Wall clock time and date at job start Mon Mar 30 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47107 * 240.00109 * 3 2 1 5 5 H 1.48504 * 109.46886 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47393 * 119.99807 * 3 2 1 7 7 C 1.37876 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47293 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46989 * 180.02562 * 11 10 9 13 13 C 1.47006 * 110.99988 * 189.99822 * 12 11 10 14 14 C 1.53158 * 109.24141 * 182.16922 * 13 12 11 15 15 H 1.09001 * 109.69122 * 181.67297 * 14 13 12 16 16 C 1.53195 * 109.20388 * 61.42402 * 14 13 12 17 17 O 1.43064 * 109.13024 * 296.08494 * 16 14 13 18 18 C 1.43070 * 113.67519 * 302.29129 * 17 16 14 19 19 C 1.53199 * 109.13149 * 57.70296 * 18 17 16 20 20 H 1.09002 * 109.69083 * 184.17171 * 19 18 17 21 21 C 1.52053 * 111.63352 * 314.17004 * 12 11 10 22 22 O 1.43257 * 108.90275 * 304.23267 * 19 18 17 23 23 H 0.96999 * 120.00074 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47293 * 60.00477 * 9 7 2 25 25 H 1.09006 * 109.47497 * 300.00394 * 9 7 2 26 26 H 1.09001 * 109.47218 * 60.00106 * 10 9 7 27 27 H 1.08996 * 109.47265 * 300.00076 * 10 9 7 28 28 H 1.09001 * 109.47146 * 59.99764 * 11 10 9 29 29 H 1.09008 * 109.46612 * 299.99657 * 11 10 9 30 30 H 1.09000 * 109.51110 * 62.23853 * 13 12 11 31 31 H 1.08999 * 109.54748 * 302.12358 * 13 12 11 32 32 H 1.09005 * 109.52801 * 176.18566 * 16 14 13 33 33 H 1.09004 * 109.52717 * 55.98341 * 16 14 13 34 34 H 1.08995 * 109.52544 * 297.80355 * 18 17 16 35 35 H 1.08997 * 109.58085 * 177.63224 * 18 17 16 36 36 H 1.08999 * 110.17276 * 58.68912 * 21 12 11 37 37 H 1.08996 * 109.56863 * 298.10056 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4348 -6.1036 0.0049 13 6 1.7501 -7.3825 -0.2328 14 6 2.7719 -8.5216 -0.1691 15 1 2.2769 -9.4709 -0.3739 16 6 3.4001 -8.5575 1.2276 17 8 4.1279 -7.3452 1.4457 18 6 5.1497 -7.1058 0.4734 19 6 4.5176 -7.0733 -0.9218 20 1 5.2973 -6.9653 -1.6758 21 6 3.5484 -5.8905 -1.0083 22 8 3.8043 -8.2969 -1.1367 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6051 -0.8872 28 1 0.8538 -5.0453 -0.8869 29 1 0.8533 -5.0442 0.8932 30 1 1.2824 -7.3676 -1.2173 31 1 0.9869 -7.5350 0.5304 32 1 4.0783 -9.4078 1.3004 33 1 2.6150 -8.6512 1.9780 34 1 5.8905 -7.9040 0.5193 35 1 5.6313 -6.1495 0.6775 36 1 4.0825 -4.9656 -0.7908 37 1 3.1247 -5.8397 -2.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338382518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:46 Heat of formation + Delta-G solvation = -103.340551 kcal Electronic energy + Delta-G solvation = -18177.793670 eV Core-core repulsion = 15340.372567 eV Total energy + Delta-G solvation = -2837.421103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63143 -37.89646 -36.78881 -35.41199 -33.95000 -33.08224 -29.83773 -28.04373 -27.53287 -25.67878 -24.31214 -23.44265 -21.55917 -19.87162 -18.54307 -17.84420 -17.61009 -16.77727 -16.58251 -16.38956 -16.26240 -15.94133 -15.45056 -14.82890 -14.67073 -14.22350 -13.90876 -13.75258 -13.25879 -13.06431 -12.96152 -12.82228 -12.66326 -12.45237 -12.17355 -11.95203 -11.55078 -11.37043 -11.33783 -11.19649 -10.89387 -10.55221 -10.08686 -9.11101 -8.20388 -6.31846 1.39814 1.43296 1.51183 2.40645 2.62144 2.81522 3.11448 3.12689 3.66080 3.78264 3.88512 3.97988 4.04966 4.25091 4.27546 4.38611 4.52370 4.56563 4.63247 4.67528 4.70809 4.73347 4.75433 4.82112 4.94965 5.03005 5.12274 5.21677 5.49755 5.71637 5.83722 5.91485 6.02059 6.07988 6.26053 6.34626 6.84538 7.37461 8.91520 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044055 B = 0.004936 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.415996 B = 5671.205943 C = 5902.941001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.069 3.931 12 N -0.522 5.522 13 C 0.025 3.975 14 C 0.054 3.946 15 H 0.139 0.861 16 C 0.040 3.960 17 O -0.373 6.373 18 C 0.041 3.959 19 C 0.055 3.945 20 H 0.136 0.864 21 C 0.021 3.979 22 O -0.383 6.383 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.009 1.009 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -18.459 -0.446 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.248 5.248 13 C -0.103 4.103 14 C -0.003 4.003 15 H 0.157 0.843 16 C -0.037 4.037 17 O -0.291 6.291 18 C -0.036 4.036 19 C -0.003 4.003 20 H 0.153 0.847 21 C -0.106 4.106 22 O -0.302 6.302 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.009 0.991 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.795 -18.384 0.030 20.379 hybrid contribution -0.596 1.187 -0.928 1.621 sum 8.199 -17.197 -0.899 19.072 Atomic orbital electron populations 1.70094 1.07873 1.27861 1.51646 1.26002 0.95775 1.03437 0.94642 0.85483 0.78271 0.77955 0.79238 1.19085 1.20780 1.19121 1.21649 0.93530 0.92312 1.50649 0.92169 1.18963 0.94388 0.93191 0.94581 1.21451 0.98031 0.92690 1.00586 1.22029 0.93901 0.90488 0.99516 1.63540 1.11832 1.01328 1.48073 1.22780 0.96995 0.90102 1.00428 1.23180 0.88102 0.98980 0.90088 0.84345 1.23167 0.96720 0.87381 0.96427 1.88167 1.49615 1.41879 1.49477 1.23128 0.89916 1.02907 0.87665 1.23143 0.94272 0.83311 0.99558 0.84704 1.23648 0.93926 0.99693 0.93323 1.88197 1.49290 1.40123 1.52591 0.92755 0.99378 0.99108 0.92872 0.92910 0.96394 0.91403 0.95163 0.88747 0.91573 0.87267 0.91412 0.87823 0.89124 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.86 4.47 30.60 0.14 -3.72 16 11 C 0.07 2.52 5.33 86.30 0.46 2.98 16 12 N -0.52 -16.08 3.39 -880.57 -2.99 -19.07 16 13 C 0.03 0.64 5.09 86.34 0.44 1.08 16 14 C 0.05 1.12 3.98 30.71 0.12 1.24 16 15 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 16 C 0.04 0.80 6.43 72.05 0.46 1.27 16 17 O -0.37 -9.86 9.33 -136.04 -1.27 -11.13 16 18 C 0.04 0.89 6.44 72.05 0.46 1.36 16 19 C 0.05 1.24 3.98 30.71 0.12 1.36 16 20 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 21 C 0.02 0.60 4.59 85.33 0.39 0.99 16 22 O -0.38 -9.16 10.61 -136.04 -1.44 -10.60 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 27 H 0.05 2.18 6.33 -2.39 -0.02 2.17 16 28 H 0.02 0.67 8.08 -2.39 -0.02 0.65 16 29 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.66 6.33 -2.39 -0.02 2.64 16 37 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -68.34 289.96 1.08 -67.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.03 Total: 7.23 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.44 Total: -22.87 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.70 Total: -76.70 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -2.71 Total: -21.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.34 1.08 -67.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338382518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.084 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds