Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.98818 * 2 1 4 4 C 1.54099 * 109.87927 * 121.08239 * 2 1 3 5 5 C 1.54815 * 104.18466 * 117.39646 * 4 2 1 6 6 C 1.54990 * 102.09191 * 339.11907 * 5 4 2 7 7 H 1.09000 * 110.62002 * 278.36509 * 6 5 4 8 8 C 1.50702 * 110.61751 * 155.52607 * 6 5 4 9 9 O 1.21283 * 120.00262 * 245.00231 * 8 6 5 10 10 N 1.34777 * 119.99928 * 64.72136 * 8 6 5 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 6 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47460 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00458 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47436 * 59.99644 * 17 15 13 19 19 H 1.48498 * 109.47440 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47278 * 299.99647 * 17 15 13 21 21 O 1.43746 * 109.87910 * 238.91833 * 2 1 3 22 22 H 1.08998 * 109.47236 * 298.91598 * 1 2 3 23 23 H 1.09001 * 109.47466 * 58.91681 * 1 2 3 24 24 H 1.09004 * 109.47411 * 178.91499 * 1 2 3 25 25 H 1.09002 * 109.46743 * 181.08389 * 3 2 1 26 26 H 1.08999 * 109.47282 * 301.08245 * 3 2 1 27 27 H 1.08997 * 109.47037 * 61.08925 * 3 2 1 28 28 H 1.09004 * 110.48860 * 358.71952 * 4 2 1 29 29 H 1.08995 * 110.60114 * 236.12906 * 4 2 1 30 30 H 1.09001 * 110.90405 * 220.92134 * 5 4 2 31 31 H 1.08999 * 110.90922 * 97.32357 * 5 4 2 32 32 H 0.97000 * 120.00317 * 0.28382 * 10 8 6 33 33 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 34 34 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 35 35 H 1.08998 * 109.47382 * 300.00439 * 12 11 10 36 36 H 1.09005 * 109.46800 * 60.00640 * 12 11 10 37 37 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4379 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8325 -1.9524 0.6575 6 6 2.2281 -2.0713 -0.7647 7 1 1.2827 -2.6132 -0.7360 8 6 3.1979 -2.7485 -1.6985 9 8 3.6668 -2.1361 -2.6344 10 7 3.5484 -4.0331 -1.4903 11 6 4.4958 -4.6897 -2.3945 12 6 4.7198 -6.1328 -1.9384 13 6 5.6948 -6.8080 -2.8681 14 1 6.1126 -6.2625 -3.7014 15 6 6.0527 -8.1225 -2.6557 16 7 5.5436 -8.7868 -1.6413 17 14 7.2618 -8.9591 -3.8078 18 1 8.5538 -8.2275 -3.7859 19 1 7.4782 -10.3602 -3.3658 20 1 6.7141 -8.9552 -5.1881 21 8 2.0188 -0.6979 -1.1577 22 1 -0.3633 0.4969 0.8995 23 1 -0.3634 0.5306 -0.8801 24 1 -0.3634 -1.0275 -0.0195 25 1 3.1428 1.4280 -0.0194 26 1 1.6786 1.9607 -0.8801 27 1 1.7103 1.9491 0.8996 28 1 1.2237 -1.0931 1.8575 29 1 2.7191 -0.1090 1.8217 30 1 2.6432 -2.8557 1.2374 31 1 3.9003 -1.7391 0.6099 32 1 3.1734 -4.5231 -0.7418 33 1 4.0926 -4.6876 -3.4072 34 1 5.4440 -4.1523 -2.3799 35 1 5.1228 -6.1354 -0.9256 36 1 3.7714 -6.6700 -1.9534 37 1 5.7957 -9.7115 -1.4917 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362735758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = -126.665204 kcal Electronic energy + Delta-G solvation = -17338.410460 eV Core-core repulsion = 14499.977924 eV Total energy + Delta-G solvation = -2838.432536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47131 -39.85763 -36.62772 -34.88129 -34.11354 -33.11181 -31.45095 -28.35417 -28.02629 -26.24832 -23.50033 -22.84925 -21.49796 -21.00105 -18.66455 -18.26285 -17.66693 -16.76106 -16.50145 -16.21266 -16.13324 -15.39789 -15.01839 -14.66328 -14.35342 -14.27965 -14.26229 -13.24588 -13.23493 -13.06114 -12.95953 -12.82999 -12.66896 -12.55306 -12.38708 -12.24297 -11.69663 -11.65078 -11.56000 -11.47433 -10.95201 -10.60402 -10.56278 -10.08034 -8.24446 -6.34776 1.41942 1.43990 1.51952 1.52983 1.92919 2.41587 2.99388 3.10347 3.46885 3.66507 3.86234 3.95049 4.05192 4.17196 4.31288 4.45821 4.48742 4.54847 4.72243 4.76344 4.82901 4.89815 4.91046 4.96989 5.03306 5.14165 5.24245 5.27841 5.40019 5.46627 5.57370 5.77337 5.96735 6.15586 6.57780 6.77719 7.21329 7.34381 8.87083 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.060491 B = 0.003947 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.768991 B = 7091.916280 C = 7293.564778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.078 3.922 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.142 4.142 6 C 0.063 3.937 7 H 0.120 0.880 8 C 0.508 3.492 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.140 3.860 12 C 0.025 3.975 13 C -0.550 4.550 14 H 0.057 0.943 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.270 1.270 21 O -0.376 6.376 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.413 0.587 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 15.181 9.964 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 C -0.200 4.200 4 C -0.173 4.173 5 C -0.180 4.180 6 C 0.003 3.997 7 H 0.137 0.863 8 C 0.294 3.706 9 O -0.463 6.463 10 N -0.361 5.361 11 C 0.017 3.983 12 C -0.013 4.013 13 C -0.589 4.589 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.195 1.195 21 O -0.296 6.296 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.227 15.549 9.178 20.751 hybrid contribution 0.578 -0.967 -0.412 1.199 sum -9.650 14.582 8.766 19.560 Atomic orbital electron populations 1.22252 0.93198 1.02922 1.03294 1.22554 0.94974 0.93651 0.84915 1.21931 1.01078 0.93652 1.03301 1.23063 1.01238 0.95982 0.97027 1.23147 1.00477 1.01619 0.92735 1.23034 0.97838 0.85507 0.93361 0.86285 1.20991 0.82263 0.81869 0.85454 1.90667 1.56599 1.65482 1.33558 1.45999 1.46172 1.11842 1.32094 1.21254 0.90885 0.93852 0.92342 1.19122 0.96328 0.89486 0.96355 1.21439 1.26841 0.97577 1.13014 0.92498 1.25836 0.98118 0.97956 0.97043 1.70041 1.44969 1.10994 1.30387 0.85518 0.79218 0.77392 0.79050 1.19407 1.20444 1.19462 1.89034 1.86398 1.19298 1.34853 0.88977 0.92819 0.91954 0.93142 0.92775 0.88407 0.87521 0.88912 0.86593 0.91603 0.75011 0.93731 0.93664 0.96937 0.97038 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.61 71.98 0.62 -1.74 16 2 C 0.08 1.49 1.19 -10.42 -0.01 1.48 16 3 C -0.14 -2.48 8.68 71.98 0.62 -1.85 16 4 C -0.14 -1.95 6.27 31.59 0.20 -1.75 16 5 C -0.14 -2.71 6.56 31.89 0.21 -2.51 16 6 C 0.06 1.65 3.71 30.53 0.11 1.76 16 7 H 0.12 2.45 8.12 -2.39 -0.02 2.43 16 8 C 0.51 18.35 7.21 87.66 0.63 18.99 16 9 O -0.58 -27.17 16.57 15.19 0.25 -26.92 16 10 N -0.71 -24.87 5.54 -463.06 -2.57 -27.44 16 11 C 0.14 6.16 5.61 86.38 0.48 6.64 16 12 C 0.02 1.23 5.09 29.85 0.15 1.38 16 13 C -0.55 -30.86 9.11 25.60 0.23 -30.63 16 14 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 15 C 0.01 0.53 5.46 84.66 0.46 0.99 16 16 N -0.92 -53.76 13.29 21.45 0.28 -53.48 16 17 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 O -0.38 -11.16 10.13 -130.75 -1.33 -12.49 16 22 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.88 8.12 -2.38 -0.02 0.86 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 0.99 7.70 -2.39 -0.02 0.97 16 29 H 0.09 1.14 7.70 -2.39 -0.02 1.13 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 32 H 0.41 11.80 8.47 -92.71 -0.79 11.01 16 33 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -71.91 309.52 2.64 -69.27 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.25 Total: 12.65 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 3.72 Total: -7.22 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.28 Total: -80.92 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.07 Total: -39.41 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.91 2.64 -69.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362735758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.395 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds