Wall clock time and date at job start Mon Mar 30 2020 03:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.87118 * 2 1 4 4 C 1.54316 * 109.88363 * 121.01301 * 2 1 3 5 5 H 1.09003 * 110.72351 * 215.58842 * 4 2 1 6 6 O 1.42901 * 110.87509 * 338.79665 * 4 2 1 7 7 C 1.55158 * 102.94139 * 97.22645 * 4 2 1 8 8 C 1.54917 * 101.57978 * 35.50252 * 7 4 2 9 9 N 1.47020 * 109.88277 * 238.82772 * 2 1 3 10 10 C 1.34776 * 125.65281 * 59.55634 * 9 2 1 11 11 O 1.21285 * 119.99841 * 359.97438 * 10 9 2 12 12 C 1.50699 * 120.00365 * 179.97438 * 10 9 2 13 13 C 1.52995 * 109.47186 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46890 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00394 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99756 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00213 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47082 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46967 * 119.99780 * 18 16 14 21 21 H 1.48496 * 109.47213 * 239.99777 * 18 16 14 22 22 H 1.08996 * 109.47027 * 298.98400 * 1 2 3 23 23 H 1.08999 * 109.47118 * 58.98566 * 1 2 3 24 24 H 1.08995 * 109.46824 * 178.98286 * 1 2 3 25 25 H 1.09004 * 109.47143 * 181.01679 * 3 2 1 26 26 H 1.09003 * 109.47335 * 301.01839 * 3 2 1 27 27 H 1.08997 * 109.47552 * 61.01820 * 3 2 1 28 28 H 0.96696 * 113.99898 * 175.06210 * 6 4 2 29 29 H 1.08998 * 111.00511 * 277.42784 * 7 4 2 30 30 H 1.08996 * 111.04098 * 153.59117 * 7 4 2 31 31 H 1.08998 * 110.36726 * 81.82993 * 8 7 4 32 32 H 1.09005 * 110.36534 * 204.15515 * 8 7 4 33 33 H 1.09004 * 109.47135 * 299.99842 * 12 10 9 34 34 H 1.08993 * 109.47035 * 59.99497 * 12 10 9 35 35 H 1.08995 * 109.47224 * 299.99440 * 13 12 10 36 36 H 1.08993 * 109.47602 * 59.99773 * 13 12 10 37 37 H 0.96997 * 120.00099 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9657 -0.2808 1.6186 6 8 1.0575 -0.7987 2.2658 7 6 2.3520 -2.1684 0.6954 8 6 2.8569 -1.8507 -0.7343 9 7 2.0301 -0.7156 -1.1829 10 6 1.7754 -0.3879 -2.4652 11 8 1.0785 0.5718 -2.7189 12 6 2.3566 -1.2137 -3.5838 13 6 1.9179 -0.6313 -4.9288 14 6 2.4996 -1.4568 -6.0474 15 1 3.1205 -2.3111 -5.8216 16 6 2.2400 -1.1208 -7.3592 17 7 1.4843 -0.0801 -7.6343 18 14 2.9617 -2.1436 -8.7457 19 1 3.7701 -3.2509 -8.1750 20 1 1.8620 -2.7066 -9.5696 21 1 3.8272 -1.2861 -9.5947 22 1 -0.3633 0.4980 0.8989 23 1 -0.3633 0.5295 -0.8807 24 1 -0.3633 -1.0275 -0.0182 25 1 3.1400 1.4314 -0.0182 26 1 1.6756 1.9607 -0.8807 27 1 1.7054 1.9499 0.8989 28 1 1.3117 -1.3227 3.0377 29 1 1.4453 -2.7727 0.6643 30 1 3.1269 -2.6606 1.2830 31 1 3.9092 -1.5675 -0.7107 32 1 2.7089 -2.7099 -1.3886 33 1 3.4446 -1.1985 -3.5192 34 1 2.0020 -2.2409 -3.4991 35 1 0.8300 -0.6462 -4.9937 36 1 2.2728 0.3958 -5.0132 37 1 1.3014 0.1561 -8.5571 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336031520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:50 Heat of formation + Delta-G solvation = -121.851567 kcal Electronic energy + Delta-G solvation = -17994.445105 eV Core-core repulsion = 15156.221304 eV Total energy + Delta-G solvation = -2838.223801 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.55222 -39.20599 -36.52437 -35.61087 -33.92581 -32.73055 -31.54220 -28.33402 -27.69878 -26.05172 -24.35054 -23.09579 -21.29715 -19.46842 -18.64428 -18.29863 -17.45596 -16.75352 -16.57438 -16.32104 -15.42493 -15.39071 -14.88533 -14.58054 -14.36401 -14.22288 -13.86832 -13.78976 -13.20800 -13.03062 -12.83921 -12.83488 -12.60598 -12.47393 -12.40650 -12.12744 -11.93619 -11.64153 -11.44539 -11.28061 -10.83786 -10.58803 -10.56799 -9.65283 -8.18825 -6.33302 1.41674 1.43494 1.56763 1.70736 1.93510 2.42676 3.14264 3.17828 3.52934 3.60525 3.95965 4.01485 4.12658 4.25009 4.41146 4.44848 4.49246 4.53669 4.67665 4.69852 4.78513 4.87412 4.89324 5.00260 5.03757 5.19876 5.22999 5.34367 5.47224 5.59830 5.60827 5.83671 6.16092 6.53621 6.85381 6.97497 7.28822 7.37338 8.94290 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.005063 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.489471 B = 5529.497469 C = 5876.379542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.152 3.848 3 C -0.151 4.151 4 C 0.113 3.887 5 H 0.097 0.903 6 O -0.567 6.567 7 C -0.153 4.153 8 C 0.088 3.912 9 N -0.616 5.616 10 C 0.524 3.476 11 O -0.581 6.581 12 C -0.111 4.111 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.251 1.251 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.401 0.599 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.099 0.901 35 H -0.020 1.020 36 H -0.019 1.019 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -6.626 22.179 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 C -0.209 4.209 4 C 0.053 3.947 5 H 0.115 0.885 6 O -0.376 6.376 7 C -0.190 4.190 8 C -0.034 4.034 9 N -0.351 5.351 10 C 0.315 3.685 11 O -0.460 6.460 12 C -0.150 4.150 13 C 0.006 3.994 14 C -0.579 4.579 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.175 1.175 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.252 0.748 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.117 0.883 35 H -0.002 1.002 36 H 0.000 1.000 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.889 -5.645 21.432 22.696 hybrid contribution 0.059 -0.169 -0.901 0.919 sum 4.948 -5.813 20.531 21.904 Atomic orbital electron populations 1.21760 0.94915 1.01390 1.01129 1.20998 0.94527 0.92491 0.85250 1.22088 1.01346 0.95324 1.02138 1.22645 0.90689 0.94892 0.86438 0.88543 1.86485 1.43611 1.76239 1.31290 1.23513 1.03565 0.97059 0.94912 1.22623 0.95543 0.88692 0.96530 1.48717 1.51339 1.31209 1.03880 1.21042 0.79657 0.84597 0.83228 1.90633 1.40376 1.31029 1.83967 1.21586 1.01995 0.99477 0.91966 1.18682 0.94533 0.94703 0.91478 1.21722 1.31228 1.13389 0.91593 0.90561 1.26159 0.95478 0.96438 1.02366 1.70194 1.39249 1.28606 1.19844 0.85247 0.78134 0.78652 0.78044 1.17470 1.20630 1.20575 0.90371 0.95276 0.93149 0.91461 0.94689 0.89999 0.74778 0.90305 0.85698 0.89117 0.89459 0.88064 0.88306 1.00175 1.00007 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.78 71.98 0.56 -3.56 16 2 C 0.15 4.07 0.82 3.95 0.00 4.07 16 3 C -0.15 -4.16 8.41 71.98 0.61 -3.56 16 4 C 0.11 1.82 3.71 31.78 0.12 1.94 16 5 H 0.10 1.16 7.85 -2.39 -0.02 1.15 16 6 O -0.57 -8.47 11.79 -148.98 -1.76 -10.22 16 7 C -0.15 -1.96 6.80 31.99 0.22 -1.74 16 8 C 0.09 1.68 6.69 86.86 0.58 2.27 16 9 N -0.62 -18.60 2.82 -765.25 -2.16 -20.76 16 10 C 0.52 21.82 7.43 87.66 0.65 22.47 16 11 O -0.58 -29.98 13.62 -3.05 -0.04 -30.02 16 12 C -0.11 -4.67 4.64 29.85 0.14 -4.53 16 13 C 0.04 2.51 4.26 29.85 0.13 2.64 16 14 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 15 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 16 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 17 N -0.94 -60.56 13.29 21.45 0.28 -60.28 16 18 Si 0.98 44.71 29.54 68.60 2.03 46.74 16 19 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H 0.08 2.15 7.50 -2.39 -0.02 2.14 16 23 H 0.03 1.11 6.77 -2.39 -0.02 1.09 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 26 H 0.03 1.25 6.91 -2.39 -0.02 1.23 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.40 1.83 9.11 -74.06 -0.67 1.16 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.62 7.48 -2.38 -0.02 1.61 16 33 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 34 H 0.10 3.72 7.85 -2.39 -0.02 3.70 16 35 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 36 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 37 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -81.21 300.19 2.42 -78.79 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.37 Total: 6.84 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.70 Total: -11.09 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -1.88 Total: -81.04 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.80 Total: -40.24 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -81.21 2.42 -78.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336031520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.066 kcal (2) G-P(sol) polarization free energy of solvation -81.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds