Wall clock time and date at job start Mon Mar 30 2020 03:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.87118 * 2 1 4 4 C 1.54316 * 109.88363 * 121.01301 * 2 1 3 5 5 H 1.09003 * 110.72351 * 215.58842 * 4 2 1 6 6 O 1.42901 * 110.87509 * 338.79665 * 4 2 1 7 7 C 1.55158 * 102.94139 * 97.22645 * 4 2 1 8 8 C 1.54917 * 101.57978 * 35.50252 * 7 4 2 9 9 N 1.47020 * 109.88277 * 238.82772 * 2 1 3 10 10 C 1.34776 * 125.65281 * 59.55634 * 9 2 1 11 11 O 1.21285 * 119.99841 * 359.97438 * 10 9 2 12 12 C 1.50699 * 120.00365 * 179.97438 * 10 9 2 13 13 C 1.52995 * 109.47186 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46890 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00394 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99756 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00213 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47082 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46967 * 119.99780 * 18 16 14 21 21 H 1.48496 * 109.47213 * 239.99777 * 18 16 14 22 22 H 1.08996 * 109.47027 * 298.98400 * 1 2 3 23 23 H 1.08999 * 109.47118 * 58.98566 * 1 2 3 24 24 H 1.08995 * 109.46824 * 178.98286 * 1 2 3 25 25 H 1.09004 * 109.47143 * 181.01679 * 3 2 1 26 26 H 1.09003 * 109.47335 * 301.01839 * 3 2 1 27 27 H 1.08997 * 109.47552 * 61.01820 * 3 2 1 28 28 H 0.96696 * 113.99898 * 175.06210 * 6 4 2 29 29 H 1.08998 * 111.00511 * 277.42784 * 7 4 2 30 30 H 1.08996 * 111.04098 * 153.59117 * 7 4 2 31 31 H 1.08998 * 110.36726 * 81.82993 * 8 7 4 32 32 H 1.09005 * 110.36534 * 204.15515 * 8 7 4 33 33 H 1.09004 * 109.47135 * 299.99842 * 12 10 9 34 34 H 1.08993 * 109.47035 * 59.99497 * 12 10 9 35 35 H 1.08995 * 109.47224 * 299.99440 * 13 12 10 36 36 H 1.08993 * 109.47602 * 59.99773 * 13 12 10 37 37 H 0.96997 * 120.00099 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9657 -0.2808 1.6186 6 8 1.0575 -0.7987 2.2658 7 6 2.3520 -2.1684 0.6954 8 6 2.8569 -1.8507 -0.7343 9 7 2.0301 -0.7156 -1.1829 10 6 1.7754 -0.3879 -2.4652 11 8 1.0785 0.5718 -2.7189 12 6 2.3566 -1.2137 -3.5838 13 6 1.9179 -0.6313 -4.9288 14 6 2.4996 -1.4568 -6.0474 15 1 3.1205 -2.3111 -5.8216 16 6 2.2400 -1.1208 -7.3592 17 7 1.4843 -0.0801 -7.6343 18 14 2.9617 -2.1436 -8.7457 19 1 3.7701 -3.2509 -8.1750 20 1 1.8620 -2.7066 -9.5696 21 1 3.8272 -1.2861 -9.5947 22 1 -0.3633 0.4980 0.8989 23 1 -0.3633 0.5295 -0.8807 24 1 -0.3633 -1.0275 -0.0182 25 1 3.1400 1.4314 -0.0182 26 1 1.6756 1.9607 -0.8807 27 1 1.7054 1.9499 0.8989 28 1 1.3117 -1.3227 3.0377 29 1 1.4453 -2.7727 0.6643 30 1 3.1269 -2.6606 1.2830 31 1 3.9092 -1.5675 -0.7107 32 1 2.7089 -2.7099 -1.3886 33 1 3.4446 -1.1985 -3.5192 34 1 2.0020 -2.2409 -3.4991 35 1 0.8300 -0.6462 -4.9937 36 1 2.2728 0.3958 -5.0132 37 1 1.3014 0.1561 -8.5571 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336031520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:50 Heat of formation + Delta-G solvation = -95.813291 kcal Electronic energy + Delta-G solvation = -17993.316000 eV Core-core repulsion = 15156.221304 eV Total energy + Delta-G solvation = -2837.094696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36125 -37.89737 -35.57184 -33.54970 -32.61630 -31.07534 -30.21155 -27.14824 -25.68838 -25.12199 -22.82178 -21.77244 -19.92641 -18.04665 -17.56688 -16.81199 -15.81821 -15.46195 -15.12186 -14.48215 -14.39288 -14.17963 -13.83695 -13.22034 -13.06144 -12.78570 -12.22751 -12.20186 -11.95047 -11.76191 -11.61769 -11.39647 -11.11882 -11.04757 -10.92677 -10.57326 -10.50584 -10.14712 -9.93552 -9.61270 -9.11494 -8.91826 -8.39644 -8.29947 -5.94905 -3.99204 3.15917 3.26847 3.33237 3.40369 3.43629 3.94790 4.37100 4.44361 4.49780 4.81397 5.04781 5.20390 5.22138 5.38357 5.40109 5.48372 5.58343 5.62905 5.77147 5.91235 5.93879 6.01365 6.11885 6.22979 6.25138 6.39806 6.55521 6.72940 6.93268 7.39180 7.76171 7.88188 7.90696 8.08794 8.40094 8.79896 9.09533 9.64270 11.16123 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.005063 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.489471 B = 5529.497469 C = 5876.379542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.167 3.833 3 C -0.155 4.155 4 C 0.100 3.900 5 H 0.072 0.928 6 O -0.553 6.553 7 C -0.167 4.167 8 C 0.103 3.897 9 N -0.623 5.623 10 C 0.529 3.471 11 O -0.526 6.526 12 C -0.124 4.124 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.377 0.623 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -4.001 20.188 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.082 3.918 3 C -0.213 4.213 4 C 0.040 3.960 5 H 0.090 0.910 6 O -0.358 6.358 7 C -0.206 4.206 8 C -0.021 4.021 9 N -0.361 5.361 10 C 0.320 3.680 11 O -0.401 6.401 12 C -0.164 4.164 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.224 0.776 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.564 -2.965 19.358 19.751 hybrid contribution 0.817 -1.016 -0.375 1.357 sum 3.381 -3.981 18.983 19.689 Atomic orbital electron populations 1.21864 0.93427 1.02127 1.02532 1.20709 0.95469 0.91844 0.83753 1.22142 1.00672 0.95298 1.03208 1.22813 0.90368 0.94758 0.88044 0.91005 1.86541 1.43389 1.75417 1.30425 1.23523 1.02603 0.97798 0.96639 1.22167 0.94970 0.90200 0.94722 1.48833 1.52051 1.30260 1.04984 1.21279 0.79905 0.85263 0.81543 1.90647 1.37895 1.28824 1.82743 1.21857 1.00688 0.98948 0.94910 1.18912 0.97418 0.96411 0.87338 1.21252 1.31201 1.12905 0.91047 0.92602 1.25024 0.95248 0.95203 0.98889 1.70011 1.37493 1.26322 1.18999 0.86541 0.78911 0.80236 0.82310 1.19765 1.21016 1.21022 0.91582 0.91241 0.92956 0.92786 0.90514 0.91934 0.77564 0.89684 0.89864 0.91385 0.89926 0.90404 0.90421 0.95799 0.95799 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.78 37.16 0.29 -1.85 16 2 C 0.17 2.33 0.82 -130.84 -0.11 2.23 16 3 C -0.16 -2.16 8.41 37.16 0.31 -1.85 16 4 C 0.10 1.00 3.71 -24.90 -0.09 0.91 16 5 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 6 O -0.55 -5.17 11.79 -35.23 -0.42 -5.59 16 7 C -0.17 -1.46 6.80 -24.58 -0.17 -1.63 16 8 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 9 N -0.62 -9.68 2.82 -155.81 -0.44 -10.12 16 10 C 0.53 10.67 7.43 -10.99 -0.08 10.59 16 11 O -0.53 -12.59 13.62 5.55 0.08 -12.51 16 12 C -0.12 -2.60 4.64 -27.89 -0.13 -2.73 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.65 13.29 55.43 0.74 -26.92 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.07 0.92 7.50 -51.93 -0.39 0.53 16 23 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.38 1.73 9.11 45.56 0.42 2.15 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.50 7.85 -51.93 -0.41 1.09 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -34.59 300.19 -6.29 -40.88 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.23 Total: -0.95 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.52 Total: -6.08 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.30 Total: -37.04 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.34 Total: -18.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.59 -6.29 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336031520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.933 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds