Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47566 * 300.00298 * 3 2 1 6 6 H 1.48507 * 109.47095 * 60.00038 * 3 2 1 7 7 C 1.37881 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99852 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99731 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46863 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47284 * 65.00140 * 12 11 10 14 14 C 1.46905 * 110.99928 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47044 * 179.97438 * 14 13 12 16 16 C 1.29982 * 118.56290 * 94.99988 * 15 14 13 17 17 C 1.50389 * 122.51161 * 180.43182 * 16 15 14 18 18 C 1.53125 * 109.59556 * 343.37807 * 17 16 15 19 19 O 1.43308 * 108.41399 * 47.82310 * 18 17 16 20 20 C 1.42898 * 113.02169 * 291.85667 * 19 18 17 21 21 H 0.96997 * 120.00091 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47402 * 60.00467 * 9 7 2 23 23 H 1.09001 * 109.47386 * 299.99990 * 9 7 2 24 24 H 1.08998 * 109.47165 * 60.00641 * 11 10 9 25 25 H 1.09003 * 109.47282 * 300.00387 * 11 10 9 26 26 H 1.09003 * 109.47345 * 304.99963 * 12 11 10 27 27 H 1.09004 * 109.47390 * 185.00224 * 12 11 10 28 28 H 1.00900 * 111.00372 * 56.04831 * 13 12 11 29 29 H 1.09002 * 109.47084 * 60.00144 * 14 13 12 30 30 H 1.08998 * 109.47345 * 300.00013 * 14 13 12 31 31 H 1.08004 * 118.74794 * 0.45617 * 16 15 14 32 32 H 1.08997 * 109.45433 * 223.33711 * 17 16 15 33 33 H 1.09003 * 109.42661 * 103.40157 * 17 16 15 34 34 H 1.09002 * 109.68336 * 167.56430 * 18 17 16 35 35 H 1.08999 * 109.68109 * 288.08078 * 18 17 16 36 36 H 1.09004 * 109.32593 * 289.92600 * 20 19 18 37 37 H 1.08996 * 109.25753 * 170.27764 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8754 -0.0013 12 6 2.6479 -5.9562 -0.0020 13 7 3.4089 -5.8878 1.2527 14 6 4.4596 -6.9139 1.2877 15 6 5.2176 -6.8125 2.5863 16 6 4.8601 -7.5758 3.5758 17 6 5.5478 -7.5412 4.9128 18 6 6.9004 -6.8366 4.7764 19 8 6.7045 -5.6175 4.0490 20 6 6.3530 -5.8334 2.6809 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.9440 -4.9824 -0.8906 25 1 0.9458 -4.9826 0.8894 26 1 3.3209 -5.7957 -0.8443 27 1 2.1819 -6.9376 -0.0912 28 1 2.7976 -5.9694 2.0513 29 1 5.1453 -6.7604 0.4543 30 1 4.0058 -7.9016 1.2076 31 1 4.0379 -8.2614 3.4322 32 1 5.7034 -8.5601 5.2674 33 1 4.9266 -6.9995 5.6261 34 1 7.2996 -6.6136 5.7659 35 1 7.5960 -7.4787 4.2362 36 1 7.2161 -6.2281 2.1446 37 1 6.0517 -4.8863 2.2333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379780819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = -83.056472 kcal Electronic energy + Delta-G solvation = -16939.880258 eV Core-core repulsion = 14103.338739 eV Total energy + Delta-G solvation = -2836.541519 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.55760 -37.22151 -35.85924 -33.67164 -32.61415 -31.61006 -28.75400 -26.75971 -25.52473 -24.88637 -22.50229 -22.24402 -21.50004 -18.18715 -16.69831 -16.35352 -16.25440 -15.81198 -15.47329 -15.02148 -14.71909 -14.22605 -13.91435 -13.76729 -13.43688 -13.06497 -12.79877 -12.62992 -12.26117 -12.03255 -11.70530 -11.26223 -11.16891 -10.79226 -10.73261 -10.65725 -10.41916 -9.94531 -9.68471 -9.05662 -9.00651 -8.75013 -8.19412 -8.08131 -6.04743 -4.05383 1.95873 3.34283 3.40506 3.48074 3.81974 4.35839 4.41476 4.61388 4.65411 4.78356 4.91985 5.01627 5.19524 5.29504 5.31985 5.33258 5.44933 5.52285 5.57371 5.68646 5.71766 5.77350 5.87306 6.01891 6.11037 6.31144 6.32746 6.69603 7.06427 7.13622 7.18316 7.49719 7.53980 7.87750 8.23308 8.67773 9.09691 9.59400 11.07099 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.004459 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.672796 B = 6278.111980 C = 7070.848700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.095 3.905 15 C -0.144 4.144 16 C -0.154 4.154 17 C -0.123 4.123 18 C 0.056 3.944 19 O -0.375 6.375 20 C 0.098 3.902 21 H 0.262 0.738 22 H 0.002 0.998 23 H 0.003 0.997 24 H 0.041 0.959 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.341 0.659 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 -17.732 6.309 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.302 5.302 14 C -0.034 4.034 15 C -0.145 4.145 16 C -0.173 4.173 17 C -0.160 4.160 18 C -0.021 4.021 19 O -0.294 6.294 20 C 0.022 3.978 21 H 0.072 0.928 22 H 0.020 0.980 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.159 0.841 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.417 -16.890 6.138 20.772 hybrid contribution -0.776 -0.317 0.008 0.838 sum 9.641 -17.207 6.146 20.659 Atomic orbital electron populations 1.69978 1.06116 1.26929 1.51053 1.24950 0.94958 0.99425 0.95268 0.86292 0.80125 0.82632 0.77527 1.19414 1.20938 1.20878 1.21113 0.94164 0.89326 1.50136 0.91423 1.20195 0.88874 0.83956 0.95113 1.87958 1.34651 1.12329 1.95019 1.22222 0.93824 0.86385 0.98886 1.22003 0.95769 0.95674 0.92946 1.60330 1.16169 1.49261 1.04470 1.20932 0.94135 0.93006 0.95336 1.21626 0.98711 0.97813 0.96303 1.22061 1.00505 1.00151 0.94570 1.21079 0.97476 1.01286 0.96184 1.22627 0.95473 0.86870 0.97169 1.88188 1.89720 1.28981 1.22462 1.21413 0.93694 0.99871 0.82858 0.92819 0.98012 0.97887 0.94140 0.94814 0.90294 0.94917 0.84096 0.90357 0.95108 0.87528 0.90339 0.89906 0.88757 0.93047 0.92250 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 8 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 9 C 0.19 5.46 5.69 36.00 0.20 5.67 16 10 O -0.38 -9.48 10.27 -35.23 -0.36 -9.84 16 11 C 0.07 1.22 6.22 37.16 0.23 1.46 16 12 C 0.06 0.97 6.07 -3.83 -0.02 0.95 16 13 N -0.67 -10.06 6.44 -115.05 -0.74 -10.80 16 14 C 0.09 1.13 5.74 -4.97 -0.03 1.11 16 15 C -0.14 -1.71 5.44 -101.01 -0.55 -2.26 16 16 C -0.15 -1.63 9.53 -35.89 -0.34 -1.97 16 17 C -0.12 -1.12 6.36 -27.97 -0.18 -1.30 16 18 C 0.06 0.54 6.89 37.22 0.26 0.79 16 19 O -0.38 -5.04 10.85 -35.23 -0.38 -5.42 16 20 C 0.10 1.23 6.76 35.78 0.24 1.47 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 22 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 23 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 4.99 8.72 -39.29 -0.34 4.65 16 29 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 30 H 0.03 0.33 7.86 -51.93 -0.41 -0.08 16 31 H 0.11 1.01 7.83 -52.48 -0.41 0.60 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.44 8.10 -51.93 -0.42 0.01 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -33.03 311.62 -7.88 -40.91 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.20 Total: -1.76 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -0.61 Total: -8.35 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.00 Total: -37.61 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.74 Total: -15.27 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.03 -7.88 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379780819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.147 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds