Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99445 * 2 1 4 4 C 1.50697 * 109.47527 * 269.99867 * 3 2 1 5 5 H 1.07999 * 119.99635 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00148 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00110 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00109 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46715 * 60.00079 * 8 6 4 10 10 H 1.48492 * 109.47320 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46819 * 300.00247 * 8 6 4 12 12 C 1.34767 * 120.00164 * 180.02562 * 2 1 3 13 13 O 1.21290 * 119.99995 * 185.34534 * 12 2 1 14 14 C 1.50700 * 120.00569 * 5.34186 * 12 2 1 15 15 H 1.09002 * 110.34724 * 310.45884 * 14 12 2 16 16 C 1.54940 * 110.30840 * 72.59437 * 14 12 2 17 17 C 1.55303 * 100.94208 * 155.36226 * 16 14 12 18 18 C 1.54379 * 102.25371 * 325.86948 * 17 16 14 19 19 C 1.53000 * 109.83247 * 140.86495 * 18 17 16 20 20 C 1.52993 * 109.83357 * 261.74970 * 18 17 16 21 21 O 1.43239 * 107.58971 * 21.35619 * 18 17 16 22 22 H 1.08999 * 109.46903 * 273.74945 * 1 2 3 23 23 H 1.08997 * 109.47352 * 33.75308 * 1 2 3 24 24 H 1.09002 * 109.46692 * 153.75389 * 1 2 3 25 25 H 1.09000 * 109.47010 * 30.00398 * 3 2 1 26 26 H 1.09005 * 109.46994 * 150.00034 * 3 2 1 27 27 H 0.97005 * 120.00130 * 179.97438 * 7 6 4 28 28 H 1.09006 * 111.12604 * 37.45117 * 16 14 12 29 29 H 1.08997 * 111.16537 * 273.30046 * 16 14 12 30 30 H 1.08994 * 110.85291 * 207.67893 * 17 16 14 31 31 H 1.09001 * 111.01883 * 84.13686 * 17 16 14 32 32 H 1.09004 * 109.46973 * 59.99888 * 19 18 17 33 33 H 1.09003 * 109.47378 * 300.00540 * 19 18 17 34 34 H 1.09001 * 109.47422 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47343 * 299.81207 * 20 18 17 36 36 H 1.09008 * 109.47136 * 59.81299 * 20 18 17 37 37 H 1.09003 * 109.47383 * 179.81228 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0975 1.0963 -2.2416 6 6 3.1268 2.8776 -1.6726 7 7 3.5548 3.6173 -0.6730 8 14 3.4375 3.4174 -3.4338 9 1 2.1397 3.5957 -4.1331 10 1 4.1810 4.7027 -3.4338 11 1 4.2393 2.3823 -4.1345 12 6 2.1389 -1.1671 -0.0005 13 8 3.3479 -1.1694 0.0973 14 6 1.3905 -2.4694 -0.1226 15 1 0.5664 -2.5012 0.5902 16 6 0.8596 -2.6512 -1.5668 17 6 0.7399 -4.1977 -1.6444 18 6 1.9270 -4.6623 -0.7737 19 6 1.5156 -5.8784 0.0586 20 6 3.1159 -5.0228 -1.6666 21 8 2.2791 -3.5773 0.0927 22 1 -0.3633 0.0672 1.0255 23 1 -0.3634 0.8544 -0.5710 24 1 -0.3633 -0.9218 -0.4545 25 1 1.6083 2.0284 0.5139 26 1 3.1499 1.1386 0.5139 27 1 4.0323 4.4429 -0.8502 28 1 1.5748 -2.2754 -2.2985 29 1 -0.1130 -2.1751 -1.6914 30 1 0.8531 -4.5445 -2.6715 31 1 -0.2063 -4.5382 -1.2238 32 1 1.2173 -6.6894 -0.6059 33 1 0.6787 -5.6110 0.7037 34 1 2.3575 -6.2012 0.6711 35 1 2.8313 -5.8292 -2.3425 36 1 3.4120 -4.1493 -2.2475 37 1 3.9514 -5.3467 -1.0460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336620750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = -108.646210 kcal Electronic energy + Delta-G solvation = -18185.293207 eV Core-core repulsion = 15347.642033 eV Total energy + Delta-G solvation = -2837.651173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49800 -39.74288 -36.65047 -34.83719 -34.13496 -32.99196 -30.03075 -28.22819 -27.85974 -27.06980 -24.69579 -23.15881 -21.06275 -20.19422 -18.69629 -18.37497 -17.52178 -16.87035 -16.36761 -16.12356 -16.03162 -15.09738 -14.60107 -14.53590 -14.26564 -14.07938 -13.81833 -13.53683 -13.25269 -13.16388 -13.00136 -12.92416 -12.72517 -12.60325 -12.54036 -12.40587 -12.18950 -11.76890 -11.71255 -11.47471 -10.90932 -10.66073 -10.28415 -9.45851 -8.24011 -6.39708 1.35271 1.40284 1.47461 1.70959 2.05716 2.38255 2.96692 3.05556 3.41546 3.65791 3.83444 3.96832 4.06547 4.15048 4.25922 4.36864 4.60801 4.69592 4.72345 4.76746 4.84905 4.88156 4.94669 4.98586 5.00044 5.06649 5.12135 5.20049 5.29419 5.42510 5.52785 5.80029 6.03020 6.12608 6.67246 6.73103 7.25214 7.42769 8.83343 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.006166 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.065831 B = 4540.209141 C = 4760.264517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.605 5.605 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.256 1.256 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.492 3.508 13 O -0.594 6.594 14 C 0.073 3.927 15 H 0.122 0.878 16 C -0.142 4.142 17 C -0.129 4.129 18 C 0.080 3.920 19 C -0.146 4.146 20 C -0.153 4.153 21 O -0.383 6.383 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.027 0.973 26 H -0.007 1.007 27 H 0.268 0.732 28 H 0.054 0.946 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.374 -17.113 -2.841 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.337 5.337 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.180 1.180 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.280 3.720 13 O -0.474 6.474 14 C 0.012 3.988 15 H 0.139 0.861 16 C -0.180 4.180 17 C -0.167 4.167 18 C 0.041 3.959 19 C -0.203 4.203 20 C -0.211 4.211 21 O -0.303 6.303 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.045 0.955 26 H 0.011 0.989 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.510 -16.947 -2.586 20.649 hybrid contribution 0.844 0.980 -0.545 1.404 sum -10.666 -15.967 -3.131 19.455 Atomic orbital electron populations 1.22127 0.77560 1.04556 1.02899 1.48090 1.08563 1.05845 1.71231 1.18785 0.91071 0.80191 0.96311 1.21664 1.37153 1.06686 0.92821 0.92559 1.25908 0.94771 0.96372 1.02203 1.70057 1.38726 1.14845 1.33259 0.85437 0.79006 0.77311 0.78876 1.17995 1.20302 1.20474 1.21346 0.87788 0.86542 0.76327 1.90629 1.17254 1.87987 1.51563 1.22905 0.91605 0.84018 1.00258 0.86081 1.23282 1.03098 0.98622 0.92960 1.23238 0.98797 0.92624 1.01999 1.22542 0.95200 0.87729 0.90408 1.22065 1.01699 0.96180 1.00332 1.22114 0.97978 1.01598 0.99384 1.88537 1.56327 1.23765 1.61631 0.91134 0.90971 0.88218 0.95460 0.98905 0.92344 0.92680 0.85983 0.87935 0.86947 0.88686 0.91381 0.93122 0.88354 0.94598 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 10.14 127.77 1.30 3.37 16 2 N -0.60 -26.82 2.86 -851.11 -2.43 -29.25 16 3 C 0.26 14.48 5.22 85.63 0.45 14.93 16 4 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 5 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -57.40 13.29 21.44 0.28 -57.12 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.49 22.55 7.01 87.66 0.61 23.17 16 13 O -0.59 -34.77 16.12 15.30 0.25 -34.52 16 14 C 0.07 2.33 2.89 30.51 0.09 2.42 16 15 H 0.12 2.99 7.51 -2.39 -0.02 2.97 16 16 C -0.14 -3.48 6.05 32.05 0.19 -3.28 16 17 C -0.13 -2.25 6.09 31.85 0.19 -2.06 16 18 C 0.08 1.90 1.27 -10.33 -0.01 1.89 16 19 C -0.15 -2.54 8.74 71.98 0.63 -1.91 16 20 C -0.15 -3.72 8.73 71.98 0.63 -3.09 16 21 O -0.38 -13.45 9.94 -130.62 -1.30 -14.75 16 22 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 24 H 0.10 2.11 4.46 -2.39 -0.01 2.10 16 25 H 0.03 1.53 8.07 -2.39 -0.02 1.52 16 26 H -0.01 -0.47 7.36 -2.38 -0.02 -0.49 16 27 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 28 H 0.05 1.70 8.05 -2.38 -0.02 1.68 16 29 H 0.12 2.17 6.49 -2.39 -0.02 2.16 16 30 H 0.10 1.44 7.82 -2.39 -0.02 1.42 16 31 H 0.11 1.27 7.85 -2.39 -0.02 1.25 16 32 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -81.55 302.87 4.64 -76.90 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.03 Total: 6.94 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 4.78 Total: 4.48 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.15 Total: -86.37 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -1.05 Total: -49.27 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -81.55 4.64 -76.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336620750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.743 kcal (2) G-P(sol) polarization free energy of solvation -81.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds