Wall clock time and date at job start Mon Mar 30 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54107 * 1 3 3 C 1.53019 * 107.91471 * 2 1 4 4 C 1.53355 * 107.93231 * 241.82496 * 2 1 3 5 5 N 1.47052 * 108.36528 * 192.24695 * 4 2 1 6 6 C 1.36985 * 121.26783 * 235.67845 * 5 4 2 7 7 H 1.08009 * 120.00066 * 152.96892 * 6 5 4 8 8 C 1.38803 * 120.00247 * 332.97239 * 6 5 4 9 9 N 1.31630 * 120.00384 * 159.31228 * 8 6 5 10 10 Si 1.86801 * 120.00107 * 339.31139 * 8 6 5 11 11 H 1.48497 * 109.46972 * 93.89191 * 10 8 6 12 12 H 1.48497 * 109.47038 * 213.89034 * 10 8 6 13 13 H 1.48493 * 109.46898 * 333.89095 * 10 8 6 14 14 C 1.46916 * 117.43293 * 56.05641 * 5 4 2 15 15 C 1.52327 * 109.88514 * 310.02586 * 14 5 4 16 16 C 1.54602 * 109.93621 * 269.45239 * 15 14 5 17 17 C 1.55030 * 101.23647 * 208.84988 * 16 15 14 18 18 O 1.43542 * 105.64799 * 34.07818 * 17 16 15 19 19 C 1.43149 * 110.35411 * 342.74218 * 18 17 16 20 20 O 1.40348 * 114.63724 * 37.40930 * 15 14 5 21 21 H 1.09000 * 109.46958 * 298.80707 * 1 2 3 22 22 H 1.08999 * 109.46978 * 58.80527 * 1 2 3 23 23 H 1.08994 * 109.47019 * 178.81021 * 1 2 3 24 24 H 1.09000 * 109.46916 * 179.37683 * 3 2 1 25 25 H 1.08995 * 109.47234 * 299.37422 * 3 2 1 26 26 H 1.09001 * 109.46916 * 59.38025 * 3 2 1 27 27 H 1.08923 * 109.72766 * 312.21557 * 4 2 1 28 28 H 1.09015 * 109.51886 * 72.68650 * 4 2 1 29 29 H 0.96993 * 120.00216 * 179.97438 * 9 8 6 30 30 H 1.09378 * 109.31481 * 190.08345 * 14 5 4 31 31 H 1.09191 * 109.69956 * 70.44472 * 14 5 4 32 32 H 1.09395 * 110.66203 * 326.04262 * 16 15 14 33 33 H 1.08528 * 112.51308 * 89.95015 * 16 15 14 34 34 H 1.09010 * 110.37444 * 274.64209 * 17 16 15 35 35 H 1.09127 * 110.03072 * 152.90952 * 17 16 15 36 36 H 1.08687 * 110.49645 * 111.73849 * 19 18 17 37 37 H 1.08837 * 110.29934 * 234.43001 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5411 0.0000 0.0000 3 6 2.0118 1.4560 0.0000 4 6 2.0132 -0.6889 -1.2862 5 7 3.4535 -0.9597 -1.1648 6 6 4.3446 -0.5000 -2.0981 7 1 5.3701 -0.3095 -1.8178 8 6 3.9295 -0.2788 -3.4041 9 7 4.6215 0.5206 -4.1882 10 14 2.3890 -1.1157 -4.0490 11 1 1.2247 -0.2103 -3.8762 12 1 2.5625 -1.4294 -5.4900 13 1 2.1553 -2.3724 -3.2934 14 6 3.8986 -1.7495 -0.0087 15 6 3.3082 -1.1723 1.2714 16 6 4.2692 -0.1175 1.8663 17 6 3.9412 -0.2283 3.3775 18 8 3.6324 -1.6114 3.6063 19 6 3.3461 -2.2691 2.3675 20 8 1.9948 -0.6937 1.1460 21 1 -0.3633 0.4952 0.9005 22 1 -0.3633 0.5323 -0.8791 23 1 -0.3633 -1.0274 -0.0213 24 1 3.1013 1.4856 0.0112 25 1 1.6439 1.9568 -0.8955 26 1 1.6255 1.9627 0.8844 27 1 1.4710 -1.6236 -1.4230 28 1 1.8345 -0.0323 -2.1378 29 1 4.3317 0.6748 -5.1009 30 1 4.9904 -1.7195 0.0512 31 1 3.5748 -2.7859 -0.1243 32 1 5.3107 -0.3947 1.6786 33 1 4.0721 0.8820 1.4924 34 1 3.0858 0.3996 3.6272 35 1 4.8086 0.0657 3.9708 36 1 4.1263 -2.9871 2.1287 37 1 2.3752 -2.7585 2.4155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369548763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:55 Heat of formation + Delta-G solvation = -57.307186 kcal Electronic energy + Delta-G solvation = -19296.703627 eV Core-core repulsion = 16461.278681 eV Total energy + Delta-G solvation = -2835.424946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15603 -37.84792 -34.80414 -33.63944 -31.75181 -30.55104 -29.05446 -26.81487 -26.07796 -25.60904 -22.19395 -21.74451 -21.45832 -18.44761 -17.00520 -16.76184 -15.92506 -15.23456 -15.12520 -14.71838 -14.17776 -13.83091 -13.76549 -13.54584 -13.01501 -12.56060 -12.32323 -12.16280 -11.82854 -11.69543 -11.55045 -11.44845 -11.28952 -11.10715 -10.73597 -10.52063 -10.32589 -10.15281 -9.64041 -9.54725 -9.36884 -9.14886 -8.60688 -7.05852 -6.05134 -3.42315 3.22703 3.40928 3.43547 3.71924 4.11013 4.43007 4.66167 4.88028 5.14944 5.17725 5.25770 5.36396 5.46384 5.50553 5.59982 5.74739 5.78355 5.86548 5.96419 5.98122 6.06350 6.11599 6.18832 6.23865 6.28398 6.36628 6.38100 6.44608 6.53998 6.61988 6.83419 7.18644 7.78427 8.15150 8.21113 8.78459 9.59302 9.96071 11.10283 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.009735 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.151892 B = 2875.488061 C = 3196.377187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.109 3.891 3 C -0.160 4.160 4 C 0.101 3.899 5 N -0.601 5.601 6 C -0.259 4.259 7 H 0.088 0.912 8 C 0.027 3.973 9 N -0.904 5.904 10 Si 0.878 3.122 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.270 1.270 14 C 0.128 3.872 15 C 0.091 3.909 16 C -0.171 4.171 17 C 0.058 3.942 18 O -0.388 6.388 19 C 0.062 3.938 20 O -0.369 6.369 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 -1.467 10.653 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.068 3.932 3 C -0.217 4.217 4 C -0.025 4.025 5 N -0.325 5.325 6 C -0.387 4.387 7 H 0.105 0.895 8 C -0.172 4.172 9 N -0.546 5.546 10 Si 0.708 3.292 11 H -0.215 1.215 12 H -0.229 1.229 13 H -0.195 1.195 14 C 0.002 3.998 15 C 0.049 3.951 16 C -0.209 4.209 17 C -0.018 4.018 18 O -0.307 6.307 19 C -0.015 4.015 20 O -0.288 6.288 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.965 -1.517 10.785 11.969 hybrid contribution -0.640 -0.192 -1.062 1.255 sum -5.605 -1.710 9.723 11.352 Atomic orbital electron populations 1.22046 0.93557 1.02151 1.01885 1.21838 0.93038 0.91575 0.86730 1.22256 1.03042 0.95540 1.00895 1.22078 0.85942 0.98026 0.96438 1.44201 1.02192 1.60603 1.25499 1.18842 0.93647 1.38256 0.87948 0.89487 1.25228 0.97630 0.98439 0.95907 1.69826 1.40931 1.35659 1.08198 0.87012 0.83438 0.81115 0.77614 1.21520 1.22885 1.19484 1.21411 0.98912 0.93539 0.85944 1.22544 0.83510 0.92655 0.96360 1.23728 1.00257 1.01901 0.95008 1.23317 0.99544 0.83047 0.95900 1.88239 1.90601 1.22359 1.29513 1.23400 1.01072 0.94413 0.82595 1.86272 1.27153 1.74064 1.41344 0.92250 0.91360 0.92389 0.91185 0.92047 0.93360 0.94806 0.90029 0.92630 0.90665 0.95204 0.90018 0.89190 0.92139 0.90877 0.90417 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.66 37.74 0.33 -1.80 16 2 C 0.11 2.00 1.11 -89.85 -0.10 1.90 16 3 C -0.16 -2.86 8.18 37.17 0.30 -2.55 16 4 C 0.10 2.19 3.03 -3.56 -0.01 2.18 16 5 N -0.60 -13.93 2.69 -172.42 -0.46 -14.39 16 6 C -0.26 -6.99 10.10 -15.04 -0.15 -7.14 16 7 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 8 C 0.03 0.77 5.26 -17.43 -0.09 0.68 16 9 N -0.90 -26.96 13.97 55.49 0.78 -26.18 16 10 Si 0.88 21.87 24.41 -169.99 -4.15 17.72 16 11 H -0.29 -6.87 6.64 56.52 0.38 -6.49 16 12 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 13 H -0.27 -6.66 6.61 56.52 0.37 -6.28 16 14 C 0.13 2.51 5.37 -4.16 -0.02 2.48 16 15 C 0.09 1.58 1.02 -89.01 -0.09 1.49 16 16 C -0.17 -2.72 6.14 -24.82 -0.15 -2.87 16 17 C 0.06 0.84 7.79 38.23 0.30 1.13 16 18 O -0.39 -6.23 11.33 -35.23 -0.40 -6.63 16 19 C 0.06 0.96 6.92 38.27 0.26 1.22 16 20 O -0.37 -6.76 8.92 -33.63 -0.30 -7.06 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.39 6.34 -51.93 -0.33 1.06 16 25 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.74 7.17 -51.97 -0.37 0.37 16 28 H 0.08 1.91 4.25 -51.92 -0.22 1.69 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 1.43 7.31 -51.72 -0.38 1.05 16 31 H 0.03 0.57 7.94 -51.82 -0.41 0.16 16 32 H 0.08 1.25 7.59 -51.71 -0.39 0.86 16 33 H 0.09 1.50 5.88 -52.19 -0.31 1.20 16 34 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.07 0.90 8.15 -51.86 -0.42 0.48 16 36 H 0.08 1.07 7.70 -52.10 -0.40 0.67 16 37 H 0.08 1.20 8.03 -52.02 -0.42 0.78 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -29.72 280.81 -5.53 -35.25 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.80 Total: 0.35 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.57 Total: -3.28 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.31 Total: -40.57 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.70 Total: -13.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.15 Total: 17.72 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.72 -5.53 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369548763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.059 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds