Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99893 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47073 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47355 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.74768 * 57.02074 * 16 15 14 18 18 C 1.55308 * 110.84767 * 180.71323 * 16 15 14 19 19 C 1.54945 * 100.93966 * 152.32711 * 18 16 15 20 20 O 1.43648 * 105.13540 * 323.55426 * 19 18 16 21 21 C 1.43236 * 109.97065 * 24.42822 * 20 19 18 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 0.96991 * 119.99641 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46901 * 299.99583 * 14 13 11 29 29 H 1.08998 * 109.47473 * 60.00153 * 14 13 11 30 30 H 1.08999 * 109.47071 * 300.00336 * 15 14 13 31 31 H 1.09005 * 109.47338 * 59.99380 * 15 14 13 32 32 H 1.08999 * 111.12384 * 270.24417 * 18 16 15 33 33 H 1.08993 * 111.12464 * 34.40561 * 18 16 15 34 34 H 1.08996 * 110.30636 * 204.63831 * 19 18 16 35 35 H 1.09006 * 110.31031 * 82.47179 * 19 18 16 36 36 H 1.08998 * 109.83112 * 238.76907 * 21 20 19 37 37 H 1.09005 * 109.82772 * 117.80067 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 6 2.4273 -8.5661 -0.0014 16 6 1.6623 -9.8911 -0.0007 17 1 0.9878 -9.9480 -0.8551 18 6 2.6428 -11.0954 0.0162 19 6 1.7768 -12.1698 0.7209 20 8 1.0190 -11.4523 1.7081 21 6 0.8899 -10.0789 1.3226 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 3.1355 -6.1344 -0.0006 28 1 0.8068 -7.4610 0.8900 29 1 0.8061 -7.4608 -0.8900 30 1 3.0533 -8.5080 -0.8918 31 1 3.0547 -8.5087 0.8881 32 1 2.9040 -11.4035 -0.9962 33 1 3.5357 -10.8669 0.5980 34 1 2.4131 -12.9141 1.1997 35 1 1.1085 -12.6470 0.0041 36 1 1.3156 -9.4368 2.0937 37 1 -0.1619 -9.8336 1.1749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360730204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -111.168120 kcal Electronic energy + Delta-G solvation = -16713.436356 eV Core-core repulsion = 13875.675824 eV Total energy + Delta-G solvation = -2837.760532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88888 -39.02732 -35.63452 -33.43773 -33.21362 -31.09293 -30.32228 -27.96810 -25.65738 -23.77169 -22.41926 -21.33317 -20.85529 -19.49815 -17.19660 -16.82867 -16.33092 -15.61753 -15.48832 -15.34947 -14.94670 -14.40361 -14.28441 -13.58779 -13.42528 -13.10965 -12.57869 -12.28247 -12.16142 -11.87821 -11.68896 -11.38045 -11.14438 -11.09134 -10.93754 -10.88591 -10.60923 -9.94256 -9.80881 -9.65682 -9.17866 -9.00652 -8.78392 -8.30916 -5.95159 -3.99699 3.27015 3.34888 3.39164 3.40735 3.47502 3.62135 4.05157 4.38530 4.48349 4.54406 4.75825 4.86701 4.96725 5.00286 5.22630 5.35871 5.38756 5.39538 5.41466 5.52868 5.54574 5.65128 5.78213 5.91956 5.99915 6.23908 6.25367 6.68232 6.73099 6.90609 7.74912 7.87465 7.89278 8.08344 8.39671 8.79346 9.08875 9.63675 11.15798 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.077578 B = 0.003194 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.841349 B = 8764.555183 C = 8951.084872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.746 5.746 14 C 0.116 3.884 15 C -0.120 4.120 16 C -0.119 4.119 17 H 0.089 0.911 18 C -0.152 4.152 19 C 0.050 3.950 20 O -0.387 6.387 21 C 0.051 3.949 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.397 0.603 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -22.417 -0.500 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.400 5.400 14 C -0.008 4.008 15 C -0.158 4.158 16 C -0.139 4.139 17 H 0.108 0.892 18 C -0.189 4.189 19 C -0.027 4.027 20 O -0.306 6.306 21 C -0.025 4.025 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.230 0.770 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.460 -22.368 -0.312 23.285 hybrid contribution 1.017 0.981 -0.256 1.436 sum 7.477 -21.387 -0.568 22.663 Atomic orbital electron populations 1.69991 1.06061 1.26698 1.50102 1.25033 0.94835 0.99233 0.95309 0.86644 0.79535 0.83160 0.78529 1.21280 1.20250 1.20263 1.21193 0.92889 0.91050 1.51513 0.92660 1.18894 0.93185 0.89373 0.98613 1.21864 1.00714 0.91982 1.02450 1.21579 0.88666 0.85695 0.74394 1.90670 1.14510 1.87674 1.48163 1.46204 1.10015 1.05636 1.78178 1.21276 0.94599 0.82635 1.02266 1.21762 0.98153 0.92611 1.03228 1.22683 0.97426 0.94837 0.98909 0.89222 1.23327 0.98803 0.94814 1.01998 1.23365 0.93387 0.94845 0.91062 1.88411 1.74995 1.20987 1.46221 1.23305 1.00411 0.83125 0.95655 0.92886 0.95834 0.95842 0.90267 0.90257 0.76966 0.91778 0.91828 0.90688 0.90844 0.89787 0.90105 0.89822 0.92201 0.90829 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 11 C 0.51 9.83 7.83 -10.98 -0.09 9.74 16 12 O -0.53 -12.79 15.98 5.56 0.09 -12.71 16 13 N -0.75 -10.21 5.56 -60.29 -0.33 -10.55 16 14 C 0.12 1.37 5.52 -4.04 -0.02 1.35 16 15 C -0.12 -0.95 4.72 -26.73 -0.13 -1.07 16 16 C -0.12 -0.91 3.03 -88.68 -0.27 -1.18 16 17 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 18 C -0.15 -0.95 6.62 -24.48 -0.16 -1.12 16 19 C 0.05 0.37 7.78 38.18 0.30 0.67 16 20 O -0.39 -4.15 11.36 -35.23 -0.40 -4.55 16 21 C 0.05 0.48 6.57 37.88 0.25 0.73 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 28 H 0.06 0.82 7.48 -51.93 -0.39 0.44 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.69 7.73 -51.93 -0.40 0.29 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -34.81 308.89 -7.24 -42.05 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.16 Total: -2.12 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.81 Total: -6.61 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.40 Total: -37.45 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.31 Total: -17.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.81 -7.24 -42.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360730204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.115 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds