Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99893 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47073 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47355 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.74768 * 57.02074 * 16 15 14 18 18 C 1.55308 * 110.84767 * 180.71323 * 16 15 14 19 19 C 1.54945 * 100.93966 * 152.32711 * 18 16 15 20 20 O 1.43648 * 105.13540 * 323.55426 * 19 18 16 21 21 C 1.43236 * 109.97065 * 24.42822 * 20 19 18 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 0.96991 * 119.99641 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46901 * 299.99583 * 14 13 11 29 29 H 1.08998 * 109.47473 * 60.00153 * 14 13 11 30 30 H 1.08999 * 109.47071 * 300.00336 * 15 14 13 31 31 H 1.09005 * 109.47338 * 59.99380 * 15 14 13 32 32 H 1.08999 * 111.12384 * 270.24417 * 18 16 15 33 33 H 1.08993 * 111.12464 * 34.40561 * 18 16 15 34 34 H 1.08996 * 110.30636 * 204.63831 * 19 18 16 35 35 H 1.09006 * 110.31031 * 82.47179 * 19 18 16 36 36 H 1.08998 * 109.83112 * 238.76907 * 21 20 19 37 37 H 1.09005 * 109.82772 * 117.80067 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 6 2.4273 -8.5661 -0.0014 16 6 1.6623 -9.8911 -0.0007 17 1 0.9878 -9.9480 -0.8551 18 6 2.6428 -11.0954 0.0162 19 6 1.7768 -12.1698 0.7209 20 8 1.0190 -11.4523 1.7081 21 6 0.8899 -10.0789 1.3226 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 3.1355 -6.1344 -0.0006 28 1 0.8068 -7.4610 0.8900 29 1 0.8061 -7.4608 -0.8900 30 1 3.0533 -8.5080 -0.8918 31 1 3.0547 -8.5087 0.8881 32 1 2.9040 -11.4035 -0.9962 33 1 3.5357 -10.8669 0.5980 34 1 2.4131 -12.9141 1.1997 35 1 1.1085 -12.6470 0.0041 36 1 1.3156 -9.4368 2.0937 37 1 -0.1619 -9.8336 1.1749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360730204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -136.714757 kcal Electronic energy + Delta-G solvation = -16714.544141 eV Core-core repulsion = 13875.675824 eV Total energy + Delta-G solvation = -2838.868317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81179 -40.28834 -36.72259 -35.54371 -34.23904 -32.96445 -31.12503 -29.00410 -27.43942 -24.83234 -23.52606 -22.67166 -21.71172 -20.87154 -18.80035 -17.84190 -17.41359 -17.13437 -16.70008 -16.60937 -16.30563 -15.78626 -15.33961 -14.79578 -14.39000 -14.17807 -14.04182 -13.94943 -13.24253 -13.17782 -12.81505 -12.73609 -12.51410 -12.31146 -12.06787 -11.90080 -11.66854 -11.63413 -11.59805 -11.32051 -10.71423 -10.55979 -10.50580 -10.05736 -8.17636 -6.31992 1.42400 1.47112 1.54840 1.72575 2.26366 2.45620 2.96350 3.15173 3.44047 3.74815 3.92549 4.00963 4.16485 4.22220 4.30054 4.39468 4.51351 4.54636 4.57324 4.65987 4.79981 4.84212 4.91687 4.98050 5.05614 5.10068 5.16453 5.32528 5.46976 5.53696 5.63787 5.85978 6.04623 6.17943 6.64090 6.86752 7.36790 7.38904 8.94953 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.077578 B = 0.003194 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.841349 B = 8764.555183 C = 8951.084872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.508 3.492 12 O -0.593 6.593 13 N -0.718 5.718 14 C 0.113 3.887 15 C -0.105 4.105 16 C -0.116 4.116 17 H 0.091 0.909 18 C -0.142 4.142 19 C 0.040 3.960 20 O -0.414 6.414 21 C 0.046 3.954 22 H 0.263 0.737 23 H -0.019 1.019 24 H -0.019 1.019 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.418 0.582 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -23.043 -0.971 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.296 3.704 12 O -0.473 6.473 13 N -0.372 5.372 14 C -0.010 4.010 15 C -0.142 4.142 16 C -0.135 4.135 17 H 0.110 0.890 18 C -0.179 4.179 19 C -0.036 4.036 20 O -0.334 6.334 21 C -0.031 4.031 22 H 0.071 0.929 23 H -0.001 1.001 24 H 0.000 1.000 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.255 0.745 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.775 -23.049 -0.786 25.049 hybrid contribution -0.027 1.078 -0.096 1.082 sum 9.748 -21.971 -0.882 24.053 Atomic orbital electron populations 1.70179 1.08369 1.27885 1.51447 1.26170 0.95734 1.04045 0.94630 0.85355 0.78029 0.77234 0.79511 1.21398 1.18651 1.18609 1.21707 0.94046 0.91616 1.50856 0.90481 1.18693 0.93769 0.92600 0.94609 1.21637 0.99274 0.90069 1.04938 1.21377 0.87809 0.86988 0.74203 1.90657 1.16877 1.88492 1.51241 1.45894 1.11075 1.04710 1.75521 1.21432 0.95537 0.82889 1.01191 1.21673 0.97174 0.90583 1.04799 1.22655 0.97710 0.95349 0.97817 0.89043 1.23307 0.98233 0.93268 1.03112 1.23601 0.93725 0.95312 0.90943 1.88382 1.75752 1.21615 1.47682 1.23341 1.00215 0.82836 0.96667 0.92857 1.00101 1.00030 0.87588 0.87688 0.74473 0.93169 0.92858 0.88612 0.89658 0.87797 0.89375 0.88589 0.91630 0.91226 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.29 21.45 0.28 -59.84 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.98 44.36 29.54 68.60 2.03 46.38 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 11 C 0.51 19.58 7.83 87.65 0.69 20.26 16 12 O -0.59 -29.54 15.98 -3.04 -0.05 -29.58 16 13 N -0.72 -18.33 5.56 -463.06 -2.57 -20.90 16 14 C 0.11 2.54 5.52 86.38 0.48 3.01 16 15 C -0.10 -1.35 4.72 30.59 0.14 -1.21 16 16 C -0.12 -1.53 3.03 -9.53 -0.03 -1.56 16 17 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 18 C -0.14 -1.36 6.62 32.05 0.21 -1.15 16 19 C 0.04 0.52 7.78 72.65 0.56 1.09 16 20 O -0.41 -8.64 11.36 -148.98 -1.69 -10.34 16 21 C 0.05 0.84 6.57 72.45 0.48 1.31 16 22 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 23 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 24 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 25 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 26 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 27 H 0.42 7.25 8.47 -92.71 -0.79 6.46 16 28 H 0.05 1.29 7.48 -2.39 -0.02 1.28 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.96 8.07 -2.38 -0.02 0.94 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.75 8.04 -2.39 -0.02 0.73 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.07 1.29 7.73 -2.39 -0.02 1.27 16 37 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -79.39 308.89 1.77 -77.61 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.25 Total: 7.98 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 3.52 Total: -11.32 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.29 Total: -80.74 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.74 Total: -39.92 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -79.39 1.77 -77.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360730204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.102 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds