Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99445 * 2 1 4 4 C 1.50697 * 109.47527 * 269.99867 * 3 2 1 5 5 H 1.07999 * 119.99635 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00148 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00110 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00109 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46715 * 60.00079 * 8 6 4 10 10 H 1.48492 * 109.47320 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46819 * 300.00247 * 8 6 4 12 12 C 1.34767 * 120.00164 * 180.02562 * 2 1 3 13 13 O 1.21290 * 119.99995 * 185.34534 * 12 2 1 14 14 C 1.50700 * 120.00569 * 5.34186 * 12 2 1 15 15 H 1.09002 * 110.34724 * 310.45884 * 14 12 2 16 16 C 1.54940 * 110.30840 * 72.59437 * 14 12 2 17 17 C 1.55303 * 100.94208 * 155.36226 * 16 14 12 18 18 C 1.54379 * 102.25371 * 325.86948 * 17 16 14 19 19 C 1.53000 * 109.83247 * 140.86495 * 18 17 16 20 20 C 1.52993 * 109.83357 * 261.74970 * 18 17 16 21 21 O 1.43239 * 107.58971 * 21.35619 * 18 17 16 22 22 H 1.08999 * 109.46903 * 273.74945 * 1 2 3 23 23 H 1.08997 * 109.47352 * 33.75308 * 1 2 3 24 24 H 1.09002 * 109.46692 * 153.75389 * 1 2 3 25 25 H 1.09000 * 109.47010 * 30.00398 * 3 2 1 26 26 H 1.09005 * 109.46994 * 150.00034 * 3 2 1 27 27 H 0.97005 * 120.00130 * 179.97438 * 7 6 4 28 28 H 1.09006 * 111.12604 * 37.45117 * 16 14 12 29 29 H 1.08997 * 111.16537 * 273.30046 * 16 14 12 30 30 H 1.08994 * 110.85291 * 207.67893 * 17 16 14 31 31 H 1.09001 * 111.01883 * 84.13686 * 17 16 14 32 32 H 1.09004 * 109.46973 * 59.99888 * 19 18 17 33 33 H 1.09003 * 109.47378 * 300.00540 * 19 18 17 34 34 H 1.09001 * 109.47422 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47343 * 299.81207 * 20 18 17 36 36 H 1.09008 * 109.47136 * 59.81299 * 20 18 17 37 37 H 1.09003 * 109.47383 * 179.81228 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0975 1.0963 -2.2416 6 6 3.1268 2.8776 -1.6726 7 7 3.5548 3.6173 -0.6730 8 14 3.4375 3.4174 -3.4338 9 1 2.1397 3.5957 -4.1331 10 1 4.1810 4.7027 -3.4338 11 1 4.2393 2.3823 -4.1345 12 6 2.1389 -1.1671 -0.0005 13 8 3.3479 -1.1694 0.0973 14 6 1.3905 -2.4694 -0.1226 15 1 0.5664 -2.5012 0.5902 16 6 0.8596 -2.6512 -1.5668 17 6 0.7399 -4.1977 -1.6444 18 6 1.9270 -4.6623 -0.7737 19 6 1.5156 -5.8784 0.0586 20 6 3.1159 -5.0228 -1.6666 21 8 2.2791 -3.5773 0.0927 22 1 -0.3633 0.0672 1.0255 23 1 -0.3634 0.8544 -0.5710 24 1 -0.3633 -0.9218 -0.4545 25 1 1.6083 2.0284 0.5139 26 1 3.1499 1.1386 0.5139 27 1 4.0323 4.4429 -0.8502 28 1 1.5748 -2.2754 -2.2985 29 1 -0.1130 -2.1751 -1.6914 30 1 0.8531 -4.5445 -2.6715 31 1 -0.2063 -4.5382 -1.2238 32 1 1.2173 -6.6894 -0.6059 33 1 0.6787 -5.6110 0.7037 34 1 2.3575 -6.2012 0.6711 35 1 2.8313 -5.8292 -2.3425 36 1 3.4120 -4.1493 -2.2475 37 1 3.9514 -5.3467 -1.0460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336620750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = -85.166409 kcal Electronic energy + Delta-G solvation = -18184.275046 eV Core-core repulsion = 15347.642033 eV Total energy + Delta-G solvation = -2836.633013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18808 -38.18481 -34.79616 -33.12883 -32.67840 -31.75702 -28.16249 -27.34547 -26.49710 -25.45386 -22.88346 -21.91286 -20.01654 -18.57099 -17.00601 -16.47875 -16.04779 -15.22159 -15.10730 -14.44168 -14.37938 -13.87268 -13.49144 -13.22964 -12.99008 -12.54518 -12.21399 -12.15010 -12.05483 -11.82756 -11.68048 -11.63519 -11.31196 -11.18045 -10.91651 -10.75097 -10.61864 -10.49387 -10.14836 -9.64700 -9.62525 -8.65646 -8.42683 -7.61647 -6.03393 -4.08671 3.31352 3.33071 3.36498 3.38565 3.55709 4.23588 4.43730 4.50305 4.73156 4.85038 5.08320 5.12774 5.15285 5.29997 5.38774 5.48020 5.55101 5.59431 5.66092 5.72028 5.83885 5.88743 5.93474 5.96185 6.12119 6.15228 6.21363 6.34627 7.01041 7.23890 7.47473 7.56346 7.93162 8.24053 8.42415 8.90698 9.12186 9.56362 11.04636 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.006166 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.065831 B = 4540.209141 C = 4760.264517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.601 5.601 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.523 6.523 14 C 0.065 3.935 15 H 0.085 0.915 16 C -0.143 4.143 17 C -0.144 4.144 18 C 0.096 3.904 19 C -0.152 4.152 20 C -0.152 4.152 21 O -0.344 6.344 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.477 -15.384 -1.229 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.335 5.335 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.399 6.399 14 C 0.004 3.996 15 H 0.103 0.897 16 C -0.181 4.181 17 C -0.182 4.182 18 C 0.057 3.943 19 C -0.209 4.209 20 C -0.210 4.210 21 O -0.262 6.262 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.544 -15.200 -0.975 17.463 hybrid contribution -0.089 0.466 -1.106 1.204 sum -8.632 -14.734 -2.081 17.203 Atomic orbital electron populations 1.21774 0.81607 1.02491 1.00802 1.48073 1.06072 1.07471 1.71903 1.19297 0.92707 0.77851 0.97493 1.21392 1.36713 1.06359 0.92240 0.92546 1.24934 0.95329 0.96379 0.97416 1.69926 1.38194 1.14381 1.30785 0.86561 0.78339 0.77866 0.84670 1.20245 1.21125 1.20204 1.20120 0.88120 0.84551 0.78131 1.90678 1.13983 1.86791 1.48447 1.22865 0.92141 0.87416 0.97210 0.89699 1.23246 1.02779 0.95900 0.96191 1.23211 0.98460 0.95434 1.01078 1.22124 0.94224 0.87989 0.89980 1.22091 1.01908 0.96764 1.00144 1.22062 0.97974 1.01707 0.99213 1.88557 1.54963 1.22518 1.60210 0.93607 0.90747 0.92246 0.94881 0.93698 0.92632 0.89531 0.89109 0.89837 0.90343 0.91675 0.92264 0.91871 0.91878 0.91788 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.14 59.85 0.61 1.83 16 2 N -0.60 -13.13 2.86 -182.95 -0.52 -13.65 16 3 C 0.25 6.58 5.22 -5.19 -0.03 6.55 16 4 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.51 11.29 7.01 -10.99 -0.08 11.21 16 13 O -0.52 -14.36 16.12 -13.65 -0.22 -14.58 16 14 C 0.06 1.09 2.89 -26.86 -0.08 1.01 16 15 H 0.09 1.20 7.51 -51.93 -0.39 0.81 16 16 C -0.14 -1.95 6.05 -24.49 -0.15 -2.10 16 17 C -0.14 -1.56 6.09 -24.79 -0.15 -1.71 16 18 C 0.10 1.25 1.27 -89.90 -0.11 1.14 16 19 C -0.15 -1.57 8.74 37.16 0.32 -1.25 16 20 C -0.15 -1.91 8.73 37.15 0.32 -1.59 16 21 O -0.34 -6.10 9.94 -54.43 -0.54 -6.64 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 24 H 0.06 0.75 4.46 -51.93 -0.23 0.52 16 25 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 26 H 0.04 1.37 7.36 -51.93 -0.38 0.98 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 29 H 0.09 1.03 6.49 -51.93 -0.34 0.69 16 30 H 0.08 0.78 7.82 -51.93 -0.41 0.38 16 31 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -34.47 302.87 -6.68 -41.15 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.92 Total: -2.97 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 0.24 Total: 1.34 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.21 Total: -39.77 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.76 Total: -21.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.47 -6.68 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336620750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.018 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds