Wall clock time and date at job start Mon Mar 30 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47107 * 240.00109 * 3 2 1 5 5 H 1.48504 * 109.46886 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47393 * 119.99807 * 3 2 1 7 7 C 1.37876 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47293 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46989 * 180.02562 * 11 10 9 13 13 C 1.47006 * 110.99988 * 189.99822 * 12 11 10 14 14 C 1.53158 * 109.24141 * 182.16922 * 13 12 11 15 15 H 1.09001 * 109.69122 * 181.67297 * 14 13 12 16 16 C 1.53195 * 109.20388 * 61.42402 * 14 13 12 17 17 O 1.43064 * 109.13024 * 296.08494 * 16 14 13 18 18 C 1.43070 * 113.67519 * 302.29129 * 17 16 14 19 19 C 1.53199 * 109.13149 * 57.70296 * 18 17 16 20 20 H 1.09002 * 109.69083 * 184.17171 * 19 18 17 21 21 C 1.52053 * 111.63352 * 314.17004 * 12 11 10 22 22 O 1.43257 * 108.90275 * 304.23267 * 19 18 17 23 23 H 0.96999 * 120.00074 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47293 * 60.00477 * 9 7 2 25 25 H 1.09006 * 109.47497 * 300.00394 * 9 7 2 26 26 H 1.09001 * 109.47218 * 60.00106 * 10 9 7 27 27 H 1.08996 * 109.47265 * 300.00076 * 10 9 7 28 28 H 1.09001 * 109.47146 * 59.99764 * 11 10 9 29 29 H 1.09008 * 109.46612 * 299.99657 * 11 10 9 30 30 H 1.09000 * 109.51110 * 62.23853 * 13 12 11 31 31 H 1.08999 * 109.54748 * 302.12358 * 13 12 11 32 32 H 1.09005 * 109.52801 * 176.18566 * 16 14 13 33 33 H 1.09004 * 109.52717 * 55.98341 * 16 14 13 34 34 H 1.08995 * 109.52544 * 297.80355 * 18 17 16 35 35 H 1.08997 * 109.58085 * 177.63224 * 18 17 16 36 36 H 1.08999 * 110.17276 * 58.68912 * 21 12 11 37 37 H 1.08996 * 109.56863 * 298.10056 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4348 -6.1036 0.0049 13 6 1.7501 -7.3825 -0.2328 14 6 2.7719 -8.5216 -0.1691 15 1 2.2769 -9.4709 -0.3739 16 6 3.4001 -8.5575 1.2276 17 8 4.1279 -7.3452 1.4457 18 6 5.1497 -7.1058 0.4734 19 6 4.5176 -7.0733 -0.9218 20 1 5.2973 -6.9653 -1.6758 21 6 3.5484 -5.8905 -1.0083 22 8 3.8043 -8.2969 -1.1367 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6051 -0.8872 28 1 0.8538 -5.0453 -0.8869 29 1 0.8533 -5.0442 0.8932 30 1 1.2824 -7.3676 -1.2173 31 1 0.9869 -7.5350 0.5304 32 1 4.0783 -9.4078 1.3004 33 1 2.6150 -8.6512 1.9780 34 1 5.8905 -7.9040 0.5193 35 1 5.6313 -6.1495 0.6775 36 1 4.0825 -4.9656 -0.7908 37 1 3.1247 -5.8397 -2.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338382518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:46 Heat of formation + Delta-G solvation = -81.823240 kcal Electronic energy + Delta-G solvation = -18176.860609 eV Core-core repulsion = 15340.372567 eV Total energy + Delta-G solvation = -2836.488042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64520 -36.61550 -35.68512 -33.48947 -32.91585 -31.26695 -28.50415 -26.74703 -26.22963 -24.20465 -23.23288 -21.83154 -19.86009 -18.87367 -16.98373 -16.66007 -16.20187 -15.68352 -15.35687 -15.31058 -14.58838 -14.49230 -14.27718 -13.49375 -13.31848 -12.90698 -12.39453 -12.20118 -12.03892 -11.77460 -11.47649 -11.31365 -11.17028 -10.80528 -10.55271 -10.41585 -10.32972 -10.07048 -9.61819 -9.31434 -9.12444 -9.00257 -8.31911 -7.88195 -5.97355 -3.99528 3.35017 3.39149 3.41741 3.60538 3.81077 4.12180 4.48354 4.57989 4.75184 4.87714 4.93755 5.01522 5.24734 5.38339 5.39944 5.47412 5.52920 5.55272 5.68229 5.75083 5.85962 5.91653 5.95330 6.01376 6.32844 6.70826 6.79850 6.94888 7.04957 7.22041 7.27935 7.39884 7.70190 7.85874 8.02879 8.46089 9.07330 9.64259 11.14117 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044055 B = 0.004936 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.415996 B = 5671.205943 C = 5902.941001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C 0.057 3.943 12 N -0.518 5.518 13 C 0.029 3.971 14 C 0.053 3.947 15 H 0.110 0.890 16 C 0.043 3.957 17 O -0.343 6.343 18 C 0.043 3.957 19 C 0.052 3.948 20 H 0.112 0.888 21 C 0.024 3.976 22 O -0.373 6.373 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -17.681 -0.427 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.243 5.243 13 C -0.100 4.100 14 C -0.005 4.005 15 H 0.128 0.872 16 C -0.035 4.035 17 O -0.261 6.261 18 C -0.035 4.035 19 C -0.006 4.006 20 H 0.130 0.870 21 C -0.103 4.103 22 O -0.292 6.292 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.258 -17.581 0.051 19.020 hybrid contribution -0.083 0.990 -0.933 1.363 sum 7.174 -16.591 -0.882 18.098 Atomic orbital electron populations 1.69954 1.06070 1.26653 1.50935 1.25023 0.94836 0.99226 0.95378 0.86661 0.79583 0.83167 0.78601 1.20303 1.21308 1.20206 1.21206 0.92964 0.91070 1.50478 0.92781 1.19063 0.94017 0.91359 0.97076 1.21732 0.99291 0.92980 1.00629 1.22300 0.93923 0.90743 1.00031 1.63565 1.12149 1.01304 1.47309 1.22643 0.96142 0.90743 1.00440 1.23006 0.88795 0.98725 0.89948 0.87222 1.23007 0.96241 0.87746 0.96479 1.88215 1.48844 1.40479 1.48544 1.23033 0.89967 1.02025 0.88460 1.23063 0.94562 0.84614 0.98374 0.87017 1.23588 0.93887 0.98567 0.94242 1.88205 1.48954 1.40102 1.51938 0.92990 0.96910 0.96565 0.92425 0.93495 0.95692 0.90940 0.94536 0.89761 0.93301 0.88269 0.93304 0.87962 0.88361 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.29 4.47 -26.73 -0.12 -2.41 16 11 C 0.06 1.04 5.33 -3.82 -0.02 1.02 16 12 N -0.52 -8.14 3.39 -229.68 -0.78 -8.92 16 13 C 0.03 0.39 5.09 -3.68 -0.02 0.37 16 14 C 0.05 0.62 3.98 -26.55 -0.11 0.51 16 15 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.04 0.48 6.43 37.26 0.24 0.72 16 17 O -0.34 -4.85 9.33 -48.77 -0.45 -5.31 16 18 C 0.04 0.51 6.44 37.26 0.24 0.75 16 19 C 0.05 0.64 3.98 -26.55 -0.11 0.53 16 20 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 21 C 0.02 0.35 4.59 -0.80 0.00 0.35 16 22 O -0.37 -4.93 10.61 -48.77 -0.52 -5.44 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.96 6.33 -51.93 -0.33 0.63 16 28 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.46 6.33 -51.93 -0.33 1.14 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 289.96 15.07 4.37 4.37 Total: -1.00 -31.91 289.96 -8.22 -40.14 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.11 Total: -3.72 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.44 Total: -11.40 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.04 Total: -35.51 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.97 Total: -10.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.91 -8.22 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338382518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.685 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds