Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47566 * 300.00298 * 3 2 1 6 6 H 1.48507 * 109.47095 * 60.00038 * 3 2 1 7 7 C 1.37881 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99852 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99731 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46863 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47284 * 65.00140 * 12 11 10 14 14 C 1.46905 * 110.99928 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47044 * 179.97438 * 14 13 12 16 16 C 1.29982 * 118.56290 * 94.99988 * 15 14 13 17 17 C 1.50389 * 122.51161 * 180.43182 * 16 15 14 18 18 C 1.53125 * 109.59556 * 343.37807 * 17 16 15 19 19 O 1.43308 * 108.41399 * 47.82310 * 18 17 16 20 20 C 1.42898 * 113.02169 * 291.85667 * 19 18 17 21 21 H 0.96997 * 120.00091 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47402 * 60.00467 * 9 7 2 23 23 H 1.09001 * 109.47386 * 299.99990 * 9 7 2 24 24 H 1.08998 * 109.47165 * 60.00641 * 11 10 9 25 25 H 1.09003 * 109.47282 * 300.00387 * 11 10 9 26 26 H 1.09003 * 109.47345 * 304.99963 * 12 11 10 27 27 H 1.09004 * 109.47390 * 185.00224 * 12 11 10 28 28 H 1.00900 * 111.00372 * 56.04831 * 13 12 11 29 29 H 1.09002 * 109.47084 * 60.00144 * 14 13 12 30 30 H 1.08998 * 109.47345 * 300.00013 * 14 13 12 31 31 H 1.08004 * 118.74794 * 0.45617 * 16 15 14 32 32 H 1.08997 * 109.45433 * 223.33711 * 17 16 15 33 33 H 1.09003 * 109.42661 * 103.40157 * 17 16 15 34 34 H 1.09002 * 109.68336 * 167.56430 * 18 17 16 35 35 H 1.08999 * 109.68109 * 288.08078 * 18 17 16 36 36 H 1.09004 * 109.32593 * 289.92600 * 20 19 18 37 37 H 1.08996 * 109.25753 * 170.27764 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8754 -0.0013 12 6 2.6479 -5.9562 -0.0020 13 7 3.4089 -5.8878 1.2527 14 6 4.4596 -6.9139 1.2877 15 6 5.2176 -6.8125 2.5863 16 6 4.8601 -7.5758 3.5758 17 6 5.5478 -7.5412 4.9128 18 6 6.9004 -6.8366 4.7764 19 8 6.7045 -5.6175 4.0490 20 6 6.3530 -5.8334 2.6809 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.9440 -4.9824 -0.8906 25 1 0.9458 -4.9826 0.8894 26 1 3.3209 -5.7957 -0.8443 27 1 2.1819 -6.9376 -0.0912 28 1 2.7976 -5.9694 2.0513 29 1 5.1453 -6.7604 0.4543 30 1 4.0058 -7.9016 1.2076 31 1 4.0379 -8.2614 3.4322 32 1 5.7034 -8.5601 5.2674 33 1 4.9266 -6.9995 5.6261 34 1 7.2996 -6.6136 5.7659 35 1 7.5960 -7.4787 4.2362 36 1 7.2161 -6.2281 2.1446 37 1 6.0517 -4.8863 2.2333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379780819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = -107.264913 kcal Electronic energy + Delta-G solvation = -16940.930015 eV Core-core repulsion = 14103.338739 eV Total energy + Delta-G solvation = -2837.591276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43341 -38.82393 -37.20001 -35.03798 -34.47520 -32.55919 -30.27722 -28.69718 -26.43723 -25.91262 -24.47252 -23.35455 -22.85488 -19.03682 -18.63483 -17.69163 -17.35975 -17.19887 -16.87088 -16.51367 -16.09940 -15.57370 -15.27481 -15.11655 -14.64463 -14.30897 -13.89567 -13.75149 -13.49045 -13.30736 -13.13938 -12.93654 -12.73779 -12.52973 -12.29184 -12.06884 -11.81386 -11.44689 -11.24120 -10.86426 -10.55190 -10.19663 -9.89933 -9.25581 -8.31583 -6.43302 1.10150 1.40053 1.41695 1.56824 2.36069 2.98608 3.02123 3.21613 3.34493 3.75063 3.80751 4.05585 4.19387 4.24128 4.31267 4.41054 4.46018 4.54835 4.58485 4.63611 4.70644 4.75043 4.81428 4.83845 4.98934 5.02047 5.04487 5.19490 5.50655 5.56642 5.84472 5.97986 6.08214 6.21759 6.42712 6.58316 6.87223 7.29065 8.81139 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.004459 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.672796 B = 6278.111980 C = 7070.848700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.397 6.397 11 C 0.054 3.946 12 C 0.076 3.924 13 N -0.696 5.696 14 C 0.101 3.899 15 C -0.165 4.165 16 C -0.144 4.144 17 C -0.124 4.124 18 C 0.048 3.952 19 O -0.405 6.405 20 C 0.098 3.902 21 H 0.271 0.729 22 H -0.015 1.015 23 H -0.017 1.017 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.340 0.660 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.706 -18.591 6.787 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.317 6.317 11 C -0.024 4.024 12 C -0.053 4.053 13 N -0.328 5.328 14 C -0.027 4.027 15 C -0.165 4.165 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.028 4.028 19 O -0.324 6.324 20 C 0.022 3.978 21 H 0.079 0.921 22 H 0.003 0.997 23 H 0.000 1.000 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.193 -17.783 6.615 22.029 hybrid contribution -1.044 -0.161 -0.087 1.060 sum 10.149 -17.944 6.529 21.624 Atomic orbital electron populations 1.70074 1.07724 1.28548 1.50759 1.25952 0.95964 1.03345 0.93917 0.85143 0.78626 0.77336 0.78344 1.18998 1.19430 1.19616 1.21417 0.94017 0.90982 1.51933 0.92300 1.19807 0.88682 0.85032 0.93204 1.87913 1.34750 1.13965 1.95071 1.22613 0.95626 0.84635 0.99491 1.21897 0.94753 0.95632 0.93004 1.60286 1.16827 1.51400 1.04314 1.20910 0.93240 0.93042 0.95525 1.21581 0.99258 0.98734 0.96971 1.22364 1.00145 0.99201 0.94622 1.21155 0.96860 1.02793 0.95301 1.22897 0.96278 0.85951 0.97713 1.88136 1.89958 1.31373 1.22939 1.21319 0.94783 0.98891 0.82826 0.92054 0.99721 0.99966 0.93213 0.94437 0.90718 0.91160 0.84143 0.90482 0.93011 0.86116 0.87512 0.90298 0.87161 0.91735 0.90806 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.98 45.82 29.54 68.60 2.03 47.85 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -33.87 9.43 25.60 0.24 -33.63 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.17 5.69 71.23 0.41 12.57 16 10 O -0.40 -20.31 10.27 -148.98 -1.53 -21.84 16 11 C 0.05 2.02 6.22 71.98 0.45 2.47 16 12 C 0.08 2.18 6.07 86.30 0.52 2.71 16 13 N -0.70 -20.40 6.44 -517.92 -3.34 -23.74 16 14 C 0.10 2.28 5.74 85.56 0.49 2.77 16 15 C -0.16 -3.73 5.44 -15.58 -0.08 -3.82 16 16 C -0.14 -2.76 9.53 26.60 0.25 -2.50 16 17 C -0.12 -1.98 6.36 29.79 0.19 -1.79 16 18 C 0.05 0.84 6.89 72.02 0.50 1.34 16 19 O -0.40 -10.79 10.85 -148.98 -1.62 -12.40 16 20 C 0.10 2.47 6.76 71.09 0.48 2.95 16 21 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 23 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 1.52 8.14 -2.38 -0.02 1.51 16 28 H 0.34 9.76 8.72 -89.69 -0.78 8.98 16 29 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 30 H 0.05 0.95 7.86 -2.39 -0.02 0.94 16 31 H 0.12 1.95 7.83 -2.91 -0.02 1.92 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -71.64 311.62 -0.01 -71.65 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.25 Total: 11.61 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 3.91 Total: -16.10 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.05 Total: -80.77 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -3.15 Total: -34.24 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.64 -0.01 -71.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379780819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.614 kcal (2) G-P(sol) polarization free energy of solvation -71.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds