Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.98818 * 2 1 4 4 C 1.54099 * 109.87927 * 121.08239 * 2 1 3 5 5 C 1.54815 * 104.18466 * 117.39646 * 4 2 1 6 6 C 1.54990 * 102.09191 * 339.11907 * 5 4 2 7 7 H 1.09000 * 110.62002 * 278.36509 * 6 5 4 8 8 C 1.50702 * 110.61751 * 155.52607 * 6 5 4 9 9 O 1.21283 * 120.00262 * 245.00231 * 8 6 5 10 10 N 1.34777 * 119.99928 * 64.72136 * 8 6 5 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 6 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47460 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00458 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47436 * 59.99644 * 17 15 13 19 19 H 1.48498 * 109.47440 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47278 * 299.99647 * 17 15 13 21 21 O 1.43746 * 109.87910 * 238.91833 * 2 1 3 22 22 H 1.08998 * 109.47236 * 298.91598 * 1 2 3 23 23 H 1.09001 * 109.47466 * 58.91681 * 1 2 3 24 24 H 1.09004 * 109.47411 * 178.91499 * 1 2 3 25 25 H 1.09002 * 109.46743 * 181.08389 * 3 2 1 26 26 H 1.08999 * 109.47282 * 301.08245 * 3 2 1 27 27 H 1.08997 * 109.47037 * 61.08925 * 3 2 1 28 28 H 1.09004 * 110.48860 * 358.71952 * 4 2 1 29 29 H 1.08995 * 110.60114 * 236.12906 * 4 2 1 30 30 H 1.09001 * 110.90405 * 220.92134 * 5 4 2 31 31 H 1.08999 * 110.90922 * 97.32357 * 5 4 2 32 32 H 0.97000 * 120.00317 * 0.28382 * 10 8 6 33 33 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 34 34 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 35 35 H 1.08998 * 109.47382 * 300.00439 * 12 11 10 36 36 H 1.09005 * 109.46800 * 60.00640 * 12 11 10 37 37 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4379 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8325 -1.9524 0.6575 6 6 2.2281 -2.0713 -0.7647 7 1 1.2827 -2.6132 -0.7360 8 6 3.1979 -2.7485 -1.6985 9 8 3.6668 -2.1361 -2.6344 10 7 3.5484 -4.0331 -1.4903 11 6 4.4958 -4.6897 -2.3945 12 6 4.7198 -6.1328 -1.9384 13 6 5.6948 -6.8080 -2.8681 14 1 6.1126 -6.2625 -3.7014 15 6 6.0527 -8.1225 -2.6557 16 7 5.5436 -8.7868 -1.6413 17 14 7.2618 -8.9591 -3.8078 18 1 8.5538 -8.2275 -3.7859 19 1 7.4782 -10.3602 -3.3658 20 1 6.7141 -8.9552 -5.1881 21 8 2.0188 -0.6979 -1.1577 22 1 -0.3633 0.4969 0.8995 23 1 -0.3634 0.5306 -0.8801 24 1 -0.3634 -1.0275 -0.0195 25 1 3.1428 1.4280 -0.0194 26 1 1.6786 1.9607 -0.8801 27 1 1.7103 1.9491 0.8996 28 1 1.2237 -1.0931 1.8575 29 1 2.7191 -0.1090 1.8217 30 1 2.6432 -2.8557 1.2374 31 1 3.9003 -1.7391 0.6099 32 1 3.1734 -4.5231 -0.7418 33 1 4.0926 -4.6876 -3.4072 34 1 5.4440 -4.1523 -2.3799 35 1 5.1228 -6.1354 -0.9256 36 1 3.7714 -6.6700 -1.9534 37 1 5.7957 -9.7115 -1.4917 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362735758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = -104.691541 kcal Electronic energy + Delta-G solvation = -17337.457610 eV Core-core repulsion = 14499.977924 eV Total energy + Delta-G solvation = -2837.479686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37579 -38.52387 -34.86150 -33.24095 -32.93476 -32.04624 -29.68489 -27.62962 -26.81309 -24.47359 -22.48771 -21.03102 -20.26799 -19.99809 -17.19518 -16.59630 -16.36150 -15.35833 -15.18243 -14.77352 -14.52334 -14.14749 -13.94634 -13.61887 -13.24533 -12.87074 -12.50270 -12.31551 -12.27959 -11.95614 -11.88636 -11.54747 -11.22102 -11.02660 -10.90450 -10.83921 -10.66250 -10.32753 -9.92970 -9.72368 -9.41602 -9.11727 -8.55113 -8.36099 -6.10025 -4.12850 2.94566 3.18393 3.31315 3.35018 3.39050 4.01376 4.35061 4.42046 4.57214 4.63992 4.86731 4.89068 4.98519 5.26740 5.27076 5.31028 5.35996 5.46142 5.56860 5.61402 5.69787 5.76104 5.89055 5.96588 6.08699 6.31968 6.34292 6.72873 6.81635 6.91848 7.50698 7.60468 7.88171 7.99059 8.27242 8.64434 8.92868 9.51989 11.01547 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.060491 B = 0.003947 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.768991 B = 7091.916280 C = 7293.564778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.144 4.144 6 C 0.059 3.941 7 H 0.092 0.908 8 C 0.510 3.490 9 O -0.531 6.531 10 N -0.719 5.719 11 C 0.123 3.877 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 O -0.337 6.337 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.397 0.603 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 14.997 8.610 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 C -0.199 4.199 4 C -0.182 4.182 5 C -0.182 4.182 6 C -0.002 4.002 7 H 0.110 0.890 8 C 0.294 3.706 9 O -0.407 6.407 10 N -0.371 5.371 11 C 0.001 3.999 12 C -0.024 4.024 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.256 6.256 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.231 0.769 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.442 15.363 7.788 19.643 hybrid contribution 0.363 -0.955 0.000 1.022 sum -9.079 14.408 7.788 18.727 Atomic orbital electron populations 1.22264 0.94767 1.02525 1.02465 1.22193 0.93700 0.93512 0.85448 1.21882 1.01988 0.93810 1.02246 1.23043 1.00461 0.97042 0.97666 1.23101 1.01412 0.99374 0.94336 1.22983 0.98050 0.85793 0.93405 0.89001 1.20108 0.82427 0.82399 0.85631 1.90698 1.54480 1.64399 1.31109 1.46235 1.46966 1.11595 1.32290 1.21746 0.90488 0.95441 0.92270 1.19319 0.97629 0.88063 0.97409 1.21019 1.25936 0.96787 1.12391 0.92275 1.24991 0.96418 0.97338 0.95501 1.69946 1.43841 1.10564 1.28993 0.86561 0.81507 0.78330 0.81082 1.20094 1.21242 1.20095 1.89060 1.85784 1.18592 1.32128 0.91589 0.91763 0.92221 0.91730 0.91825 0.91377 0.90241 0.90067 0.89224 0.89814 0.76932 0.92484 0.92496 0.95905 0.95900 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.61 37.16 0.32 -1.10 16 2 C 0.09 0.97 1.19 -90.04 -0.11 0.86 16 3 C -0.14 -1.33 8.68 37.16 0.32 -1.01 16 4 C -0.14 -1.28 6.27 -25.20 -0.16 -1.43 16 5 C -0.14 -1.54 6.56 -24.72 -0.16 -1.70 16 6 C 0.06 0.81 3.71 -26.83 -0.10 0.71 16 7 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 8 C 0.51 9.19 7.21 -10.98 -0.08 9.11 16 9 O -0.53 -12.00 16.57 -13.51 -0.22 -12.22 16 10 N -0.72 -12.65 5.54 -60.29 -0.33 -12.99 16 11 C 0.12 2.64 5.61 -4.04 -0.02 2.61 16 12 C 0.01 0.33 5.09 -27.89 -0.14 0.18 16 13 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 17 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 O -0.34 -5.09 10.13 -54.30 -0.55 -5.64 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 29 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 32 H 0.40 5.86 8.47 -40.82 -0.35 5.52 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -32.83 309.52 -7.44 -40.27 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.18 Total: -0.13 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.54 Total: -5.04 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.40 Total: -38.28 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.77 Total: -17.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.83 -7.44 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362735758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.418 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds