 N -0.616 5.616 10 C 0.524 3.476 11 O -0.581 6.581 12 C -0.111 4.111 13 C 0.044 3.956 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.262 1.262 22 H 0.028 0.972 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.401 0.599 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.101 0.899 35 H -0.019 1.019 36 H -0.020 1.020 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -6.666 -22.124 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 C -0.209 4.209 4 C 0.053 3.947 5 H 0.115 0.885 6 O -0.376 6.376 7 C -0.190 4.190 8 C -0.034 4.034 9 N -0.352 5.352 10 C 0.315 3.685 11 O -0.460 6.460 12 C -0.150 4.150 13 C 0.007 3.993 14 C -0.582 4.582 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.186 1.186 22 H 0.047 0.953 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.252 0.748 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.000 1.000 36 H -0.002 1.002 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.893 -5.676 -21.373 22.649 hybrid contribution 0.068 -0.188 0.883 0.905 sum 4.962 -5.863 -20.490 21.882 Atomic orbital electron populations 1.21759 0.94919 1.01421 1.01089 1.21011 0.94529 0.92513 0.85222 1.22088 1.01363 0.95337 1.02121 1.22651 0.90664 0.94879 0.86466 0.88508 1.86494 1.43500 1.76035 1.31579 1.23514 1.03564 0.97061 0.94904 1.22623 0.95546 0.88650 0.96572 1.48721 1.51320 1.31231 1.03887 1.21041 0.79653 0.84581 0.83251 1.90631 1.40360 1.30968 1.84039 1.21589 1.01992 0.99497 0.91950 1.18673 0.94506 0.94681 0.91469 1.21662 1.31386 1.13498 0.91619 0.90577 1.26156 0.95440 0.96421 1.02366 1.70184 1.39086 1.28545 1.20032 0.85350 0.79126 0.78723 0.76896 1.18570 1.21321 1.18644 0.95282 0.90409 0.93116 0.91436 0.90038 0.94679 0.74794 0.85694 0.90300 0.89464 0.89115 0.88318 0.88064 1.00026 1.00196 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.77 71.98 0.56 -3.56 16 2 C 0.15 4.07 0.82 3.96 0.00 4.07 16 3 C -0.15 -4.17 8.42 71.98 0.61 -3.57 16 4 C 0.11 1.82 3.72 31.78 0.12 1.94 16 5 H 0.10 1.17 7.86 -2.39 -0.02 1.15 16 6 O -0.57 -8.48 11.79 -148.98 -1.76 -10.23 16 7 C -0.15 -1.96 6.80 31.99 0.22 -1.74 16 8 C 0.09 1.68 6.69 86.86 0.58 2.27 16 9 N -0.62 -18.62 2.82 -765.23 -2.16 -20.77 16 10 C 0.52 21.84 7.42 87.66 0.65 22.49 16 11 O -0.58 -29.98 13.58 -3.03 -0.04 -30.03 16 12 C -0.11 -4.68 4.64 29.85 0.14 -4.54 16 13 C 0.04 2.55 4.26 29.85 0.13 2.68 16 14 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -60.57 13.29 21.45 0.28 -60.29 16 18 Si 0.98 44.67 29.54 68.60 2.03 46.69 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H 0.03 1.11 6.74 -2.39 -0.02 1.09 16 23 H 0.08 2.15 7.53 -2.39 -0.02 2.13 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.03 1.25 6.87 -2.39 -0.02 1.24 16 28 H 0.40 1.84 9.11 -74.06 -0.67 1.17 16 29 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.09 1.62 7.48 -2.39 -0.02 1.61 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 3.72 7.85 -2.38 -0.02 3.70 16 34 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 35 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 36 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 37 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -81.15 300.13 2.43 -78.73 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.37 Total: 7.06 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 3.70 Total: -11.16 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.87 Total: -81.06 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.80 Total: -40.26 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -81.15 2.43 -78.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336031519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.974 kcal (2) G-P(sol) polarization free energy of solvation -81.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds